mRNA_P-wetherbeei_contig15468.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15468.2.1
Unique NamemRNA_P-wetherbeei_contig15468.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15468.2.1 vs. uniprot
Match: A0A537FSC9_9PROT (LPS-assembly protein LptD n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537FSC9_9PROT)

HSP 1 Score: 314 bits (805), Expect = 8.590e-104
Identity = 154/270 (57.04%), Postives = 196/270 (72.59%), Query Frame = 1
Query:    1 YYLRAGYHNQDNVPVFDTGLADFNFSQMFNENRFAGGDRFGDANQLTLAVTSRLLFPSGQEFLRGTIGQRYSFSEQRVGITPTTPPTTGR-SDLLASVGARLAQYWNLDAATQYNQQQSRSTRSSLNLRYAPEFAKFINMGYRYTRDS---INQVDISGQWPVRPGWFALGRYNYSFLDGRLLEGVAGLEYNGGCWVLRLVAQRLQVATQLASTSFFVQLELNDLAQIGS-DPFDMLKRTISGYTPTNTRTDQAFPTSLQR-KLPFEQVY 792
            +Y+R  + NQD +P+FDT LADFN++Q+F+ENRFAGGDRFGDANQ TLA+T+R L   GQE  R T+GQRY F ++RVG++PT+       SD+LASVG RL +YW  DA TQYN +  RS R ++  RYAPE AK +N+ YR+ RD    + QVD+SGQWPV  GW+A+GRYNYS LD RLLEG+AG EYN GCWV R V QR+Q A Q++ST F+ QLE N + QIG+ D   +L+R++ GY+ TN R DQA      R +LPFEQVY
Sbjct:   83 FYVRVPFRNQDQMPLFDTALADFNYAQLFSENRFAGGDRFGDANQATLALTTRFLQSGGQEAFRATVGQRYYFEDERVGLSPTSELRNYHTSDVLASVGGRLFRYWTFDATTQYNPRDQRSQRYTVATRYAPELAKVVNLSYRFNRDPASPLKQVDVSGQWPVAAGWYAVGRYNYSILDQRLLEGLAGFEYNAGCWVFRAVVQRIQAAAQVSSTGFYFQLEFNGVGQIGTEDAVTLLRRSVPGYSVTNPR-DQALGLPASRPRLPFEQVY 351          
BLAST of mRNA_P-wetherbeei_contig15468.2.1 vs. uniprot
Match: A0A1F4D021_9PROT (LPS-assembly protein LptD n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_19 TaxID=1797504 RepID=A0A1F4D021_9PROT)

HSP 1 Score: 324 bits (830), Expect = 3.370e-103
Identity = 152/266 (57.14%), Postives = 195/266 (73.31%), Query Frame = 1
Query:    1 YYLRAGYHNQDNVPVFDTGLADFNFSQMFNENRFAGGDRFGDANQLTLAVTSRLLFPSGQEFLRGTIGQRYSFSEQRVGITPTTP-PTTGRSDLLASVGARLAQYWNLDAATQYNQQQSRSTRSSLNLRYAPEFAKFINMGYRYTRDSINQVDISGQWPVRPGWFALGRYNYSFLDGRLLEGVAGLEYNGGCWVLRLVAQRLQVATQLASTSFFVQLELNDLAQIGSDP-FDMLKRTISGYTPTNTRTDQAFPTSLQRKLPFEQVY 792
            YY+   Y NQD++PVFDT LADF++ Q+F ENRF+GGDRFGDANQ+TL +TSR L   GQE  R TIGQRY F  +RVG+TP +P  T+  SD+LA++G RL ++W+ DA TQYN+ Q R  R ++  RY+PE AK IN  YRY R++I Q+D+S QWPV  GW+ +GRYNYS LDGRLLEG+AG EYN GCWV R V QR+Q ATQ+AST+   QLE N + QIG+D   ++LKR + GY+ TN    +  P SL+ +LPFEQV+
Sbjct:  438 YYVYVPYRNQDHMPVFDTALADFSYPQLFTENRFSGGDRFGDANQVTLTLTSRFLHADGQEVFRATIGQRYYFENERVGLTPASPLRTSTESDVLAAIGGRLFRHWSFDAGTQYNRIQQRMERYTVGARYSPEIAKVINASYRYNRETIRQIDVSAQWPVAAGWYGVGRYNYSLLDGRLLEGLAGFEYNAGCWVFRTVVQRVQAATQVASTALVFQLEFNGVGQIGTDEAVELLKRNVPGYSVTNPSDARLAPPSLRPRLPFEQVF 703          
