mRNA_P-wetherbeei_contig15510.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15510.1.1
Unique NamemRNA_P-wetherbeei_contig15510.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15510.1.1 vs. uniprot
Match: A0A7V4EK31_9BACT (Redox-sensing transcriptional repressor Rex n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7V4EK31_9BACT)

HSP 1 Score: 162 bits (411), Expect = 1.900e-47
Identity = 87/178 (48.88%), Postives = 116/178 (65.17%), Query Frame = 1
Query:   13 DKIPQPTIARLPLYFRCLAELHDNQVTVVSSDEIASRAGVKASQFRKDLSYFGEFGIQGLGYPVPHLLRRIGSIMQLDQVHKVALLGAGNLGTALAGFPGFARWGFHILWIFDANPEKIGQKINQIEVQDARNLP---MPLPADVGILAVPATAAQKAADLFVQSGVKAILNFTGATL 537
            +++P PT+ R+  Y  CL EL    V  +SS EI     V A+QFRKDLSYFGEFG  G+GY VP L RRI  I+++D+   V L+GAGNLG+AL G+P  +R  F I  +FD NP KIG+++   E++D   LP     + A +GI+AVPA+AAQ  ADL V +G+ AILNF   +L
Sbjct:    6 NRVPVPTLERMATYLACLQELDARGVETISSAEIEKLTHVNAAQFRKDLSYFGEFGRPGIGYSVPELARRISKILKVDREQPVILVGAGNLGSALVGYPSLSREHFRIAAVFDNNPSKIGRRLWDHEIRDISTLPEVNREVGARLGIIAVPASAAQSVADLMVGAGITAILNFAPVSL 183          
BLAST of mRNA_P-wetherbeei_contig15510.1.1 vs. uniprot
Match: A0A3A4QQY2_9CHLR (Redox-sensing transcriptional repressor Rex n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A3A4QQY2_9CHLR)

HSP 1 Score: 162 bits (410), Expect = 2.380e-47
Identity = 84/179 (46.93%), Postives = 117/179 (65.36%), Query Frame = 1
Query:   13 DKIPQPTIARLPLYFRCLAELHDNQVTVVSSDEIASRAGVKASQFRKDLSYFGEFGIQGLGYPVPHLLRRIGSIMQLDQVHKVALLGAGNLGTALAGFPGFARWGFHILWIFDANPEKIGQKINQIEVQDARNLPMPLPA---DVGILAVPATAAQKAADLFVQSGVKAILNFTGATLS 540
            +KIP   I RLP+Y R L  + D+ +   SS E+    G+ A+Q RKD+S FGEFG QG GY + +LL ++  I+++D++  VAL+GAG++G ALA + GF   GFHI+ IFD  P+KIGQKI    VQDA  +   + A    + +L VPATAAQ  AD  VQ+GV+AILN+   +L+
Sbjct:    4 EKIPDIIIGRLPVYLRALQRMADHGIKTTSSQELGEHVGISAAQIRKDISQFGEFGKQGTGYSIAYLLDKLREILKVDRIWDVALIGAGDMGHALANYQGFTNRGFHIVAIFDNQPQKIGQKIGDFVVQDAEKIVESIKAANIKIAMLTVPATAAQSVADKLVQAGVRAILNYAPISLN 182          
BLAST of mRNA_P-wetherbeei_contig15510.1.1 vs. uniprot
Match: A0A3M2BQ50_9BACT (Redox-sensing transcriptional repressor Rex n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A3M2BQ50_9BACT)

HSP 1 Score: 159 bits (403), Expect = 2.890e-46
Identity = 84/182 (46.15%), Postives = 121/182 (66.48%), Query Frame = 1
Query:    1 MDKRDKIPQPTIARLPLYFRCLAELHDNQVTVVSSDEIASRAGVKASQFRKDLSYFGEFGIQGLGYPVPHLLRRIGSIMQLDQVHKVALLGAGNLGTALAGFPGFARWGFHILWIFDANPEKIGQKINQIEVQDARNLPMPLP---ADVGILAVPATAAQKAADLFVQSGVKAILNFTGATL 537
            M +RD +   T+ RL +Y RCL +L  +  T +SS ++A R  + A+Q RKDL+ FGEFGI+G+GY +  L RR+ S++ +D+ H+VA++GAGNLGTALA FPGF    F ++ + D +P+K+G+KI    V  +R LP  +P     +GILAVPA AAQ+  D   ++GVKA+LNF    L
Sbjct:    1 MSQRDDVSSLTLNRLSVYLRCLRQLQQDGETRISSQDLARRFHLSAAQIRKDLAQFGEFGIRGVGYQIDDLRRRLESLLGVDREHRVAIVGAGNLGTALARFPGFNSDSFRVVAVLDNDPQKVGRKIAGHTVCHSRELPRLIPELGVQIGILAVPAAAAQENYDALARAGVKAVLNFAPVQL 182          
BLAST of mRNA_P-wetherbeei_contig15510.1.1 vs. uniprot
Match: A0A4Q5NNI3_9BACT (Redox-sensing transcriptional repressor Rex n=2 Tax=bacterium TaxID=1869227 RepID=A0A4Q5NNI3_9BACT)

