mRNA_P-wetherbeei_contig15506.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15506.1.1
Unique NamemRNA_P-wetherbeei_contig15506.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15506.1.1 vs. uniprot
Match: D8LN47_ECTSI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN47_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 3.550e-34
Identity = 69/131 (52.67%), Postives = 92/131 (70.23%), Query Frame = 1
Query:   10 NPTVFRMLKFFVVFVLVVHFIACSFWYIARHGD--YSSSWAPDRDQYADAPMGDKYAKALVFALAVMYGNEEGAQNTIENVFMSLCYMIALVVNAVIIGSVNTLLANMDHTAVAKKTQMDGVNEYMRFRKV 396
            NP++FR+  F   FVLVVHFIAC +W+++R  D  +   W P+++ Y DA +  KY +AL F+L + YGN+   +N  E VF ++C  +AL+ NAVIIGS   LL+NMD  AVAKKTQMDG+N YMRFRKV
Sbjct:  420 NPSMFRIYIFVFTFVLVVHFIACGYWFVSRTTDPEFEGLWVPEQE-YLDAALYKKYTRALYFSLVITYGNDLKPENDAEYVFSNICLTLALLTNAVIIGSATNLLSNMDAGAVAKKTQMDGINGYMRFRKV 549          
BLAST of mRNA_P-wetherbeei_contig15506.1.1 vs. uniprot
Match: A0A6H5JMZ2_9PHAE (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMZ2_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 2.150e-33
Identity = 66/126 (52.38%), Postives = 89/126 (70.63%), Query Frame = 1
Query:   22 FRMLKFFVVFVLVVHFIACSFWYIARHGD--YSSSWAPDRDQYADAPMGDKYAKALVFALAVMYGNEEGAQNTIENVFMSLCYMIALVVNAVIIGSVNTLLANMDHTAVAKKTQMDGVNEYMRFRK 393
            FR+  F   FVLVVHFIAC +W+++R  D  +   W P+++ Y DA + +KY +AL F+L + YGN+   +N +E VF ++C  +AL+ NAVIIGS   LL+NMD  AVAKKTQMDG+N YMRFRK
Sbjct:    2 FRIYMFVFTFVLVVHFIACGYWFVSRTTDPEFEGVWVPEQE-YLDAGLFEKYTRALYFSLVITYGNDLKPENDVEYVFSNICLTLALLTNAVIIGSATNLLSNMDAGAVAKKTQMDGINGYMRFRK 126          
BLAST of mRNA_P-wetherbeei_contig15506.1.1 vs. uniprot
Match: A0A2D4BLP4_PYTIN (Cyclic nucleotide-binding domain-containing protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BLP4_PYTIN)

HSP 1 Score: 115 bits (289), Expect = 1.900e-27
Identity = 59/131 (45.04%), Postives = 87/131 (66.41%), Query Frame = 1
Query:    4 NVNPTVFRMLKFFVVFVLVVHFIACSFWYIARHGDYSSSWAPDRDQYADAPMGDKYAKALVFALAVMYGNEEGAQNTIENVFMSLCYMIALVVNAVIIGSVNTLLANMDHTAVAKKTQMDGVNEYMRFRKV 396
            ++NP++ RML    +F+L  HFIACS+++I+   D  ++W P  +  A +P+  +YA A+ FA+ V   N+ G  NT E VF SL   + +V+NA IIGS   LLAN+D  A+A+K QMD +N+YMRF+KV
Sbjct:  304 SMNPSLLRMLSLTFIFLLSQHFIACSYYFISLRQDDLTTWQPSVETRA-SPLVQQYAHAIXFAIMVTTANDVGPTNTTEEVFTSLMLFVGIVINASIIGSAANLLANLDKVAIARKNQMDSINDYMRFKKV 433          
BLAST of mRNA_P-wetherbeei_contig15506.1.1 vs. uniprot
Match: A0A2D4BKR1_PYTIN (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BKR1_PYTIN)

HSP 1 Score: 113 bits (282), Expect = 1.440e-26
Identity = 58/131 (44.27%), Postives = 85/131 (64.89%), Query Frame = 1
Query:    4 NVNPTVFRMLKFFVVFVLVVHFIACSFWYIARHGDYSSSWAPDRDQYADAPMGDKYAKALVFALAVMYGNEEGAQNTIENVFMSLCYMIALVVNAVIIGSVNTLLANMDHTAVAKKTQMDGVNEYMRFRKV 396
            ++NP++ RML    +F+L  HFIACS+++I+      +SW P  D   ++P+  +YA A+ FA+ V   N+    NT E VF SL   + +V+NA IIGS   LLAN+D  A+A+K QMD +N+YMRF+KV
Sbjct:  182 SMNPSLLRMLSLTFIFLLSQHFIACSYYFISLRQSQWTSWQPSIDT-RESPLVRQYAHAIYFAIMVTTANDVSPTNTTEKVFTSLMLFVGIVINASIIGSAANLLANLDKVAIARKNQMDSINDYMRFKKV 311          
BLAST of mRNA_P-wetherbeei_contig15506.1.1 vs. uniprot
Match: A0A7S3XPC3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPC3_HETAK)