BLAST of mRNA_P-wetherbeei_contig15468.2.1 vs. uniprot
Match: A0A521VL90_9PROT (LPS-assembly protein LptD n=3 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521VL90_9PROT)

HSP 1 Score: 321 bits (822), Expect = 2.780e-101
Identity = 154/266 (57.89%), Postives = 194/266 (72.93%), Query Frame = 1
Query:    1 YYLRAGYHNQDNVPVFDTGLADFNFSQMFNENRFAGGDRFGDANQLTLAVTSRLLFPSGQEFLRGTIGQRYSFSEQRVGITPTTPPT-TGRSDLLASVGARLAQYWNLDAATQYNQQQSRSTRSSLNLRYAPEFAKFINMGYRYTRDSINQVDISGQWPVRPGWFALGRYNYSFLDGRLLEGVAGLEYNGGCWVLRLVAQRLQVATQLASTSFFVQLELNDLAQIGS-DPFDMLKRTISGYTPTNTRTDQAFPTSLQRKLPFEQVY 792
            +Y  A Y  QD VPVFDTGLADFN +Q+F+ENRFAGGDRFGDANQ+TLAVTSRLL  +G+E LR TIGQRY F ++RVG+TP T     G+SD+LA+VG R+AQ W+ D A QY+ QQSR+ R S ++RY PE AK ++  YR+ RD++ Q+D++ QWP+ PGW+A+GRYNYS L+ RLLEG+AG+EYN GCWV R V QRLQ A Q  ST+   QLE N    I S D  + LKR + GY  TN  +    P  L+++LPFEQVY
Sbjct:  510 FYAYAPYRAQDAVPVFDTGLADFNSAQLFSENRFAGGDRFGDANQVTLAVTSRLLDANGEEHLRATIGQRYYFRDERVGLTPATSLNGRGQSDILAAVGGRVAQQWSFDGALQYDPQQSRTERYSASVRYTPEIAKMVSASYRFNRDALRQIDVAAQWPIAPGWYAVGRYNYSLLERRLLEGIAGVEYNAGCWVFRTVFQRLQAAAQTTSTALMFQLEFNGFGGIRSGDVVEFLKRQVPGYAVTNPASGDLVPPGLRQRLPFEQVY 775          
BLAST of mRNA_P-wetherbeei_contig15468.2.1 vs. uniprot
Match: UPI0019ADAC40 (LPS-assembly protein LptD n=1 Tax=Candidatus Parcubacteria bacterium TaxID=2762014 RepID=UPI0019ADAC40)

HSP 1 Score: 316 bits (810), Expect = 8.950e-100
Identity = 157/270 (58.15%), Postives = 195/270 (72.22%), Query Frame = 1
Query:    1 YYLRAGYHNQDNVPVFDTGLADFNFSQMFNENRFAGGDRFGDANQLTLAVTSRLLFPSGQEFLRGTIGQRYSFSEQRVGITPTTPPTTGR--SDLLASVGARLAQYWNLDAATQYNQQQSRSTRSSLNLRYAPEFAKFINMGYRYTRDSI---NQVDISGQWPVRPGWFALGRYNYSFLDGRLLEGVAGLEYNGGCWVLRLVAQRLQVATQLASTSFFVQLELNDLAQIGSDP-FDMLKRTISGYTPTNTRTDQAFPTSLQRKLPFEQVY 792
            +Y+ A Y  QD +P+FDT LADFN++Q+F ENRFAGGDRFGDANQ+T+AVTSRL+   GQE  R T+GQRY F  +RVG+TPT+P   GR  SDLLAS+G R AQ W  D   QY+ Q +R  R+  ++RYAPE AK I+  YRY RD +    QVD+S QWPV+PGW+A+GR NYSFLD RLLEG+AGLEYN GCWV+R V QR+Q ATQ +ST  + Q+E N L QIGSD   D L+R I GY  TN    +  P S++ +LPFEQV+
Sbjct:  479 FYVYAPYRAQDQIPLFDTTLADFNYAQLFTENRFAGGDRFGDANQVTVAVTSRLVGNGGQELFRATLGQRYHFKNERVGLTPTSP-LRGRHQSDLLASIGGRFAQSWTFDNTIQYDPQNARVERAGASVRYAPEIAKVISASYRYNRDPVVPVRQVDLSAQWPVQPGWYAIGRVNYSFLDKRLLEGLAGLEYNAGCWVVRGVFQRVQAATQTSSTGVYFQIEFNGLGQIGSDDTVDFLRRNIPGYARTNPIDAKLVPQSMRPRLPFEQVF 747          