HSP 1 Score: 160 bits (404), Expect = 3.080e-46
Identity = 88/181 (48.62%), Postives = 114/181 (62.98%), Query Frame = 1
Query:    4 DKRDKIPQPTIARLPLYFRCLAELHDNQVTVVSSDEIASRAGVKASQFRKDLSYFGEFGIQGLGYPVPHLLRRIGSIMQLDQVHKVALLGAGNLGTALAGFPGFARWGFHILWIFDANPEKIGQKINQIEV---QDARNLPMPLPADVGILAVPATAAQKAADLFVQSGVKAILNFTGATL 537
            D   K+PQPTI RL  Y +C+  L D +    SS EIA R G+ A+Q RKDLSYFGEFG  GLGY +  L  ++  IM LD+   V L+GAGNLG AL+ + GF R GF I+  FD + EK+G  +  I +   Q+       L A VG++AVP++AAQ+A D  V +GVKAILNF  AT+
Sbjct:   14 DAFKKVPQPTIERLSAYLQCIRGLRDEERDTASSAEIARRTGINAAQLRKDLSYFGEFGTPGLGYDLQALETQLTRIMGLDEERDVLLIGAGNLGRALSSYTGFGRRGFRIVAAFDLDGEKVGTSLGNIPIFHLQELSRRNTELGAQVGLVAVPSSAAQEAVDALVAAGVKAILNFAPATI 194          
BLAST of mRNA_P-wetherbeei_contig15510.1.1 vs. uniprot
Match: UPI0019AE8103 (Redox-sensing transcriptional repressor Rex n=1 Tax=Anaerolineales bacterium TaxID=2073117 RepID=UPI0019AE8103)

HSP 1 Score: 159 bits (402), Expect = 3.860e-46
Identity = 81/179 (45.25%), Postives = 119/179 (66.48%), Query Frame = 1
Query:   13 DKIPQPTIARLPLYFRCLAELHDNQVTVVSSDEIASRAGVKASQFRKDLSYFGEFGIQGLGYPVPHLLRRIGSIMQLDQVHKVALLGAGNLGTALAGFPGFARWGFHILWIFDANPEKIGQKINQIEVQDARNLPMPLPA---DVGILAVPATAAQKAADLFVQSGVKAILNFTGATLS 540
            +KIP   I RLP+Y R L  + DN +   SS E+    G+ A+Q RKD+S FGEFG QG GY + +LL ++  I+++D++  VAL+GAG++G ALA + GF   GF I+ IFD++  K+GQKI++  V+DA  +P  L +    + +L VPAT+AQ  AD  +Q+GVKAILN+   +L+
Sbjct:    4 EKIPDIIIGRLPVYLRALQRMADNGIKTTSSQELGEHVGISAAQIRKDISQFGEFGKQGTGYSIAYLLDKLREILKVDRIWDVALVGAGDMGHALARYQGFTNRGFRIVAIFDSDKTKVGQKIDEFVVEDAEKIPERLKSAGVKIAMLTVPATSAQSVADKLIQAGVKAILNYAPISLN 182          
BLAST of mRNA_P-wetherbeei_contig15510.1.1 vs. uniprot
Match: A0A7V9I926_9CHLR (Redox-sensing transcriptional repressor Rex n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9I926_9CHLR)

