mRNA_P-wetherbeei_contig15464.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15464.1.1
Unique NamemRNA_P-wetherbeei_contig15464.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15464.1.1 vs. uniprot
Match: A0A3D3UI16_9PROT (Cell shape-determining protein MreB n=9 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3D3UI16_9PROT)

HSP 1 Score: 241 bits (616), Expect = 2.860e-77
Identity = 119/144 (82.64%), Postives = 134/144 (93.06%), Query Frame = 1
Query:    1 HNLMIGEASAERIKAQIGAACPPINGDGPSVTLRGRHLIDGVPKEISISERQIAESLAEPVSAIVEAVKVALEQTPPELAADIVDKGIVLTGGGGLLKNLDLVLREATGLPVIVAEDPLSCVAKGTGIALEHLKTMRHVLSGIS 432
            HNLMIGEASAERIKA+IGAACPP NGDGP + ++GRHL+DGVPKE+ I++RQ+AESLAEPV AIVE+VKVALEQTPPELAADIVDKGI+LTGGGGLL  LD+VLREATGLPV +AE PLSCVA+GTG ALEHLKTMRHVL+GIS
Sbjct:  203 HNLMIGEASAERIKAEIGAACPPDNGDGPEMVIKGRHLVDGVPKELRINQRQVAESLAEPVGAIVESVKVALEQTPPELAADIVDKGIILTGGGGLLSKLDVVLREATGLPVSIAESPLSCVAEGTGSALEHLKTMRHVLAGIS 346          
BLAST of mRNA_P-wetherbeei_contig15464.1.1 vs. uniprot
Match: A0A2N3E793_9PROT (Rod shape-determining protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-12 TaxID=2013658 RepID=A0A2N3E793_9PROT)

HSP 1 Score: 209 bits (532), Expect = 6.970e-67
Identity = 104/143 (72.73%), Postives = 125/143 (87.41%), Query Frame = 1
Query:    1 HNLMIGEASAERIKAQIGAACPPINGDGPSVTLRGRHLIDGVPKEISISERQIAESLAEPVSAIVEAVKVALEQTPPELAADIVDKGIVLTGGGGLLKNLDLVLREATGLPVIVAEDPLSCVAKGTGIALEHLKTMRHVLSGI 429
            HNL++GEASAERIK ++G+A  P +GDG ++ ++GR L++GVPKEI+I +RQIAESLAEPV AIVEAVKVALE TPPELAADIVDKGIVLTGGG LL NLD VLR+ TGLPV +A+DPLSCVA GTG ALEH++TM+HVLS +
Sbjct:   30 HNLLVGEASAERIKKEVGSAAIPADGDGMTIEIKGRDLMNGVPKEIAIGQRQIAESLAEPVGAIVEAVKVALEATPPELAADIVDKGIVLTGGGALLSNLDQVLRDETGLPVSIADDPLSCVALGTGKALEHIRTMKHVLSSV 172          
BLAST of mRNA_P-wetherbeei_contig15464.1.1 vs. uniprot
Match: A7HW05_PARL1 (Cell shape-determining protein MreB n=11 Tax=Alphaproteobacteria TaxID=28211 RepID=A7HW05_PARL1)

HSP 1 Score: 208 bits (530), Expect = 2.790e-64
Identity = 104/143 (72.73%), Postives = 125/143 (87.41%), Query Frame = 1
Query:    1 HNLMIGEASAERIKAQIGAACPPINGDGPSVTLRGRHLIDGVPKEISISERQIAESLAEPVSAIVEAVKVALEQTPPELAADIVDKGIVLTGGGGLLKNLDLVLREATGLPVIVAEDPLSCVAKGTGIALEHLKTMRHVLSGI 429
            HNL++GEASAERIK ++G+A  P +GDG ++ ++GR L++GVPKEI+I +RQIAESLAEPV AIVEAVKVALE TPPELAADIVDKGIVLTGGG LL NLD VLR+ TGLPV +A+DPLSCVA GTG ALEH++TM+HVLS +
Sbjct:  203 HNLLVGEASAERIKKEVGSAAIPSDGDGMTIEIKGRDLMNGVPKEIAIGQRQIAESLAEPVGAIVEAVKVALEATPPELAADIVDKGIVLTGGGALLANLDQVLRDETGLPVSIADDPLSCVALGTGKALEHIRTMKHVLSSV 345          
BLAST of mRNA_P-wetherbeei_contig15464.1.1 vs. uniprot
Match: A0A3D9HXG1_9PROT (Cell shape-determining protein MreB n=6 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A3D9HXG1_9PROT)