BLAST of mRNA_P-wetherbeei_contig15468.2.1 vs. uniprot
Match: A0A1F4ETF5_9PROT (LPS-assembly protein LptD n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 TaxID=1797505 RepID=A0A1F4ETF5_9PROT)

HSP 1 Score: 313 bits (803), Expect = 7.980e-99
Identity = 147/266 (55.26%), Postives = 194/266 (72.93%), Query Frame = 1
Query:    1 YYLRAGYHNQDNVPVFDTGLADFNFSQMFNENRFAGGDRFGDANQLTLAVTSRLLFPSGQEFLRGTIGQRYSFSEQRVGITPT-TPPTTGRSDLLASVGARLAQYWNLDAATQYNQQQSRSTRSSLNLRYAPEFAKFINMGYRYTRDSINQVDISGQWPVRPGWFALGRYNYSFLDGRLLEGVAGLEYNGGCWVLRLVAQRLQVATQLASTSFFVQLELNDLAQIGS-DPFDMLKRTISGYTPTNTRTDQAFPTSLQRKLPFEQVY 792
            +Y+   Y NQD +P+FDTGLADFN++Q+F+ENRFAGGDRFGDANQLT A+TSRLL   G E LR T+G+RY F  +RVG+TPT T      SDLL SVG R+ + W  D  TQ+N ++ R+ R   ++RYAPE AK ++  YR+ R+ + Q+D+SGQWPV PGW+A+GRYNYS LD RLLEG+ G+EYN GCWV R V QR+Q ATQ++ST+F++QLEL  + QIG+ D  + LKR + GY+ TN R     P S++ +LPF  V+
Sbjct:  473 FYVYVPYRNQDQIPLFDTGLADFNYAQLFSENRFAGGDRFGDANQLTAALTSRLLGADGLEELRATLGRRYYFRSERVGLTPTSTLRGYSGSDLLGSVGGRITRSWTFDLTTQFNPREGRAERYGASVRYAPEIAKVLSASYRFNRNILRQIDVSGQWPVGPGWYAVGRYNYSVLDKRLLEGLGGIEYNAGCWVFRAVVQRIQTATQVSSTAFYLQLELTGIGQIGTGDATEFLKRNVPGYSVTNPRDRTLVPPSMRERLPFGMVF 738          
BLAST of mRNA_P-wetherbeei_contig15468.2.1 vs. uniprot
Match: A0A1F4ENS7_9PROT (LPS-assembly protein LptD n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4ENS7_9PROT)

HSP 1 Score: 311 bits (797), Expect = 8.480e-98
Identity = 152/266 (57.14%), Postives = 186/266 (69.92%), Query Frame = 1
Query:    1 YYLRAGYHNQDNVPVFDTGLADFNFSQMFNENRFAGGDRFGDANQLTLAVTSRLLFPSGQEFLRGTIGQRYSFSEQRVGITPTTPPT-TGRSDLLASVGARLAQYWNLDAATQYNQQQSRSTRSSLNLRYAPEFAKFINMGYRYTRDSINQVDISGQWPVRPGWFALGRYNYSFLDGRLLEGVAGLEYNGGCWVLRLVAQRLQVATQLASTSFFVQLELNDLAQIGS-DPFDMLKRTISGYTPTNTRTDQAFPTSLQRKLPFEQVY 792
            YY+ A Y  QD VP+FDTGLADFN++Q+F+ENRF GGDRFGDA+ LTLA TSRLL P G+E LR TIGQR     +RVG+TP  P    G+SDLLASVG RLAQ W+ D A QYN Q+SR+ R S  +RY PE AK ++  YR+ RD++ Q+DI+ QWP+  GW+A+GRYNYS L+ +LLEG+AG+EYN GCWV R V QRLQ A Q  ST    QLE N    I S D  D LKR + GY  TN       P S++ +LPFEQV+
Sbjct:  487 YYVYAPYRAQDTVPLFDTGLADFNYAQLFSENRFVGGDRFGDADHLTLAATSRLLGPGGEEVLRATIGQRLYLKSERVGLTPAAPLRGRGQSDLLASVGGRLAQGWSFDGAAQYNLQRSRTERYSAAVRYTPEIAKLVSASYRFNRDALRQIDIAAQWPLSAGWYAIGRYNYSLLERQLLEGIAGIEYNAGCWVFRTVFQRLQAAAQTTSTVLMFQLEFNGFGGIQSGDVTDFLKRHVPGYASTNPGAGDLVPPSMRPRLPFEQVF 752          