HSP 1 Score: 111 bits (278), Expect = 5.780e-26
Identity = 57/136 (41.91%), Postives = 88/136 (64.71%), Query Frame = 1
Query:    1 MNVNPTVFRMLKFFVVFVLVVHFIACSFWYIA----RHGDYSSSWAPDRDQYADAPMGDKYAKALVFALAVMYGNEEGAQNTIENVFMSLCYMIALVVNAVIIGSVNTLLANMDHTAVAKKTQMDGVNEYMRFRKV 396
            +N NP VFRM+KF  +F L++H +AC++  +     +HG Y++++  D     +  + ++Y+ +  F+LA   GN    ++T+   F S C ++  V+NA IIGS   LLAN+D TAVAKK Q+DG+NEY+RFRKV
Sbjct:  268 LNANPAVFRMIKFVCIFFLMIHLLACAYAGLILSGHKHGLYTAAYFGD-----ELSLSERYSASFHFSLAAASGNNMVPEDTVTEWFFSFCLLLGFVINATIIGSATNLLANLDATAVAKKAQIDGINEYLRFRKV 398          
BLAST of mRNA_P-wetherbeei_contig15506.1.1 vs. uniprot
Match: A0A6G0S5Z5_9STRA (Cyclic nucleotide-binding domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6G0S5Z5_9STRA)

HSP 1 Score: 109 bits (273), Expect = 2.930e-25
Identity = 51/131 (38.93%), Postives = 83/131 (63.36%), Query Frame = 1
Query:    4 NVNPTVFRMLKFFVVFVLVVHFIACSFWYIARHGDYSSSWAPDRDQYADAPMGDKYAKALVFALAVMYGNEEGAQNTIENVFMSLCYMIALVVNAVIIGSVNTLLANMDHTAVAKKTQMDGVNEYMRFRKV 396
            ++NP++ RMLK  V+F++  H IAC+++YI+ +    ++WAP  +  +   +G +Y  A  FA+ V   N+      IE +F S+   + +V+NA IIGS   LLAN+D   +A+K QMD +N+Y+RF+KV
Sbjct: 1001 SMNPSMLRMLKLTVIFIVSQHLIACTYYYISLNQSVETTWAPTHEVRSSGSLGQQYVDAFYFAIMVTTANDVNPTTPIEKLFTSVMLFVGIVINASIIGSAANLLANLDKEEIARKNQMDSINDYLRFKKV 1131          
BLAST of mRNA_P-wetherbeei_contig15506.1.1 vs. uniprot
Match: H3GG66_PHYRM (Cyclic nucleotide-binding domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GG66_PHYRM)

HSP 1 Score: 107 bits (268), Expect = 1.200e-24
Identity = 51/131 (38.93%), Postives = 83/131 (63.36%), Query Frame = 1
Query:    4 NVNPTVFRMLKFFVVFVLVVHFIACSFWYIARHGDYSSSWAPDRDQYADAPMGDKYAKALVFALAVMYGNEEGAQNTIENVFMSLCYMIALVVNAVIIGSVNTLLANMDHTAVAKKTQMDGVNEYMRFRKV 396
            ++NP++ RMLK  V+F++  H IAC+++YI+ +    ++WAP  +  +   +G +Y  A  FA+ V   N+      IE +F S+   + +V+NA IIGS   LLAN+D   +A+K QMD +N+Y+RF+KV
Sbjct:  196 SMNPSMLRMLKLTVIFLVSQHLIACTYYYISLNQSVETTWAPTHEIRSSDSLGQQYVDAFYFAIMVTTANDVNPTTPIEKLFTSVMLFVGIVINASIIGSAANLLANLDKEEIARKNQMDSINDYLRFKKV 326          
BLAST of mRNA_P-wetherbeei_contig15506.1.1 vs. uniprot
Match: H3H3Q4_PHYRM (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H3Q4_PHYRM)

