mRNA_P-wetherbeei_contig1549.2.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1549.2.2
Unique NamemRNA_P-wetherbeei_contig1549.2.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1549.2.2 vs. uniprot
Match: D8LFE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE4_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 6.640e-47
Identity = 124/180 (68.89%), Postives = 138/180 (76.67%), Query Frame = 3
Query:  309 MPVDTELHKAAHNGDLAKVKELVESGEIDVNAPGAADRRPLHRAAGGNHVDIMGFLLDKGAPIDQADKSGRTALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGPPVLEALCNEKNADGKNCFDLAVAGQHKAVCKLLKDMGDPNAASAACVIS 848
            MP DTELHKAAHNGDL KVK+LVE GEI VN PGAA+RR LHRAAGGNHV+IM +L++KGAP+DQ DKSG    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                  A G  VLE +CN+++A GK  FD+A AGQHKA C LLK++GDPNA SAAC IS
Sbjct:    1 MPTDTELHKAAHNGDLGKVKQLVEDGEIAVNEPGAAERRALHRAAGGNHVEIMNYLMEKGAPVDQTDKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACEGGRVDVVRSLMEKATALG--VLEEMCNKQDAGGKTPFDMAAAGQHKATCSLLKELGDPNAQSAACTIS 178          
BLAST of mRNA_P-wetherbeei_contig1549.2.2 vs. uniprot
Match: A0A836CN67_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN67_9STRA)

HSP 1 Score: 138 bits (347), Expect = 6.290e-36
Identity = 129/180 (71.67%), Postives = 142/180 (78.89%), Query Frame = 3
Query:  309 MPVDTELHKAAHNGDLAKVKELVESGEIDVNAPGAADRRPLHRAAGGNHVDIMGFLLDKGAPIDQADKSGRTALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGPPVLEALCNEKNADGKNCFDLAVAGQHKAVCKLLKDMGDPNAASAACVIS 848
            MP DTELHKAAHNGDLAK KEL+E G  +VN PGA+DRR LHRAAGGNHV ++ +LL K               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  A     L+ALCNEK+++ K  FDLA  G+H+AVCKLLK+MGDPNA SAACVIS
Sbjct:    1 MPTDTELHKAAHNGDLAKCKELIEGGGAEVNEPGASDRRALHRAAGGNHVAVIEYLLSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAAAS--LDALCNEKDSNAKGAFDLAAEGKHQAVCKLLKEMGDPNAQSAACVIS 178          
BLAST of mRNA_P-wetherbeei_contig1549.2.2 vs. uniprot
Match: A0A6H5JSR0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSR0_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 2.110e-33
Identity = 59/74 (79.73%), Postives = 66/74 (89.19%), Query Frame = 3
Query:  309 MPVDTELHKAAHNGDLAKVKELVESGEIDVNAPGAADRRPLHRAAGGNHVDIMGFLLDKGAPIDQADKSGRTAL 530
            MP DTELHKAAHNGDL KVK+LVE GEI VN PGAA+RR LHRAAGGNHV+IM +L++KGAP+DQ DKSGRTAL
Sbjct:    1 MPTDTELHKAAHNGDLGKVKQLVEDGEIAVNEPGAAERRALHRAAGGNHVEIMNYLMEKGAPVDQTDKSGRTAL 74          
BLAST of mRNA_P-wetherbeei_contig1549.2.2 vs. uniprot
Match: A0A836CGQ7_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGQ7_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.870e-28
Identity = 122/180 (67.78%), Postives = 132/180 (73.33%), Query Frame = 3
Query:  309 MPVDTELHKAAHNGDLAKVKELVESGEIDVNAPGAADRRPLHRAAGGNHVDIMGFLLDKGAPIDQADKSGRTALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGPPVLEALCNEKNADGKNCFDLAVAGQHKAVCKLLKDMGDPNAASAACVIS 848
            MP DTELHKAAHNGDLAK KEL E+G +DVN PGAADRR LHRAAGGNH  ++ +LL KGAP            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  A     LEA+CNEK+++ K                LLK+MGDPNA SAAC IS