HSP 1 Score: 157 bits (398), Expect = 2.150e-45
Identity = 82/182 (45.05%), Postives = 117/182 (64.29%), Query Frame = 1
Query:    1 MDKRDKIPQPTIARLPLYFRCLAELHDNQVTVVSSDEIASRAGVKASQFRKDLSYFGEFGIQGLGYPVPHLLRRIGSIMQLDQVHKVALLGAGNLGTALAGFPGFARWGFHILWIFDANPEKIGQKINQIEVQDARNLP---MPLPADVGILAVPATAAQKAADLFVQSGVKAILNFTGATL 537
            M+    IP   I RLP+Y R L  + D    +VSS E+A   G  A+Q R+DLSYFGEFG QG GY + HLL  I SI+ +++ ++V ++GAG LG A++ + GF+  GF + W++D NPE+IG  +N + V+D   +P     +   V I+AVPA AAQ+ AD+ V+SG+KAILN+  A L
Sbjct:    1 MEPGISIPDVVIKRLPIYARALTGMLDAGSEIVSSKELALATGSTAAQIRRDLSYFGEFGKQGKGYDIHHLLDEIRSILNINEPYRVVVVGAGPLGQAISRYGGFSEHGFQLSWVYDHNPERIGTMLNDVLVEDVVTMPERIRTMQVRVAIIAVPAAAAQQVADMLVESGIKAILNYAPAVL 182          
BLAST of mRNA_P-wetherbeei_contig15510.1.1 vs. uniprot
Match: A0A3D3E1H6_9BACT (Redox-sensing transcriptional repressor Rex n=2 Tax=Thermotogales TaxID=2419 RepID=A0A3D3E1H6_9BACT)

HSP 1 Score: 157 bits (397), Expect = 2.870e-45
Identity = 82/177 (46.33%), Postives = 118/177 (66.67%), Query Frame = 1
Query:   16 KIPQPTIARLPLYFRCLAELHDNQVTVVSSDEIASRAGVKASQFRKDLSYFGEFGIQGLGYPVPHLLRRIGSIMQLDQVHKVALLGAGNLGTALAGFPGFARWGFHILWIFDANPEKIGQKINQIEVQDARNLPMP---LPADVGILAVPATAAQKAADLFVQSGVKAILNFTGATL 537
            KIP+PT+ RL LY+RCL+   ++ V  VSS +IA +  +K SQ RKDLSYFGEFG +GLGY V  LL  I  I+ +++   VA++GAGNLG+AL  +PG ++  F ++ +FD N +KIG+K++ I V D  +L      L  ++G++AVP  AAQ  A+L  +SG+K I+NF    L
Sbjct:    2 KIPRPTVKRLGLYYRCLSNYREDGVDFVSSQDIAEKLNIKPSQVRKDLSYFGEFGKRGLGYDVKKLLNEIAHIIGVNKEWNVAIVGAGNLGSALTSYPGLSKHKFRVVALFDNNQQKIGKKVSGITVYDISDLERTVNELKIEIGVIAVPEFAAQHVAELLEKSGIKGIVNFAPVRL 178          
BLAST of mRNA_P-wetherbeei_contig15510.1.1 vs. uniprot
Match: A0A6N7B011_9FIRM (Redox-sensing transcriptional repressor Rex n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A6N7B011_9FIRM)

HSP 1 Score: 157 bits (396), Expect = 3.510e-45
Identity = 84/177 (47.46%), Postives = 115/177 (64.97%), Query Frame = 1
Query:   19 IPQPTIARLPLYFRCLAELHDNQVTVVSSDEIASRAGVKASQFRKDLSYFGEFGIQGLGYPVPHLLRRIGSIMQLDQVHKVALLGAGNLGTALAGFPGFARWGFHILWIFDANPEKIGQKINQIEVQDARNLPMPLPA---DVGILAVPATAAQKAADLFVQSGVKAILNFTGATLS 540
            IP+PTI RLPLY RCL+ L  + V V SSDE+ +  G+ + Q RKDL+YFGEFG +G+GY V  LL ++  I+  DQ HKVAL+G G+LG ALA + GF   GF+I  +FDA+P K+G  +    V  +  +P  +     ++ IL VPA AAQ+ AD  V++GV+AI NF    +S
Sbjct:    5 IPRPTIERLPLYLRCLSRLKSSGVEVASSDELGNLLGITSVQIRKDLAYFGEFGRRGVGYDVQSLLAQVTGILGADQPHKVALVGVGHLGQALANYDGFREHGFNISAVFDADPNKVGMTVAGQRVLHSDRIPEVVSQAGIELAILTVPAHAAQRVADALVKAGVRAIWNFAPTRIS 181          
BLAST of mRNA_P-wetherbeei_contig15510.1.1 vs. uniprot
Match: A0A4P5T0F1_9BACT (Redox-sensing transcriptional repressor Rex n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A4P5T0F1_9BACT)