BLAST of mRNA_P-wetherbeei_contig15468.2.1 vs. uniprot
Match: A0A537ED09_9PROT (LPS-assembly protein LptD n=4 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537ED09_9PROT)

HSP 1 Score: 311 bits (796), Expect = 9.550e-98
Identity = 152/270 (56.30%), Postives = 196/270 (72.59%), Query Frame = 1
Query:    1 YYLRAGYHNQDNVPVFDTGLADFNFSQMFNENRFAGGDRFGDANQLTLAVTSRLLFPSGQEFLRGTIGQRYSFSEQRVGITPTTPPTTGR-SDLLASVGARLAQYWNLDAATQYNQQQSRSTRSSLNLRYAPEFAKFINMGYRYTRDS---INQVDISGQWPVRPGWFALGRYNYSFLDGRLLEGVAGLEYNGGCWVLRLVAQRLQVATQLASTSFFVQLELNDLAQIGS-DPFDMLKRTISGYTPTNTRTDQAFPTSLQR-KLPFEQVY 792
            +Y+R  + +QD +P+FDT LADFN++Q+F+ENRFAGGDRFGDANQ TLA+T+R L   GQE  R T+GQRY F ++RVG+TP +       SD+LASVG RL +YW  DA TQYN +  RS R ++  RYAPE AK +N+ YR+ RD    + QVD+SGQWPV  GW+A+GRYNYS LD RLLEG+AG EYN GCWV R V QR+Q A Q++ST F+ QLE N + QIG+ +   +L+R++ GY+ TN R DQA  +   R +LPFEQVY
Sbjct:  474 FYVRVPFRSQDQMPLFDTALADFNYAQLFSENRFAGGDRFGDANQATLALTTRFLQSGGQEAFRATVGQRYYFEDERVGLTPISDLRNYHTSDVLASVGGRLFRYWTFDATTQYNPRDQRSQRYTVATRYAPELAKVVNLSYRFNRDPATPLKQVDVSGQWPVAAGWYAVGRYNYSILDQRLLEGLAGFEYNAGCWVFRAVVQRIQAAAQVSSTGFYFQLEFNGVGQIGTQEAVTLLRRSVPGYSVTNPR-DQALGSPASRPRLPFEQVY 742          
BLAST of mRNA_P-wetherbeei_contig15468.2.1 vs. uniprot
Match: A0A1F4F5L4_9PROT (LPS-assembly protein LptD n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 TaxID=1797501 RepID=A0A1F4F5L4_9PROT)

HSP 1 Score: 309 bits (792), Expect = 3.270e-97
Identity = 149/265 (56.23%), Postives = 189/265 (71.32%), Query Frame = 1
Query:    1 YYLRAGYHNQDNVPVFDTGLADFNFSQMFNENRFAGGDRFGDANQLTLAVTSRLLFPSGQEFLRGTIGQRYSFSEQRVGITPTTPPTTGRSDLLASVGARLAQYWNLDAATQYNQQQSRSTRSSLNLRYAPEFAKFINMGYRYTRDSINQVDISGQWPVRPGWFALGRYNYSFLDGRLLEGVAGLEYNGGCWVLRLVAQRLQVATQLASTSFFVQLELNDLAQIGSDP-FDMLKRTISGYTPTNTRTDQAFPTSLQRKLPFEQVY 792
            +Y+   Y NQD +P+FDT LADFNF Q+F ENRF GGDRFGDANQ TLA+TSR L  +GQE  R TIGQRY F ++RVG+      T+  SD+L SVG RL ++W  DA TQY++ Q  + R +  LRY PE AK +N  YR++R SI Q+D+S QWP+  GW+A+GRYNYSFLD RLLEG+AG+EYN GCWV R V QR+Q ATQ++ST FF QLE N + Q+G+D    +L R++ GY  TN R     P SL+ +LPFEQV+
Sbjct:  473 FYVYVPYRNQDQIPLFDTALADFNFPQLFTENRFGGGDRFGDANQATLALTSRFL-QAGQEAFRATIGQRYYFRDERVGLPGAPLRTSLESDVLGSVGGRLFRHWTFDATTQYSRHQQSAERYTAALRYNPEVAKVLNASYRFSRASIRQIDLSAQWPLAAGWYAVGRYNYSFLDKRLLEGLAGVEYNAGCWVFRAVVQRVQAATQVSSTGFFFQLEFNGVGQVGTDDAVALLSRSVPGYAVTNPRDPGLAPPSLRPRLPFEQVF 736          
BLAST of mRNA_P-wetherbeei_contig15468.2.1 vs. uniprot
