mRNA_P-wetherbeei_contig1548.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1548.2.1
Unique NamemRNA_P-wetherbeei_contig1548.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1548.2.1 vs. uniprot
Match: A0A835ZAD6_9STRA (Homoserine dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAD6_9STRA)

HSP 1 Score: 245 bits (625), Expect = 3.510e-77
Identity = 121/164 (73.78%), Postives = 135/164 (82.32%), Query Frame = 1
Query:   13 NKLSVFVSPVIVPLNLPIAAARGAGNIVSITSSNLGASSYAGPGAGRFPTANSVASDLVRLALGHASPPFPYDRDWAMEPDFTAAFYCRITCKDGLGIIKRVGELAEVNGVSIHAIHQNPIEDPAHVDFVVTTDPCRLSQIEKFTDSIEKEAWAKQRPLFMSLL 504
            +KLSVFVSPV+VPL  PIA ARGAGNIV + S N+  +SY+GPGAGRFPTANSV SD+VR+A G A+PPFPYD+DW  E DFT  FY RITCKD LGIIKRVGELAE NGVSIHAI QNPIED  +VDFVVTT+PCRLSQ+E F  SI KE WAK +PL MSLL
Sbjct:  266 SKLSVFVSPVVVPLTSPIAGARGAGNIVVVNSRNVDTTSYSGPGAGRFPTANSVVSDIVRIARGMATPPFPYDKDWTFETDFTGEFYTRITCKDALGIIKRVGELAEENGVSIHAILQNPIEDRDNVDFVVTTEPCRLSQVESFCSSIAKERWAKNKPLCMSLL 429          
BLAST of mRNA_P-wetherbeei_contig1548.2.1 vs. uniprot
Match: D7FNL8_ECTSI (Homoserine dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNL8_ECTSI)

HSP 1 Score: 226 bits (576), Expect = 4.030e-69
Identity = 109/167 (65.27%), Postives = 135/167 (80.84%), Query Frame = 1
Query:    4 PGQNKLSVFVSPVIVPLNLPIAAARGAGNIVSITSSNLGASSYAGPGAGRFPTANSVASDLVRLALGHASPPFPYDRDWAMEPDFTAAFYCRITCKDGLGIIKRVGELAEVNGVSIHAIHQNPIEDPAHVDFVVTTDPCRLSQIEKFTDSIEKEAWAKQRPLFMSLL 504
            P   KLSVFVSPV+VPL+ PIA+ARGAGNIVS+ S N+G +S++GPGAGR+PTANSV +D+VRL  G    PFP+D++W +E DFT+AFY RITC D LGII+RVGELA  NGVSIHAI QNPIED  +VDFVVTTDPC+ SQ+++ + SI +E WAK  PL ++LL
Sbjct:  327 PDGEKLSVFVSPVLVPLSHPIASARGAGNIVSVDSKNMGTASFSGPGAGRYPTANSVVNDIVRLGTGKVGSPFPFDKEWELESDFTSAFYLRITCSDDLGIIQRVGELAAENGVSIHAILQNPIEDVDNVDFVVTTDPCKQSQVDELSSSIGQEKWAKGVPLILTLL 493          
BLAST of mRNA_P-wetherbeei_contig1548.2.1 vs. uniprot
Match: W7TUB9_9STRA (Homoserine dehydrogenase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUB9_9STRA)

HSP 1 Score: 189 bits (480), Expect = 1.680e-55
Identity = 97/167 (58.08%), Postives = 120/167 (71.86%), Query Frame = 1
Query:    4 PGQNKLSVFVSPVIVPLNLPIAAARGAGNIVSITSSNLGASSYAGPGAGRFPTANSVASDLVRLALGHASPPFPYDRDWAMEPDFTAAFYCRITCKDGLGIIKRVGELAEVNGVSIHAIHQNPIEDPAHVDFVVTTDPCRLSQIEKFTDSIEKEAWAKQRPLFMSLL 504
            P   KLSV VSP IVP   PIA   G+ NIV+I+S NL +SSY GPGAGR+PTANS+ SDLVRLA G   PPFP DR   +EPD+T+ FY R+  +D LG+I+ VGE+AE +GVSI+AI QNPI DP  + FVVTT+P R SQ++ F D IEK+ + K  PLF + L
Sbjct:  258 PDGKKLSVAVSPFIVPREHPIAGTNGSTNIVNISSRNLVSSSYIGPGAGRYPTANSIVSDLVRLARGLVGPPFPVDRAMPLEPDYTSRFYIRLRIRDQLGVIRVVGEIAERHGVSIYAILQNPISDPNDIHFVVTTEPARHSQVQAFADDIEKQDFTKGPPLFFAFL 424          
BLAST of mRNA_P-wetherbeei_contig1548.2.1 vs. uniprot
Match: A0A7S2WAR1_9STRA (Homoserine dehydrogenase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WAR1_9STRA)