HSP 1 Score: 207 bits (528), Expect = 5.580e-64
Identity = 103/140 (73.57%), Postives = 124/140 (88.57%), Query Frame = 1
Query:    1 HNLMIGEASAERIKAQIGAACPPINGDGPSVTLRGRHLIDGVPKEISISERQIAESLAEPVSAIVEAVKVALEQTPPELAADIVDKGIVLTGGGGLLKNLDLVLREATGLPVIVAEDPLSCVAKGTGIALEHLKTMRHVL 420
            HNL++GE SAERIK +IG+ACPP +GDG  + ++GR L++GVPKE+ I+ERQIAESLAEPV AIVEAVKVALEQTPPELAADIVDKGIVLTGGGG+L+NLD VLR+ATGLPV +A+D LSCVA GTG  LE ++T+R+VL
Sbjct:  203 HNLLVGEGSAERIKKEIGSACPPEDGDGEQMEIKGRDLMNGVPKELKITERQIAESLAEPVGAIVEAVKVALEQTPPELAADIVDKGIVLTGGGGMLRNLDSVLRQATGLPVSIADDALSCVALGTGRCLEEMRTLRNVL 342          
BLAST of mRNA_P-wetherbeei_contig15464.1.1 vs. uniprot
Match: A0A1Y5EA44_9PROT (Cell shape-determining protein MreB n=5 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1Y5EA44_9PROT)

HSP 1 Score: 207 bits (528), Expect = 5.580e-64
Identity = 107/142 (75.35%), Postives = 123/142 (86.62%), Query Frame = 1
Query:    1 HNLMIGEASAERIKAQIGAACPPINGDGPSVTLRGRHLIDGVPKEISISERQIAESLAEPVSAIVEAVKVALEQTPPELAADIVDKGIVLTGGGGLLKNLDLVLREATGLPVIVAEDPLSCVAKGTGIALEHLKTMRHVLSG 426
            HNL+IGE+SAERIK  IG+ACPP +G G ++ ++GR L++GVPKE+ ISERQIAESLAEPV AIVEAVKVALE T PELAADIVDKGIVLTGGGGLL N D VLR ATGLPV +A++PLSCVA GTG ALE +KT+RHVLSG
Sbjct:  203 HNLLIGESSAERIKKTIGSACPPEDGSGETMEVKGRDLMNGVPKELIISERQIAESLAEPVGAIVEAVKVALEHTAPELAADIVDKGIVLTGGGGLLGNFDSVLRNATGLPVSIADEPLSCVAIGTGRALEEIKTLRHVLSG 344          
BLAST of mRNA_P-wetherbeei_contig15464.1.1 vs. uniprot
Match: A0A081B9V4_9HYPH (Cell shape-determining protein MreB n=8 Tax=Bacteria TaxID=2 RepID=A0A081B9V4_9HYPH)

HSP 1 Score: 206 bits (525), Expect = 1.580e-63
Identity = 104/143 (72.73%), Postives = 124/143 (86.71%), Query Frame = 1
Query:    1 HNLMIGEASAERIKAQIGAACPPINGDGPSVTLRGRHLIDGVPKEISISERQIAESLAEPVSAIVEAVKVALEQTPPELAADIVDKGIVLTGGGGLLKNLDLVLREATGLPVIVAEDPLSCVAKGTGIALEHLKTMRHVLSGI 429
            HNL++GE+SAERIK ++G+A  P +G+G ++ ++GR L++GVPKEI IS+RQIAESLAEPV AIVEAVKVALE TPPELAADIVDKGIVLTGGG LL NLD VLRE TGLPV +A+D LSCVA GTG ALEH+KTM+HVLS +
Sbjct:  203 HNLLVGESSAERIKKEVGSAAIPADGEGMAIEIKGRDLMNGVPKEIKISQRQIAESLAEPVGAIVEAVKVALEATPPELAADIVDKGIVLTGGGALLTNLDQVLREETGLPVSIADDALSCVALGTGKALEHIKTMKHVLSSV 345          
BLAST of mRNA_P-wetherbeei_contig15464.1.1 vs. uniprot
Match: A0A7Y8MRD7_9PROT (Cell shape-determining protein MreB n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7Y8MRD7_9PROT)