Match: A0A521YZK0_9PROT (LPS-assembly protein LptD n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521YZK0_9PROT)

HSP 1 Score: 307 bits (787), Expect = 1.760e-96
Identity = 146/265 (55.09%), Postives = 189/265 (71.32%), Query Frame = 1
Query:    1 YYLRAGYHNQDNVPVFDTGLADFNFSQMFNENRFAGGDRFGDANQLTLAVTSRLLFPSGQEFLRGTIGQRYSFSEQRVGITPTTPPTTGRSDLLASVGARLAQYWNLDAATQYNQQQSRSTRSSLNLRYAPEFAKFINMGYRYTRDSINQVDISGQWPVRPGWFALGRYNYSFLDGRLLEGVAGLEYNGGCWVLRLVAQRLQVATQLASTSFFVQLELNDLAQIGSDPF-DMLKRTISGYTPTNTRTDQAFPTSLQRKLPFEQVY 792
            +Y+   Y NQD +P+FDT LADFNF Q+F ENRF GGDRFGDA+Q+TLA+TSR L  +GQE  R T+GQRY F ++RVG+      T+  SD+L SVG RL ++W  DA TQYN+ + R+ R +  LRY PE AK +N  YR++R +I Q+D+S QWPV  GW+A+GRYNYSFLD RLLEG+AG EYN GCW  R V QR+Q ATQ++ST FF QLE N + Q+G+D    +L R++ GY+ +N R     P S + KLPFEQV+
Sbjct:  472 FYVYVPYRNQDQLPLFDTSLADFNFPQLFTENRFGGGDRFGDADQVTLALTSRFL-RTGQEAFRATVGQRYYFKDERVGLPGAPLRTSLESDVLGSVGGRLFRHWTFDATTQYNRHEQRAERYTTALRYNPEVAKVLNASYRFSRGTIRQIDLSAQWPVAAGWYAVGRYNYSFLDKRLLEGLAGFEYNAGCWAFRAVMQRVQAATQVSSTGFFFQLEFNGVGQVGTDDVVKLLSRSVPGYSVSNPRDPALAPPSARAKLPFEQVF 735          
BLAST of mRNA_P-wetherbeei_contig15468.2.1 vs. uniprot
Match: A0A1F3YU71_9PROT (LPS-assembly protein LptD n=1 Tax=Betaproteobacteria bacterium RBG_16_66_20 TaxID=1797479 RepID=A0A1F3YU71_9PROT)

HSP 1 Score: 307 bits (786), Expect = 3.700e-96
Identity = 151/267 (56.55%), Postives = 194/267 (72.66%), Query Frame = 1
Query:    1 YYLRAGYHNQDNVPVFDTGLADFNFSQMFNENRFAGGDRFGDANQLTLAVTSRLLFPSGQEFLRGTIGQRYSFSEQRVGITPTTP-PTTGRSDLLASVGARLAQYWNLDAATQYNQQQSRSTRSSLNLRYAPEFAKFINMGYRYTRDS-INQVDISGQWPVRPGWFALGRYNYSFLDGRLLEGVAGLEYNGGCWVLRLVAQRLQVATQLASTSFFVQLELNDLAQIGSDPFD-MLKRTISGYTPTNTRTDQAFPTSLQRKLPFEQVY 792
            +Y+ A + +Q  +P+FDTG+ DFN++Q+F ENRFAGGDRFGDANQ+TLA +SR+L P+G+E LR T+GQRY FS++RVGITP+    T  +SDLLAS+G RL +  + D+A QYN Q SR+ R S++ R+APE AK ++  YR+ RD+ + Q+DI+GQWPV PGW+ALGR+NYS  D RLLEG+AGLEYN GCWV R   QR+Q A Q +ST  F QLE N    +GSD    MLKR+I GY  TN       P SL R LPFEQV+
Sbjct:  488 FYVYAPFRDQSRIPLFDTGVTDFNYAQIFTENRFAGGDRFGDANQITLAASSRILTPAGEELLRATVGQRYYFSDERVGITPSAALRTRDQSDLLASLGGRLGRNLSFDSAVQYNPQLSRAERYSVSARFAPEIAKVVSASYRFNRDTRLKQIDIAGQWPVAPGWYALGRWNYSVSDSRLLEGIAGLEYNAGCWVFRGAFQRIQAAAQTSSTGVFFQLEFNGFGGVGSDAITTMLKRSIPGYAVTNPAEGALVPPSL-RPLPFEQVF 753          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15468.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A537FSC9_9PROT8.590e-10457.04LPS-assembly protein LptD n=1 Tax=Betaproteobacter... [more]