HSP 1 Score: 188 bits (478), Expect = 2.980e-55
Identity = 92/167 (55.09%), Postives = 120/167 (71.86%), Query Frame = 1
Query:    4 PGQNKLSVFVSPVIVPLNLPIAAARGAGNIVSITSSNLGASSYAGPGAGRFPTANSVASDLVRLALGHASPPFPYDRDWAMEPDFTAAFYCRITCKDGLGIIKRVGELAEVNGVSIHAIHQNPIEDPAHVDFVVTTDPCRLSQIEKFTDSIEKEAWAKQRPLFMSLL 504
            P +  LSV+VSPV+VP   P+A+ARGA N+VS+ SSNLG+SSY GPGAGRFPTANSV SD++R+A+   +PPFP  R   +EPD++A FY RIT KD LGII  +G +A   GVSI ++ QNPI DPA VDFVVTTD C+ SQ++   D +  + +    PL M ++
Sbjct:  251 PSKESLSVYVSPVVVPQLHPVASARGATNVVSVASSNLGSSSYVGPGAGRFPTANSVVSDVLRVAMDTTTPPFPLQRTLPLEPDYSACFYVRITVKDQLGIIANIGAIAAKAGVSIFSVLQNPITDPAKVDFVVTTDQCKRSQVQAVADEVSAQLFTVSPPLVMPMV 417          
BLAST of mRNA_P-wetherbeei_contig1548.2.1 vs. uniprot
Match: A0A6V1RNX4_HETAK (Homoserine dehydrogenase n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RNX4_HETAK)

HSP 1 Score: 166 bits (420), Expect = 5.440e-46
Identity = 85/165 (51.52%), Postives = 116/165 (70.30%), Query Frame = 1
Query:   10 QNKLSVFVSPVIVPLNLPIAAARGAGNIVSITSSNLGASSYAGPGAGRFPTANSVASDLVRLALGHASPPFPYDRDWAMEPDFTAAFYCRITCKDGLGIIKRVGELAEVNGVSIHAIHQNPIEDPAHVDFVVTTDPCRLSQIEKFTDSIEKEAWAKQRPLFMSLL 504
            + +LSV+VSPV+VP   P+A+AR A NIV +TS N+G++SY GPGAGR+PTANSV +D+VR A G     FP D +  +E D+ + FY RI  +D LG+++ VGELAE +GVSI AI Q PI DP +VDFVVTT    +S IE F+  + K+ +  + P+ M+LL
Sbjct:  335 EGQLSVYVSPVVVPRTHPLASARMATNIVEVTSDNMGSTSYVGPGAGRYPTANSVVNDVVRAARGLTGTAFPVDAEARIEGDYVSKFYVRIKIRDQLGVVRVVGELAEKHGVSIDAILQLPITDPNNVDFVVTTGQTAVSSIEAFSADVSKQGFTLESPVVMTLL 499          
BLAST of mRNA_P-wetherbeei_contig1548.2.1 vs. uniprot
Match: B7G7E3_PHATC (Homoserine dehydrogenase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G7E3_PHATC)

HSP 1 Score: 164 bits (416), Expect = 6.750e-46
Identity = 87/169 (51.48%), Postives = 114/169 (67.46%), Query Frame = 1
Query:    7 GQNKLSVFVSPVIVPLNLPIAAARGAGNIVSITSSNLGASSYAGPGAGRFPTANSVASDLVRLALGHAS-PPFPY--DRDWAMEPDFTAAFYCRITCKDGLGIIKRVGELAEVNGVSIHAIHQNPIEDPAHVDFVVTTDPCRLSQIEKFTDSIEKEAWAKQRPLFMSLL 504
              + LSV+VSPV+V     +A+ RG+GN + +TS N+ A SY GPGAGRFPTANSV +D+VR+A G AS  PFP        +E ++ + FY RI  +DGLGII++ GELAE +GVSIHAI QNPI DP   DF VTTDPC LS ++ F + +  + + +  PL M LL
Sbjct:  268 NSSPLSVYVSPVMVSTKDMLASTRGSGNAIVVTSENMNACSYTGPGAGRFPTANSVVADIVRVANGQASVDPFPKVSPEPLELEDNYVSPFYVRIPFRDGLGIIRQTGELAERHGVSIHAILQNPIADPGSADFCVTTDPCPLSNVQAFCNDLAAQNFCRDPPLHMPLL 436          
BLAST of mRNA_P-wetherbeei_contig1548.2.1 vs. uniprot
Match: A0A7S1Z3Y2_TRICV (Homoserine dehydrogenase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z3Y2_TRICV)