HSP 1 Score: 107 bits (268), Expect = 1.210e-24
Identity = 51/131 (38.93%), Postives = 83/131 (63.36%), Query Frame = 1
Query:    4 NVNPTVFRMLKFFVVFVLVVHFIACSFWYIARHGDYSSSWAPDRDQYADAPMGDKYAKALVFALAVMYGNEEGAQNTIENVFMSLCYMIALVVNAVIIGSVNTLLANMDHTAVAKKTQMDGVNEYMRFRKV 396
            ++NP++ RMLK  V+F++  H IAC+++YI+ +    ++WAP  +  +   +G +Y  A  FA+ V   N+      IE +F S+   + +V+NA IIGS   LLAN+D   +A+K QMD +N+Y+RF+KV
Sbjct:  281 SMNPSMLRMLKLTVIFLVSQHLIACTYYYISLNQSVETTWAPTHEIRSSDSLGQQYVDAFYFAIMVTTANDVNPTTPIEKLFTSVMLFVGIVINASIIGSAANLLANLDKEEIARKNQMDSINDYLRFKKV 411          
BLAST of mRNA_P-wetherbeei_contig15506.1.1 vs. uniprot
Match: G4YSW5_PHYSP (Cyclic nucleotide-binding domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4YSW5_PHYSP)

HSP 1 Score: 107 bits (267), Expect = 1.820e-24
Identity = 51/131 (38.93%), Postives = 83/131 (63.36%), Query Frame = 1
Query:    4 NVNPTVFRMLKFFVVFVLVVHFIACSFWYIARHGDYSSSWAPDRDQYADAPMGDKYAKALVFALAVMYGNEEGAQNTIENVFMSLCYMIALVVNAVIIGSVNTLLANMDHTAVAKKTQMDGVNEYMRFRKV 396
            ++NP++ RMLK  V+F++  H IAC+++YI+ +    ++WAP+ +      +G +Y  A  FA+ V   N+      IE +F S+   + +V+NA IIGS   LLAN+D   +A+K QMD +N+Y+RF+KV
Sbjct:  462 SMNPSMLRMLKLTVIFLVSQHLIACTYYYISLNQSVETTWAPNHEIRHSNSLGQQYVDAFYFAIMVTTANDVNPTTPIEKLFTSVMLFVGIVINASIIGSAANLLANLDKEEIARKNQMDSINDYLRFKKV 592          
BLAST of mRNA_P-wetherbeei_contig15506.1.1 vs. uniprot
Match: A0A225VSM7_9STRA (Voltage-gated Ion Channel n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VSM7_9STRA)

HSP 1 Score: 106 bits (264), Expect = 4.610e-24
Identity = 51/131 (38.93%), Postives = 82/131 (62.60%), Query Frame = 1
Query:    4 NVNPTVFRMLKFFVVFVLVVHFIACSFWYIARHGDYSSSWAPDRDQYADAPMGDKYAKALVFALAVMYGNEEGAQNTIENVFMSLCYMIALVVNAVIIGSVNTLLANMDHTAVAKKTQMDGVNEYMRFRKV 396
            ++NP++ RMLK  V+F++  H IACS++YI+ +    ++WAP  +      +  +Y  A  FA+ V   N+    N +E +F S+   + +V+NA IIGS   LLAN+D   +A+K QMD +N+Y+RF+KV
Sbjct:  446 SMNPSMLRMLKLTVIFLVSQHLIACSYYYISLNQSVETTWAPTTEIRDSNSLSQQYIDAFYFAIMVTTANDVSPTNPLEKLFTSVMLFVGIVINASIIGSAANLLANLDKEEIARKNQMDSINDYLRFKKV 576          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15506.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN47_ECTSI3.550e-3452.67Cyclic nucleotide-binding domain-containing protei... [more]
A0A6H5JMZ2_9PHAE2.150e-3352.38Cyclic nucleotide-binding domain-containing protei... [more]
A0A2D4BLP4_PYTIN1.900e-2745.04Cyclic nucleotide-binding domain-containing protei... [more]
A0A2D4BKR1_PYTIN1.440e-2644.27Cyclic nucleotide-binding domain-containing protei... [more]
A0A7S3XPC3_HETAK5.780e-2641.91Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6G0S5Z5_9STRA2.930e-2538.93Cyclic nucleotide-binding domain-containing protei... [more]
H3GG66_PHYRM1.200e-2438.93Cyclic nucleotide-binding domain-containing protei... [more]
H3H3Q4_PHYRM1.210e-2438.93Cyclic nucleotide-binding domain-containing protei... [more]
G4YSW5_PHYSP1.820e-2438.93Cyclic nucleotide-binding domain-containing protei... [more]
A0A225VSM7_9STRA4.610e-2438.93Voltage-gated Ion Channel n=1 Tax=Phytophthora meg... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15506contigP-wetherbeei_contig15506:234..1060 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LN47
PFAMsIon_trans,Ion_trans_N,cNMP_binding
Model size396
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal anchor
Exons2
Evalue5.81e-35
EggNOG OGsKOG0498@1|root,KOG0498@2759|Eukaryota
Descriptionvoltage-gated potassium channel activity
Cds size396
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186058.4145691-CDS-P-wetherbeei_contig15506:233..4071683186058.4145691-CDS-P-wetherbeei_contig15506:233..407Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15506 234..407 -
1683186058.4246087-CDS-P-wetherbeei_contig15506:838..10601683186058.4246087-CDS-P-wetherbeei_contig15506:838..1060Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15506 839..1060 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15506.1.1prot_P-wetherbeei_contig15506.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15506 234..1060 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15506.1.1