A0A1F4D021_9PROT3.370e-10357.14LPS-assembly protein LptD n=1 Tax=Betaproteobacter... [more]
A0A521VL90_9PROT2.780e-10157.89LPS-assembly protein LptD n=3 Tax=Betaproteobacter... [more]
UPI0019ADAC408.950e-10058.15LPS-assembly protein LptD n=1 Tax=Candidatus Parcu... [more]
A0A1F4ETF5_9PROT7.980e-9955.26LPS-assembly protein LptD n=1 Tax=Betaproteobacter... [more]
A0A1F4ENS7_9PROT8.480e-9857.14LPS-assembly protein LptD n=2 Tax=unclassified Bet... [more]
A0A537ED09_9PROT9.550e-9856.30LPS-assembly protein LptD n=4 Tax=Betaproteobacter... [more]
A0A1F4F5L4_9PROT3.270e-9756.23LPS-assembly protein LptD n=1 Tax=Betaproteobacter... [more]
A0A521YZK0_9PROT1.760e-9655.09LPS-assembly protein LptD n=1 Tax=Betaproteobacter... [more]
A0A1F3YU71_9PROT3.700e-9656.55LPS-assembly protein LptD n=1 Tax=Betaproteobacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15468contigP-wetherbeei_contig15468:812..1606 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog640081.Dsui_1587
Preferred namelptD
PFAMsOstA,OstA_C
Model size795
Max annot lvl206389|Rhodocyclales
KEGG koko:K04744
KEGG TC1.B.42.1
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.53e-77
EggNOG OGsCOG1452@1|root,COG1452@2|Bacteria,1MUJC@1224|Proteobacteria,2VIJ7@28216|Betaproteobacteria,2KVBE@206389|Rhodocyclales
DescriptionTogether with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
Cds size795
COG categoryM
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186057.2727473-CDS-P-wetherbeei_contig15468:811..16061683186057.2727473-CDS-P-wetherbeei_contig15468:811..1606Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15468 812..1606 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15468.2.1prot_P-wetherbeei_contig15468.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15468 812..1606 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15468.2.1

>prot_P-wetherbeei_contig15468.2.1 ID=prot_P-wetherbeei_contig15468.2.1|Name=mRNA_P-wetherbeei_contig15468.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=265bp
YYLRAGYHNQDNVPVFDTGLADFNFSQMFNENRFAGGDRFGDANQLTLAV
TSRLLFPSGQEFLRGTIGQRYSFSEQRVGITPTTPPTTGRSDLLASVGAR
LAQYWNLDAATQYNQQQSRSTRSSLNLRYAPEFAKFINMGYRYTRDSINQ
VDISGQWPVRPGWFALGRYNYSFLDGRLLEGVAGLEYNGGCWVLRLVAQR
LQVATQLASTSFFVQLELNDLAQIGSDPFDMLKRTISGYTPTNTRTDQAF
PTSLQRKLPFEQVY*