HSP 1 Score: 160 bits (405), Expect = 2.140e-45
Identity = 82/166 (49.40%), Postives = 116/166 (69.88%), Query Frame = 1
Query:   10 QNKLSVFVSPVIVPLNLPIAAARGAGNIVSITSSNLGASSYAGPGAGRFPTANSVASDLVRLALGHASP-PFPYDRDWAMEPDFTAAFYCRITCKDGLGIIKRVGELAEVNGVSIHAIHQNPIEDPAHVDFVVTTDPCRLSQIEKFTDSIEKEAWAKQRPLFMSLL 504
               LSV+V+P +VP +  +A+ARG GN V++ S+NLG +SY GPGAGR+PTA+SV +D+ R+A G   P PFP +    ++ D+T+ FY RI+  D LGI++RVGE+AE  GVSIH+I QNPI+D    DFVVTT+ C+LSQ+    + +  E +A+  PL M +L
Sbjct:  147 DGALSVYVAPKVVPNSHLLASARGCGNAVAVDSANLGVASYTGPGAGRYPTASSVVADVRRIADGLCPPDPFPLESSIELDNDYTSNFYVRISFADSLGIVRRVGEIAERRGVSIHSILQNPIDDRGAADFVVTTEACKLSQVTGMCEDVAGEDFARGPPLCMPML 312          
BLAST of mRNA_P-wetherbeei_contig1548.2.1 vs. uniprot
Match: A0A7S2R140_9STRA (Homoserine dehydrogenase n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R140_9STRA)

HSP 1 Score: 163 bits (413), Expect = 3.930e-45
Identity = 84/166 (50.60%), Postives = 119/166 (71.69%), Query Frame = 1
Query:   10 QNKLSVFVSPVIVPLNLPIAAARGAGNIVSITSSNLGASSYAGPGAGRFPTANSVASDLVRLALGHAS-PPFPYDRDWAMEPDFTAAFYCRITCKDGLGIIKRVGELAEVNGVSIHAIHQNPIEDPAHVDFVVTTDPCRLSQIEKFTDSIEKEAWAKQRPLFMSLL 504
               LSV+V+P +VP +  +A+ RG+GN V++ S+NLG +SY GPGAGRFPTA+SV +D+ R+A   AS  PFP   + A++ D+T+ FY RI+  DGLGII+R+GEL+E +GVSI++I QNPI+D    DFVVTT+ CRL QI++    I  E + +  P+FM +L
Sbjct:  311 DGALSVYVAPKVVPNSHLLASIRGSGNAVAVDSANLGIASYTGPGAGRFPTASSVVADICRVASNTASIDPFPLHSNIALDSDYTSEFYIRISFSDGLGIIRRIGELSETHGVSINSILQNPIKDKLMADFVVTTEECRLMQIKELCRDIANEDFVRCDPVFMPML 476          
BLAST of mRNA_P-wetherbeei_contig1548.2.1 vs. uniprot
Match: A0A7S0AGA1_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AGA1_9STRA)