Sbjct:    1 MPTDTELHKAAHNGDLAKCKELTEAGGVDVNEPGAADRRALHRAAGGNHTGVIEYLLSKGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAAA--TLEAMCNEKDSNEKXXXXXXXXXXXXXXXXLLKEMGDPNAQSAACTIS 178          
BLAST of mRNA_P-wetherbeei_contig1549.2.2 vs. uniprot
Match: A0A7S4S639_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S639_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.450e-25
Identity = 120/181 (66.30%), Postives = 139/181 (76.80%), Query Frame = 3
Query:  309 MPVDTELHKAAHNGDLAKVKELVESGEIDVNAPGAADRRPLHRAAGGNHVDIMGFLLDKGAPIDQADKSGRTALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGPPVLEALCNEKNADGKNCFDLAVAGQHKAVCKLLKDMGDPNAASAA-CVIS 848
            MP DT LHKA+HNGD  +V  L+E+GEIDVN PGA++RRPLHRAAGGNHV I  +LL  GA +D AD+S     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   G   LE L   +  DGK   ++A  G++K + K LK+ GDP+A S+A C+IS
Sbjct:    1 MPFDTALHKASHNGDFKQVTALIEAGEIDVNTPGASERRPLHRAAGGNHVKICEYLLSNGAGVDLADRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---GNKKLE-LFRAQRDDGKTALNIAKEGKNKGIIKALKEAGDPSATSSAICIIS 177          
BLAST of mRNA_P-wetherbeei_contig1549.2.2 vs. uniprot
Match: A0A7S2CQ70_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CQ70_9STRA)

HSP 1 Score: 109 bits (272), Expect = 6.100e-25
Identity = 110/185 (59.46%), Postives = 125/185 (67.57%), Query Frame = 3
Query:  309 MPVDTELHKAAHNGDLAKVKELVESGE-----IDVNAPGAADRRPLHRAAGGNHVDIMGFLLD-KGAPIDQADKSGRTALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGPPVLEALCNEKNADGKNCFDLAVAGQHKAVCKLLKDMGDPNAASAACVI 845
            MPVDT LHKA H+GD+ ++K++ E  +     IDVNA GA DRRPLHRAAGGNH D + FL+D K A +DQ DK G    XXXXXXXXXXXXXXXX              XXXXXXXXXXXXXXXXXXXXXX         ALC  K+++ K   DLAVAG+HKAV   LK  GDP AAS+ACVI
Sbjct:    1 MPVDTPLHKACHSGDINEIKKVFEEHDPDEDPIDVNAAGAQDRRPLHRAAGGNHKDAVAFLIDEKQATVDQVDKPGXXXXXXXXXXXXXXXXXXXXDRGADITAATASGMXXXXXXXXXXXXXXXXXXXXXXXX-----KLALCAAKDSNDKVPCDLAVAGKHKAVVTALKGAGDPVAASSACVI 180          
BLAST of mRNA_P-wetherbeei_contig1549.2.2 vs. uniprot
Match: A0A812UQV1_SYMMI (Kidins220b protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UQV1_SYMMI)

HSP 1 Score: 95.9 bits (237), Expect = 2.980e-20
Identity = 104/153 (67.97%), Postives = 118/153 (77.12%), Query Frame = 3
Query:  390 IDVNAPGAADRRPLHRAAGGNHVDIMGFLLDKGAPIDQADKSGRTALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGPPVLEALCNEKNADGKNCFDLAVAGQHKAVCKLLKDMGDPNAASAACVIS 848
            +DVN  GA+DRRP+HRAAG  H+DI  +L+ KGA ++Q DKSG    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      A+    +   L N KN DGK  FD+AVAG+ +AVC+ LKD GD NAASAACVIS
Sbjct:    1 MDVNCAGASDRRPIHRAAGAGHLDICEYLVSKGALVNQPDKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELLAFVASD-EAIRTELTNLKNQDGKTAFDVAVAGKQQAVCQALKDGGDANAASAACVIS 152          
BLAST of mRNA_P-wetherbeei_contig1549.2.2 vs. uniprot
Match: A0A485L282_9STRA (Aste57867_14389 protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A485L282_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.300e-19
Identity = 111/179 (62.01%), Postives = 125/179 (69.83%), Query Frame = 3
Query:  309 MPVDTELHKAAHNGDLAKVKELVESGEIDVNAPGAADRRPLHRAAGGNHVDIMGFLLDKGAPIDQADKSGRTALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGPPVLEALCNEKNADGKNCFDLAVAGQHKAVCKLLKDMGDPNAASAACVI 845