HSP 1 Score: 156 bits (395), Expect = 5.750e-45
Identity = 83/177 (46.89%), Postives = 115/177 (64.97%), Query Frame = 1
Query:   16 KIPQPTIARLPLYFRCLAELHDNQVTVVSSDEIASRAGVKASQFRKDLSYFGEFGIQGLGYPVPHLLRRIGSIMQLDQVHKVALLGAGNLGTALAGFPGFARWGFHILWIFDANPEKIGQKINQIEVQDARNLP---MPLPADVGILAVPATAAQKAADLFVQSGVKAILNFTGATL 537
            K+P PT+ RL  Y R L +L  +    +SS E+  + G+ A+QFRKDLSYFGEFG  G+GY V  L  RI  I+++D+  ++ L+GAGNLG+AL G+PG     F+++ +FD N  KIG+ +  +++QD   L      L A + ILAVPA AAQKAAD+ V++GV AILNF    L
Sbjct:    8 KVPVPTLERLATYLRYLIDLEQSHTETISSAEVERQTGINAAQFRKDLSYFGEFGKPGVGYNVVDLQNRIAHILKIDREQRIILVGAGNLGSALVGYPGLKEHRFNLVAVFDNNVGKIGRPLWDLQIQDITALKEANATLEARIAILAVPAAAAQKAADILVEAGVTAILNFAPVLL 184          
BLAST of mRNA_P-wetherbeei_contig15510.1.1 vs. uniprot
Match: A0A0R3JVV7_CALMK (Redox-sensing transcriptional repressor Rex n=1 Tax=Caloramator mitchellensis TaxID=908809 RepID=A0A0R3JVV7_CALMK)

HSP 1 Score: 156 bits (395), Expect = 6.460e-45
Identity = 85/177 (48.02%), Postives = 112/177 (63.28%), Query Frame = 1
Query:    1 MDKRDKIPQPTIARLPLYFRCLAELHDNQVTVVSSDEIASRAGVKASQFRKDLSYFGEFGIQGLGYPVPHLLRRIGSIMQLDQVHKVALLGAGNLGTALAGFPGFARWGFHILWIFDANPEKIGQKINQIEVQDARNLPMPL---PADVGILAVPATAAQKAADLFVQSGVKAILNF 522
            M K+  I    I RLP Y+R L EL  N +  +SS E++ R G  ASQ R+DL+ FG+FG QG GY V  L   IG I+ L++ +K  ++GAGN+G A+A +  F + GFH++ IFD NP+ IG  I  IEVQD  NL   L   PAD+GI+ VP   AQ+ AD FV+SG+K I NF
Sbjct:    1 MSKKTVISMAVIRRLPKYYRYLGELLRNDIERISSKELSERIGFTASQIRQDLNNFGDFGQQGYGYNVRALRDEIGKILGLNKEYKTVIVGAGNIGQAVANYTNFEKLGFHLIGIFDRNPKLIGMGIRDIEVQDVDNLESFLKNNPADIGIICVPKEQAQRIADAFVKSGIKGIWNF 177          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15510.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V4EK31_9BACT1.900e-4748.88Redox-sensing transcriptional repressor Rex n=1 Ta... [more]
A0A3A4QQY2_9CHLR2.380e-4746.93Redox-sensing transcriptional repressor Rex n=1 Ta... [more]
A0A3M2BQ50_9BACT2.890e-4646.15Redox-sensing transcriptional repressor Rex n=1 Ta... [more]
A0A4Q5NNI3_9BACT3.080e-4648.62Redox-sensing transcriptional repressor Rex n=2 Ta... [more]
UPI0019AE81033.860e-4645.25Redox-sensing transcriptional repressor Rex n=1 Ta... [more]
A0A7V9I926_9CHLR2.150e-4545.05Redox-sensing transcriptional repressor Rex n=1 Ta... [more]
A0A3D3E1H6_9BACT2.870e-4546.33Redox-sensing transcriptional repressor Rex n=2 Ta... [more]
A0A6N7B011_9FIRM3.510e-4547.46Redox-sensing transcriptional repressor Rex n=1 Ta... [more]
A0A4P5T0F1_9BACT5.750e-4546.89Redox-sensing transcriptional repressor Rex n=1 Ta... [more]
A0A0R3JVV7_CALMK6.460e-4548.02Redox-sensing transcriptional repressor Rex n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15510contigP-wetherbeei_contig15510:5..544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog555079.Toce_0688
Preferred namerex
PFAMsCoA_binding,Put_DNA-bind_N
Model size540
Max annot lvl186801|Clostridia
KEGG koko:K01926
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.56e-45
EggNOG OGsCOG2344@1|root,COG2344@2|Bacteria,1TSMR@1239|Firmicutes,247RQ@186801|Clostridia,42G76@68295|Thermoanaerobacterales
DescriptionModulates transcription in response to changes in cellular NADH NAD( ) redox state
Cds size540
COG categoryK
BRITEko00000,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186058.615389-CDS-P-wetherbeei_contig15510:4..5441683186058.615389-CDS-P-wetherbeei_contig15510:4..544Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15510 5..544 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15510.1.1prot_P-wetherbeei_contig15510.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15510 5..544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15510.1.1