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mRNA from alignment at P-wetherbeei_contig15468:812..1606-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15468.2.1 ID=mRNA_P-wetherbeei_contig15468.2.1|Name=mRNA_P-wetherbeei_contig15468.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=795bp|location=Sequence derived from alignment at P-wetherbeei_contig15468:812..1606- (Phaeothamnion wetherbeei SAG_119_79)
TACTACCTGCGTGCCGGATACCACAACCAGGACAACGTGCCGGTGTTCGA CACCGGCCTCGCGGACTTCAACTTCTCGCAGATGTTCAACGAGAACCGGT TCGCGGGCGGCGACCGCTTCGGCGACGCGAACCAGCTGACCCTGGCCGTC ACCTCCCGCCTGCTGTTCCCGAGCGGGCAGGAATTCCTTCGCGGCACGAT CGGCCAGCGCTACTCGTTCAGCGAGCAGCGGGTCGGCATCACGCCGACCA CGCCCCCGACGACCGGCCGGTCCGACCTGCTCGCGTCCGTCGGAGCGCGC CTCGCGCAGTACTGGAACCTGGACGCGGCCACGCAGTACAACCAGCAGCA GAGCCGCAGCACCCGCTCGAGCCTGAACCTGCGCTACGCCCCGGAGTTCG CGAAGTTCATCAACATGGGCTACCGCTATACGCGGGACTCGATCAACCAG GTGGACATCTCGGGCCAGTGGCCGGTCCGGCCCGGCTGGTTCGCCCTCGG GCGCTACAACTATTCCTTCCTCGACGGCAGGCTCCTCGAGGGCGTCGCGG GCCTGGAATACAATGGCGGCTGCTGGGTGCTTCGCTTGGTCGCGCAGCGG CTGCAGGTGGCCACGCAATTGGCGTCGACCTCCTTTTTCGTCCAGCTCGA GTTGAACGATCTCGCGCAGATCGGGTCCGACCCGTTCGATATGCTGAAAC GCACGATTTCCGGCTATACGCCCACCAATACGCGCACCGACCAGGCTTTC CCGACGAGCCTGCAGCGCAAACTCCCCTTCGAGCAGGTGTACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15468:812..1606-

>mRNA_P-wetherbeei_contig15468.2.1 ID=mRNA_P-wetherbeei_contig15468.2.1|Name=mRNA_P-wetherbeei_contig15468.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=795bp|location=Sequence derived from alignment at P-wetherbeei_contig15468:812..1606- (Phaeothamnion wetherbeei SAG_119_79)
TACTACCTGCGTGCCGGATACCACAACCAGGACAACGTGCCGGTGTTCGA
CACCGGCCTCGCGGACTTCAACTTCTCGCAGATGTTCAACGAGAACCGGT
TCGCGGGCGGCGACCGCTTCGGCGACGCGAACCAGCTGACCCTGGCCGTC
ACCTCCCGCCTGCTGTTCCCGAGCGGGCAGGAATTCCTTCGCGGCACGAT
CGGCCAGCGCTACTCGTTCAGCGAGCAGCGGGTCGGCATCACGCCGACCA
CGCCCCCGACGACCGGCCGGTCCGACCTGCTCGCGTCCGTCGGAGCGCGC
CTCGCGCAGTACTGGAACCTGGACGCGGCCACGCAGTACAACCAGCAGCA
GAGCCGCAGCACCCGCTCGAGCCTGAACCTGCGCTACGCCCCGGAGTTCG
CGAAGTTCATCAACATGGGCTACCGCTATACGCGGGACTCGATCAACCAG
GTGGACATCTCGGGCCAGTGGCCGGTCCGGCCCGGCTGGTTCGCCCTCGG
GCGCTACAACTATTCCTTCCTCGACGGCAGGCTCCTCGAGGGCGTCGCGG
GCCTGGAATACAATGGCGGCTGCTGGGTGCTTCGCTTGGTCGCGCAGCGG
CTGCAGGTGGCCACGCAATTGGCGTCGACCTCCTTTTTCGTCCAGCTCGA
GTTGAACGATCTCGCGCAGATCGGGTCCGACCCGTTCGATATGCTGAAAC
GCACGATTTCCGGCTATACGCCCACCAATACGCGCACCGACCAGGCTTTC
CCGACGAGCCTGCAGCGCAAACTCCCCTTCGAGCAGGTGTACTGA
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