            MP DT LHKAAHNGD   V +++E   +DVNAPGAADRRPLHRAAGGNH ++                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         +A    K+ DGK  FDLA+AG+H AV K +K++GDP A SA+C I
Sbjct:    1 MPSDTPLHKAAHNGDKGAVLQILEDPSMDVNAPGAADRRPLHRAAGGNHAELCVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------KADSTLKDKDGKLAFDLAMAGKHNAVVKAMKELGDPAAQSASCAI 170          
BLAST of mRNA_P-wetherbeei_contig1549.2.2 vs. uniprot
Match: D7FGW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGW9_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 2.390e-19
Identity = 44/74 (59.46%), Postives = 57/74 (77.03%), Query Frame = 3
Query:  309 MPVDTELHKAAHNGDLAKVKELVESGEIDVNAPGAADRRPLHRAAGGNHVDIMGFLLDKGAPIDQADKSGRTAL 530
            MP+DTELHK+AH GD+  V++LVE+GE++VN  GA DR  LHRAAG NHV I+ +LL  GAP++ AD+  RT L
Sbjct:    1 MPLDTELHKSAHKGDIQSVRQLVETGEVNVNQKGAQDRTALHRAAGANHVGIIIYLLQAGAPVNTADRCLRTPL 74          
BLAST of mRNA_P-wetherbeei_contig1549.2.2 vs. uniprot
Match: W7TUF1_9STRA (Ankyrin unc44 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TUF1_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 4.210e-19
Identity = 101/158 (63.92%), Postives = 117/158 (74.05%), Query Frame = 3
Query:  372 LVESGEIDVNAPGAADRRPLHRAAGGNHVDIMGFLLDKGAPIDQADKSGRTALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGPPVLEALCNEKNADGKNCFDLAVAGQHKAVCKLLKDMGDPNAASAACVI 845
            ++E  E DVN  GA DRRPLHRAAG NH+++  +L+++GA IDQADK      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             +AL N ++AD K  FDLA+ G+H AV K LK+MGDPNA  AAC +
Sbjct:    1 MIEGKEFDVNEAGAGDRRPLHRAAGSNHIEVCRYLIERGAKIDQADKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLTKGDK------DALVNARDADNKTPFDLAMQGKHAAVVKALKEMGDPNAQGAACCV 152          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1549.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFE4_ECTSI6.640e-4768.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CN67_9STRA6.290e-3671.67Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
A0A6H5JSR0_9PHAE2.110e-3379.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CGQ7_9STRA1.870e-2867.78Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
A0A7S4S639_9STRA1.450e-2566.30Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S2CQ70_9STRA6.100e-2559.46Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A812UQV1_SYMMI2.980e-2067.97Kidins220b protein n=1 Tax=Symbiodinium microadria... [more]
A0A485L282_9STRA1.300e-1962.01Aste57867_14389 protein n=4 Tax=Aphanomyces TaxID=... [more]
D7FGW9_ECTSI2.390e-1959.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7TUF1_9STRA4.210e-1963.92Ankyrin unc44 n=1 Tax=Nannochloropsis gaditana Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1549contigP-wetherbeei_contig1549:2279..4820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LFE4
Preferred nameTIP1
PFAMsAnk,Ank_2,Ank_3,Ank_4,DHHC
Model size1085
Max annot lvl2759|Eukaryota
KEGG koko:K20032
KEGG TC9.B.37.1,9.B.37.3
Hectar predicted targeting categoryother localisation