HSP 1 Score: 154 bits (388), Expect = 1.470e-44
Identity = 81/166 (48.80%), Postives = 114/166 (68.67%), Query Frame = 1
Query:   10 QNKLSVFVSPVIVPLNLPIAAARGAGNIVSITSSNLGASSYAGPGAGRFPTANSVASDLVRLALGHA-SPPFPYDRDWAMEPDFTAAFYCRITCKDGLGIIKRVGELAEVNGVSIHAIHQNPIEDPAHVDFVVTTDPCRLSQIEKFTDSIEKEAWAKQRPLFMSLL 504
               LSV+V+P ++P +  +AAA G GN +++ S NLG SSY GPGAGRFPTANSV +D+ R+A  +  S PFP     +++ D+ +AFY RI   DGLGI+++VGELAE +GVS+++I QN I D    D VVTT+ C+LSQ++     +EKE +A+  PL M L+
Sbjct:   10 DGDLSVYVAPKMIPTDHIMAAATGCGNAITVDSVNLGTSSYFGPGAGRFPTANSVVADICRVASDNCPSDPFPLRSTISIDNDYASAFYIRIPFIDGLGIVRKVGELAESHGVSVNSILQNAISDRMMADCVVTTEECKLSQVQALCAELEKEDFARAPPLCMPLV 175          
BLAST of mRNA_P-wetherbeei_contig1548.2.1 vs. uniprot
Match: D8LHG9_ECTSI (Homoserine dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHG9_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 2.180e-42
Identity = 85/175 (48.57%), Postives = 113/175 (64.57%), Query Frame = 1
Query:    7 GQNKLSVFVSPVIVPLNLPIAAARGAGNIVSITSSNLGASSYAGPGAGRFPTANSVASDLVRLA-LGHAS--PPFPYDRDWAMEPDFTAAFYCRITCKDGLGIIKRVGELAEVNGVSIHAIHQN------PIEDPAHVDFVVTTDPCRLSQIEKFTDSIEKEAWAKQRPLFMSLL 504
             ++KL+VFVSPV+VPL  P+A+ RG GN+V + S NL  S YAGPGAGR+PTANSV +D+VRLA LG A   PPFP +R   +EPDF A FY R+T  DGLG++  VG +A   GVS+H++ +         E+   V  VV TD C  SQ+  F D ++ +  A   P+ MS+L
Sbjct:  260 SKDKLAVFVSPVLVPLGGPLASTRGPGNVVVVRSENLTESVYAGPGAGRYPTANSVVNDIVRLARLGAAGTPPPFPLERPLELEPDFEACFYVRVTAADGLGVLSAVGAIASEAGVSVHSVLRGGEGXXXXXEEAGVVSLVVKTDSCLRSQVGAFVDGLKGKKVATADPVVMSIL 434          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1548.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZAD6_9STRA3.510e-7773.78Homoserine dehydrogenase n=1 Tax=Tribonema minus T... [more]
D7FNL8_ECTSI4.030e-6965.27Homoserine dehydrogenase n=1 Tax=Ectocarpus silicu... [more]
W7TUB9_9STRA1.680e-5558.08Homoserine dehydrogenase n=2 Tax=Monodopsidaceae T... [more]
A0A7S2WAR1_9STRA2.980e-5555.09Homoserine dehydrogenase n=1 Tax=Rhizochromulina m... [more]
A0A6V1RNX4_HETAK5.440e-4651.52Homoserine dehydrogenase n=3 Tax=Heterosigma akash... [more]
B7G7E3_PHATC6.750e-4651.48Homoserine dehydrogenase n=2 Tax=Phaeodactylum tri... [more]
A0A7S1Z3Y2_TRICV2.140e-4549.40Homoserine dehydrogenase (Fragment) n=1 Tax=Triere... [more]
A0A7S2R140_9STRA3.930e-4550.60Homoserine dehydrogenase n=1 Tax=Eucampia antarcti... [more]
A0A7S0AGA1_9STRA1.470e-4448.80Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
D8LHG9_ECTSI2.180e-4248.57Homoserine dehydrogenase n=2 Tax=Ectocarpus TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1548contigP-wetherbeei_contig1548:6137..6997 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FNL8
PFAMsHomoserine_dh,NAD_binding_3
Model size507
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue6.61e-70
EggNOG OGsCOG0460@1|root,2QT5B@2759|Eukaryota
DescriptionHomoserine dehydrogenase
Cds size507
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186057.6081848-CDS-P-wetherbeei_contig1548:6136..62651683186057.6081848-CDS-P-wetherbeei_contig1548:6136..6265Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1548 6137..6265 -
1683186057.6200237-CDS-P-wetherbeei_contig1548:6416..64791683186057.6200237-CDS-P-wetherbeei_contig1548:6416..6479Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1548 6417..6479 -
1683186057.629486-CDS-P-wetherbeei_contig1548:6682..69971683186057.629486-CDS-P-wetherbeei_contig1548:6682..6997Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1548 6683..6997 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1548.2.1prot_P-wetherbeei_contig1548.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1548 6137..6997 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1548.2.1