>prot_P-wetherbeei_contig15506.1.1 ID=prot_P-wetherbeei_contig15506.1.1|Name=mRNA_P-wetherbeei_contig15506.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=132bp
MNVNPTVFRMLKFFVVFVLVVHFIACSFWYIARHGDYSSSWAPDRDQYAD
APMGDKYAKALVFALAVMYGNEEGAQNTIENVFMSLCYMIALVVNAVIIG
SVNTLLANMDHTAVAKKTQMDGVNEYMRFRKV
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mRNA from alignment at P-wetherbeei_contig15506:234..1060-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15506.1.1 ID=mRNA_P-wetherbeei_contig15506.1.1|Name=mRNA_P-wetherbeei_contig15506.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=827bp|location=Sequence derived from alignment at P-wetherbeei_contig15506:234..1060- (Phaeothamnion wetherbeei SAG_119_79)
ATGAACGTGAACCCGACGGTGTTCCGCATGCTTAAGTTCTTCGTCGTGTT CGTGCTCGTTGTGCACTTCATCGCCTGCTCCTTCTGGTACATCGCCCGCC ACGGCGACTACTCTTCCAGCTGGGCTCCGGACCGGGACCAGTACGCCGAC GCACCCATGGGCGACAAGTACGCCAAGGCGCTCGTTTTTGCCCTAGCCGT CATGTACGGAAACGAGGAAGGGGTGAGTGATCCGTCCGCCCGGCTGGGAG GGTGTCGGTGCGTTTTGATTGGTTGATCCCCCACACCCCACACAAGAGCG TTCTGCGACGGAGTGTGGGCCCGATGGCAGCCGCCTGGTCGGCTGGCGCT GACGAGCGGCGAGTAATCCCATCACCCCTGCCAGTGCGGCGGCTGAAGGC GATGTGTTTGGTTCAGACCAAACCCGTGCAAGCACAAGCATACTTGCCAA CTGCCCAGCGTTTCGTCTTCAAGTGCCACAGTATTATCGATTGCATAGAG GCGCCGTTATTTCACCTGAAACATGTGCCGGAACCATCTGAAATATGTAC TGAAACCATGTCGTACAAAGCGACCAAACTTCCTGTTCGTAATCATGGCG TGGTTCGACTTTCGCCCGCTCTCGCCGGCCGATACGCAACAAATACGCTG CAGGCACAAAACACCATCGAAAATGTGTTCATGTCGCTGTGCTACATGAT CGCGCTTGTGGTAAACGCCGTGATCATCGGGTCCGTCAACACGCTTCTGG CCAACATGGACCACACTGCGGTGGCCAAGAAGACTCAGATGGACGGTGTC AACGAATATATGCGCTTCCGGAAGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15506:234..1060-

>mRNA_P-wetherbeei_contig15506.1.1 ID=mRNA_P-wetherbeei_contig15506.1.1|Name=mRNA_P-wetherbeei_contig15506.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig15506:234..1060- (Phaeothamnion wetherbeei SAG_119_79)
ATGAACGTGAACCCGACGGTGTTCCGCATGCTTAAGTTCTTCGTCGTGTT
CGTGCTCGTTGTGCACTTCATCGCCTGCTCCTTCTGGTACATCGCCCGCC
ACGGCGACTACTCTTCCAGCTGGGCTCCGGACCGGGACCAGTACGCCGAC
GCACCCATGGGCGACAAGTACGCCAAGGCGCTCGTTTTTGCCCTAGCCGT
CATGTACGGAAACGAGGAAGGGGCACAAAACACCATCGAAAATGTGTTCA
TGTCGCTGTGCTACATGATCGCGCTTGTGGTAAACGCCGTGATCATCGGG
TCCGTCAACACGCTTCTGGCCAACATGGACCACACTGCGGTGGCCAAGAA
GACTCAGATGGACGGTGTCAACGAATATATGCGCTTCCGGAAGGTG
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