GOsGO:0000035,GO:0000902,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0008150,GO:0009653,GO:0009826,GO:0009932,GO:0009987,GO:0012505,GO:0016043,GO:0016049,GO:0031410,GO:0031982,GO:0031984,GO:0032502,GO:0032989,GO:0040007,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0048589,GO:0048856,GO:0048869,GO:0060560,GO:0071840,GO:0097708,GO:0098791
Exons4
Evalue1.56e-49
EggNOG OGsCOG5273@1|root,KOG0509@2759|Eukaryota
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-07_005970.1
EC2.3.1.225
Descriptionprotein-cysteine S-palmitoyltransferase activity
Cds size543
COG categoryZ
BRITEko00000,ko01000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1549.2.2prot_P-wetherbeei_contig1549.2.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1549 2587..4586 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186057.995629-UTR-P-wetherbeei_contig1549:2278..25861683186057.995629-UTR-P-wetherbeei_contig1549:2278..2586Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1549 2279..2586 +
1683186058.0445588-UTR-P-wetherbeei_contig1549:4586..48201683186058.0445588-UTR-P-wetherbeei_contig1549:4586..4820Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1549 4587..4820 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186058.007478-CDS-P-wetherbeei_contig1549:2586..26401683186058.007478-CDS-P-wetherbeei_contig1549:2586..2640Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1549 2587..2640 +
1683186058.016637-CDS-P-wetherbeei_contig1549:3354..34951683186058.016637-CDS-P-wetherbeei_contig1549:3354..3495Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1549 3355..3495 +
1683186058.0261197-CDS-P-wetherbeei_contig1549:4002..42061683186058.0261197-CDS-P-wetherbeei_contig1549:4002..4206Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1549 4003..4206 +
1683186058.035424-CDS-P-wetherbeei_contig1549:4442..45861683186058.035424-CDS-P-wetherbeei_contig1549:4442..4586Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1549 4443..4586 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1549.2.2

>prot_P-wetherbeei_contig1549.2.2 ID=prot_P-wetherbeei_contig1549.2.2|Name=mRNA_P-wetherbeei_contig1549.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=181bp
MPVDTELHKAAHNGDLAKVKELVESGEIDVNAPGAADRRPLHRAAGGNHV
DIMGFLLDKGAPIDQADKSGRTALHWAAISGCKEATECLLGKGAAFNVKT
GSGDTPLSSAAEGGRVEVVRLLMEKAAAGGPPVLEALCNEKNADGKNCFD
LAVAGQHKAVCKLLKDMGDPNAASAACVIS*
back to top

mRNA from alignment at P-wetherbeei_contig1549:2279..4820+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1549.2.2 ID=mRNA_P-wetherbeei_contig1549.2.2|Name=mRNA_P-wetherbeei_contig1549.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2542bp|location=Sequence derived from alignment at P-wetherbeei_contig1549:2279..4820+ (Phaeothamnion wetherbeei SAG_119_79)