>prot_P-wetherbeei_contig1548.2.1 ID=prot_P-wetherbeei_contig1548.2.1|Name=mRNA_P-wetherbeei_contig1548.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=169bp
PPGQNKLSVFVSPVIVPLNLPIAAARGAGNIVSITSSNLGASSYAGPGAG
RFPTANSVASDLVRLALGHASPPFPYDRDWAMEPDFTAAFYCRITCKDGL
GIIKRVGELAEVNGVSIHAIHQNPIEDPAHVDFVVTTDPCRLSQIEKFTD
SIEKEAWAKQRPLFMSLL*
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mRNA from alignment at P-wetherbeei_contig1548:6137..6997-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1548.2.1 ID=mRNA_P-wetherbeei_contig1548.2.1|Name=mRNA_P-wetherbeei_contig1548.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=861bp|location=Sequence derived from alignment at P-wetherbeei_contig1548:6137..6997- (Phaeothamnion wetherbeei SAG_119_79)
CCTCCTGGGCAGAACAAGCTGTCGGTGTTCGTGTCGCCCGTGATAGTTCC CCTCAACCTCCCCATCGCCGCCGCTCGCGGCGCCGGCAACATCGTCTCCA TCACCTCGTCCAACCTCGGCGCGTCGTCCTATGCGGGTCCCGGCGCCGGC CGGTTCCCGACCGCCAACTCGGTGGCATCCGACCTGGTGCGGCTGGCGCT GGGACACGCGTCGCCGCCGTTCCCGTACGACCGGGACTGGGCGATGGAGC CCGACTTCACTGCAGCGTTCTACTGCCGCATCACGTGCAAGGACGGGCTC GGCATCATAAAGCGGGTATGTTTTGGGCGGCTGAGACGGTTTGGCTGCTT GGTGATTTCAGATGAAGTATATGGAGTGAGAAATTGGTTTGGAGTTTTCC CCCTTTTCTTGATCCTTTATCCAACTCCATCGAGAAACCTGCTACTTCTG TCAACTGATTCTTTATCGCTACAATGTACGCTTTTCTGGGGTTTCCCCTC TTTTTGGATCGTCTTCAGGTTGGCGAGCTGGCAGAGGTGAACGGCGTTTC GATCCACGCCATCCACCAGAACCCCATCGAGGTACGATCGATTAGAAACA AGACGCAAACCGTTCTCCGTCTCGACTGTTCTTGGAATATCCGTTGACCA TTCATTCTTTCAAATGTTCTCATGAGACCTTCCCTTTTCTCACATCGTGT CGTTCCGTCGTTCCGTCTTTCTTTCTTCTCAGGATCCGGCGCATGTGGAT TTCGTGGTGACGACGGACCCTTGCCGGCTGTCGCAGATTGAAAAGTTCAC CGACTCGATTGAGAAGGAGGCATGGGCCAAGCAGCGTCCGCTCTTCATGT CCCTCCTCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1548:6137..6997-

>mRNA_P-wetherbeei_contig1548.2.1 ID=mRNA_P-wetherbeei_contig1548.2.1|Name=mRNA_P-wetherbeei_contig1548.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig1548:6137..6997- (Phaeothamnion wetherbeei SAG_119_79)
CCTCCTGGGCAGAACAAGCTGTCGGTGTTCGTGTCGCCCGTGATAGTTCC
CCTCAACCTCCCCATCGCCGCCGCTCGCGGCGCCGGCAACATCGTCTCCA
TCACCTCGTCCAACCTCGGCGCGTCGTCCTATGCGGGTCCCGGCGCCGGC
CGGTTCCCGACCGCCAACTCGGTGGCATCCGACCTGGTGCGGCTGGCGCT
GGGACACGCGTCGCCGCCGTTCCCGTACGACCGGGACTGGGCGATGGAGC
CCGACTTCACTGCAGCGTTCTACTGCCGCATCACGTGCAAGGACGGGCTC
GGCATCATAAAGCGGGTTGGCGAGCTGGCAGAGGTGAACGGCGTTTCGAT
CCACGCCATCCACCAGAACCCCATCGAGGATCCGGCGCATGTGGATTTCG
TGGTGACGACGGACCCTTGCCGGCTGTCGCAGATTGAAAAGTTCACCGAC
TCGATTGAGAAGGAGGCATGGGCCAAGCAGCGTCCGCTCTTCATGTCCCT
CCTCTAG
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