>prot_P-wetherbeei_contig15510.1.1 ID=prot_P-wetherbeei_contig15510.1.1|Name=mRNA_P-wetherbeei_contig15510.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=180bp
MDKRDKIPQPTIARLPLYFRCLAELHDNQVTVVSSDEIASRAGVKASQFR
KDLSYFGEFGIQGLGYPVPHLLRRIGSIMQLDQVHKVALLGAGNLGTALA
GFPGFARWGFHILWIFDANPEKIGQKINQIEVQDARNLPMPLPADVGILA
VPATAAQKAADLFVQSGVKAILNFTGATLS
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mRNA from alignment at P-wetherbeei_contig15510:5..544-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15510.1.1 ID=mRNA_P-wetherbeei_contig15510.1.1|Name=mRNA_P-wetherbeei_contig15510.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=540bp|location=Sequence derived from alignment at P-wetherbeei_contig15510:5..544- (Phaeothamnion wetherbeei SAG_119_79)
ATGGATAAACGTGACAAGATCCCTCAGCCTACCATTGCGCGTCTTCCCCT GTATTTTCGCTGCCTGGCCGAGCTGCACGACAACCAGGTCACGGTCGTAA GCTCCGACGAGATCGCCAGCCGGGCCGGCGTCAAAGCCTCCCAGTTCCGC AAAGACCTGTCCTATTTTGGCGAGTTTGGCATCCAGGGTCTGGGTTACCC GGTCCCTCACCTCTTACGCCGCATCGGTTCGATCATGCAACTCGACCAGG TCCACAAGGTGGCTCTGTTGGGCGCCGGTAACCTGGGAACCGCGCTGGCC GGCTTTCCGGGCTTTGCCCGCTGGGGTTTTCACATTCTCTGGATCTTTGA TGCCAACCCCGAGAAAATTGGCCAGAAGATCAATCAGATCGAGGTGCAGG ACGCGCGCAATCTACCCATGCCTTTGCCCGCCGATGTTGGGATTTTGGCC GTGCCGGCCACGGCTGCGCAGAAAGCTGCCGACCTCTTCGTGCAGTCGGG CGTGAAGGCAATTTTGAACTTCACCGGCGCCACCCTCAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15510:5..544-

>mRNA_P-wetherbeei_contig15510.1.1 ID=mRNA_P-wetherbeei_contig15510.1.1|Name=mRNA_P-wetherbeei_contig15510.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=540bp|location=Sequence derived from alignment at P-wetherbeei_contig15510:5..544- (Phaeothamnion wetherbeei SAG_119_79)
ATGGATAAACGTGACAAGATCCCTCAGCCTACCATTGCGCGTCTTCCCCT
GTATTTTCGCTGCCTGGCCGAGCTGCACGACAACCAGGTCACGGTCGTAA
GCTCCGACGAGATCGCCAGCCGGGCCGGCGTCAAAGCCTCCCAGTTCCGC
AAAGACCTGTCCTATTTTGGCGAGTTTGGCATCCAGGGTCTGGGTTACCC
GGTCCCTCACCTCTTACGCCGCATCGGTTCGATCATGCAACTCGACCAGG
TCCACAAGGTGGCTCTGTTGGGCGCCGGTAACCTGGGAACCGCGCTGGCC
GGCTTTCCGGGCTTTGCCCGCTGGGGTTTTCACATTCTCTGGATCTTTGA
TGCCAACCCCGAGAAAATTGGCCAGAAGATCAATCAGATCGAGGTGCAGG
ACGCGCGCAATCTACCCATGCCTTTGCCCGCCGATGTTGGGATTTTGGCC
GTGCCGGCCACGGCTGCGCAGAAAGCTGCCGACCTCTTCGTGCAGTCGGG
CGTGAAGGCAATTTTGAACTTCACCGGCGCCACCCTCAGC
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