CAAGAAGTAGCGTCAAGTGAACGATTCGCGCTCGTTTGCACCGCCCACAC ATTCCTATTGCAACTCTCGCGCTGGCTGATCGACAACATCTTCTAAAAAC AACGACGAACGCCCGCGTCCCCATTCCTTTGTGGCAAGCGCACACCGCCA TTGTTGACAGTGGAAGAAGAGGCGGCTGCAGCTGGTGGCGGCCTAGGAGC CGCTGCCGCGACGGAAGTAAAAACGGCAGAGCTGCTGAGAAGGCGGGACG GGAGAACGGCCTCTGGCGGGAGCAGCGTCGGTGATAGCCTGAACTCGGCG CGTCGGCTATGCCCGTAGACACTGAGCTGCACAAGGCAGCCCACAATGGC GACCTTGCGAAGGTGCGTAAGAGTGGTGAGGTTCGGGCTGCATGGCTGTC AAGGTTTTCAGTCCAATATTTCTCCTTCATGGTCTTGGAAACGAGGGATT CCCTTAGAATGGTGTCACTTATGCAGGCTCTCCGAAACGCTGTGTGTACT TTGTCCTGTTTAGCAGGCTTTGAACACCGTGCGCTGTATCGGGGCGTGTA GCCATTGTTCGTCGTTCATAATACGCTTGCGGGATCGATTCTCAGAACCT TGGCCATGCAATCAGCATTTGGGACCGGCGTGCATTTCCCGTTCTCGATT GTTCTGTTCGCTTTCGGGTCGCCCGTATATTCGGATCCCGTTCCGGCACC GCAAGAGGCAATTTCTACCGTGCCGAACGTTCCCGGAATGTAGACGCTTG CATCACCCTGGCGGCCCTTAAAATCTTAACAGGCTATGTGCTAACGTGTC CAAAGCCAAGGCGTTTTGGAAAGCCAGAACTGGCGCCGTGCCGACGGCAC CATCACGAACCTTTTTACCTGTGTTTCCTACTAGCTCATTCGCGCCGCGC ATTCGGCCGACAGTGGCGTCTGTTGCCGGTGGCCTTCCGTCTCCCCATTT ATGACCGCCGCAAATTGGCTGCCCGCTTTTCCGTCTGGGTGCATATAACC TCTTTTCTTTTGTGATGTTCTATCCATCTTCCCTCCATTTTTACGACCTG TTCATCCAAAACCTGTCTGGCGGCAGGTAAAGGAGCTGGTGGAGTCAGGG GAGATTGACGTCAATGCGCCTGGAGCCGCGGACCGACGACCGCTCCACCG CGCCGCCGGCGGGAACCACGTTGACATTATGGGTTTCCTTCTCGATAAGG GAGCGCCAATAGACCAGGTAAGCGCAAATATTGAGCCGACGTCGCCCGCT TGCGACGTTTCTTGCTACCAGCAGCCGCTGCCCTCATTTTTGCCGTCGTT GCCGGCGAGAGCCATTTCTATCGGCGGTGAAACATTCATGAGTATGATGC AGCTTGGCCGTCCGGGTAGTTGTTTGATAACGCTTCGTGCGAACTAGGAT ACAACGCAAGAGCAAATTGAAATGTTGAAATCCTTTTAAATACGTTGCAC TTTGCATGCTCTTCGCGTCTACTTTATAAGCATACAGCGTGATTCAATTG CGGCTGGTGATGCCGCCACCAAACCTAGAATGCCACGAAGCAGCGTCCCT ATCTGGTACCGCCAGCAGTCGCGCGCTGCCGCCGCCAATATGGTTGCCAC GACCGCGACAGGACTCTTATCTTTTCCAGAGACTCTATTTTCCTTTGTTC ATTGCATTCTGGTGCCCACCTTTTTATTCCTCGTCCCTCTCCTACCCTCC GTTCTACCTCTTCCCGTTCTCCAGGCGGACAAGAGTGGGCGAACAGCGTT GCACTGGGCGGCCATCAGCGGGTGCAAAGAGGCGACGGAGTGCCTGCTGG GGAAAGGCGCTGCCTTCAATGTCAAGACAGGCAGTGGGGACACGCCGCTC TCGTCGGCGGCAGAGGGCGGCCGCGTTGAGGTCGTGCGGCTGCTCATGGA GAAGGCGGCGGCGGGCGGACCACCAGTGGTGAGTGGCATTCTAGATGTTT GTCGAGCCGGATTCGTTTTGCGTTAGCCCAAAGTGCTTTCTTCATGGTTT TTTGTGGGTTGTTGTGTGTTATGCAGACAATGCCGTCCCGGATGCTGATC TGCCCGGCCTCGCTCACCACTTGCCGAACGCTAACGTTTCACTTCCGATT TCTCTCTGCCGCCGCCACCGCGGCATTCCAAACGCGTTCCTGTCCCCCAT CCGCCACCCGGCAGTTGGAGGCCCTCTGCAACGAAAAAAACGCAGATGGC AAGAACTGCTTCGACCTGGCGGTGGCGGGGCAACACAAAGCCGTGTGCAA ACTCCTCAAAGACATGGGGGATCCAAACGCTGCGTCGGCGGCATGTGTAA TCTCTTAGGGGGGGGGAACCCACCACCGCCCCGCCCCGGACCAGCTTGGC GTCCGCCTGGAGCCGGCCAGTCATGTCGCGGTACCGGCGTAGTCTCGTTC CCGCCGGAGGCGGGGTCGATGGGTAGAGGCGGCGGCAAGAAAGGTTTCGG GGTTGTTAAACTACCAACCTGCACGCTTGTGCGAAGAAGACGCGGATACC AGTAGCGCCGAAACGAAGGCAGCGTTCTCTGGTTTGAGTTTC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1549:2279..4820+

>mRNA_P-wetherbeei_contig1549.2.2 ID=mRNA_P-wetherbeei_contig1549.2.2|Name=mRNA_P-wetherbeei_contig1549.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=543bp|location=Sequence derived from alignment at P-wetherbeei_contig1549:2279..4820+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCGTAGACACTGAGCTGCACAAGGCAGCCCACAATGGCGACCTTGC
GAAGGTAAAGGAGCTGGTGGAGTCAGGGGAGATTGACGTCAATGCGCCTG
GAGCCGCGGACCGACGACCGCTCCACCGCGCCGCCGGCGGGAACCACGTT
GACATTATGGGTTTCCTTCTCGATAAGGGAGCGCCAATAGACCAGGCGGA
CAAGAGTGGGCGAACAGCGTTGCACTGGGCGGCCATCAGCGGGTGCAAAG
AGGCGACGGAGTGCCTGCTGGGGAAAGGCGCTGCCTTCAATGTCAAGACA
GGCAGTGGGGACACGCCGCTCTCGTCGGCGGCAGAGGGCGGCCGCGTTGA
GGTCGTGCGGCTGCTCATGGAGAAGGCGGCGGCGGGCGGACCACCAGTGT
TGGAGGCCCTCTGCAACGAAAAAAACGCAGATGGCAAGAACTGCTTCGAC
CTGGCGGTGGCGGGGCAACACAAAGCCGTGTGCAAACTCCTCAAAGACAT
GGGGGATCCAAACGCTGCGTCGGCGGCATGTGTAATCTCTTAG
back to top