mRNA_P-wetherbeei_contig15464.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15464.3.1
Unique NamemRNA_P-wetherbeei_contig15464.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15464.3.1 vs. uniprot
Match: A0A351T1Q8_9PROT (Rod shape-determining protein MreD n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A351T1Q8_9PROT)

HSP 1 Score: 58.2 bits (139), Expect = 2.930e-9
Identity = 28/46 (60.87%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    1 LIPASTAILFVLAGIVPAGVPGFSTVTPLLSVAAIFFWVVVRPSLM 138
            L+P +T+I FVL G VP G+PGF+TV PL S+ A+FFW VVRP+L+
Sbjct:    8 LVPTATSIFFVLLGAVPLGLPGFATVGPLYSLCAVFFWTVVRPTLL 53
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15464.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A351T1Q8_9PROT2.930e-960.87Rod shape-determining protein MreD n=2 Tax=Alphapr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15464contigP-wetherbeei_contig15464:1470..1607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size138
Hectar predicted targeting categorysignal peptide
Exons1
Cds size138
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186057.0405548-CDS-P-wetherbeei_contig15464:1469..16071683186057.0405548-CDS-P-wetherbeei_contig15464:1469..1607Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15464 1470..1607 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15464.3.1prot_P-wetherbeei_contig15464.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15464 1470..1607 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15464.3.1

>prot_P-wetherbeei_contig15464.3.1 ID=prot_P-wetherbeei_contig15464.3.1|Name=mRNA_P-wetherbeei_contig15464.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=46bp
LIPASTAILFVLAGIVPAGVPGFSTVTPLLSVAAIFFWVVVRPSLM
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mRNA from alignment at P-wetherbeei_contig15464:1470..1607+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15464.3.1 ID=mRNA_P-wetherbeei_contig15464.3.1|Name=mRNA_P-wetherbeei_contig15464.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=138bp|location=Sequence derived from alignment at P-wetherbeei_contig15464:1470..1607+ (Phaeothamnion wetherbeei SAG_119_79)
CTGATACCCGCCTCGACTGCGATTTTATTTGTTCTTGCCGGTATCGTTCC
CGCCGGTGTGCCGGGGTTCAGTACTGTCACCCCCCTGTTAAGTGTCGCTG
CTATTTTCTTCTGGGTTGTCGTGCGTCCCAGTCTTATG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15464:1470..1607+

>mRNA_P-wetherbeei_contig15464.3.1 ID=mRNA_P-wetherbeei_contig15464.3.1|Name=mRNA_P-wetherbeei_contig15464.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=138bp|location=Sequence derived from alignment at P-wetherbeei_contig15464:1470..1607+ (Phaeothamnion wetherbeei SAG_119_79)
CTGATACCCGCCTCGACTGCGATTTTATTTGTTCTTGCCGGTATCGTTCC
CGCCGGTGTGCCGGGGTTCAGTACTGTCACCCCCCTGTTAAGTGTCGCTG
CTATTTTCTTCTGGGTTGTCGTGCGTCCCAGTCTTATG
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