HSP 1 Score: 206 bits (524), Expect = 2.170e-63
Identity = 103/141 (73.05%), Postives = 126/141 (89.36%), Query Frame = 1
Query:    1 HNLMIGEASAERIKAQIGAACPPINGDGPSVTLRGRHLIDGVPKEISISERQIAESLAEPVSAIVEAVKVALEQTPPELAADIVDKGIVLTGGGGLLKNLDLVLREATGLPVIVAEDPLSCVAKGTGIALEHLKTMRHVLS 423
            HNL+IGEA+AERIK ++G+A PP +G+G ++ ++GR L++GVPKEI+IS+RQIAESL+EPVSAIVEAVKVALE TPPELAADIVDKGIVLTGGG LL NLD V+RE TGLPVI+A++PLSCVA GTG ALEH K+M+ +LS
Sbjct:  203 HNLLIGEATAERIKKEVGSAAPPPDGNGVTIEIKGRDLLNGVPKEITISQRQIAESLSEPVSAIVEAVKVALEATPPELAADIVDKGIVLTGGGSLLANLDQVIREETGLPVIIADEPLSCVALGTGKALEHFKSMKGILS 343          
BLAST of mRNA_P-wetherbeei_contig15464.1.1 vs. uniprot
Match: A0A2D9I5F4_9PROT (Cell shape-determining protein MreB n=8 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2D9I5F4_9PROT)

HSP 1 Score: 204 bits (520), Expect = 9.210e-63
Identity = 101/140 (72.14%), Postives = 123/140 (87.86%), Query Frame = 1
Query:    1 HNLMIGEASAERIKAQIGAACPPINGDGPSVTLRGRHLIDGVPKEISISERQIAESLAEPVSAIVEAVKVALEQTPPELAADIVDKGIVLTGGGGLLKNLDLVLREATGLPVIVAEDPLSCVAKGTGIALEHLKTMRHVL 420
            HNL++GE SAERIK +IG+ACPP  GDG  + ++GR L++GVPKE++ISERQIAESLAEPV AI+EAVKVALEQTPPELAADIVDKGIVLTGGGG+L+NLD VLR ATGLPV +A++ LSCVA GTG  LE ++T+++VL
Sbjct:  203 HNLLVGEGSAERIKKKIGSACPPEEGDGEMMEIKGRDLMNGVPKELNISERQIAESLAEPVGAIIEAVKVALEQTPPELAADIVDKGIVLTGGGGMLRNLDYVLRHATGLPVSIADEALSCVALGTGRCLEEMRTLKNVL 342          
BLAST of mRNA_P-wetherbeei_contig15464.1.1 vs. uniprot
Match: A0A1Y6B5R3_9HYPH (Cell shape-determining protein MreB n=85 Tax=root TaxID=1 RepID=A0A1Y6B5R3_9HYPH)

HSP 1 Score: 204 bits (519), Expect = 1.270e-62
Identity = 104/140 (74.29%), Postives = 122/140 (87.14%), Query Frame = 1
Query:    1 HNLMIGEASAERIKAQIGAACPPINGDGPSVTLRGRHLIDGVPKEISISERQIAESLAEPVSAIVEAVKVALEQTPPELAADIVDKGIVLTGGGGLLKNLDLVLREATGLPVIVAEDPLSCVAKGTGIALEHLKTMRHVL 420
            HNL++GE SAERIK QIG+ACPP +GDG ++ ++GR L++GVPKE+ ISERQIAE+LAEPVSAIVEAVKVALE T PELAADIVDKGIVLTGGG +L NLD VLR ATGLPV +AEDPLSCVA GTG  LE ++T+R+VL
Sbjct:  203 HNLLVGEGSAERIKKQIGSACPPEDGDGATMEIKGRDLMNGVPKELVISERQIAEALAEPVSAIVEAVKVALEHTAPELAADIVDKGIVLTGGGAMLGNLDFVLRAATGLPVSLAEDPLSCVALGTGRCLEEMRTLRNVL 342          
BLAST of mRNA_P-wetherbeei_contig15464.1.1 vs. uniprot
Match: A0A367WNU0_9PROT (Cell shape-determining protein MreB n=28 Tax=Thalassospira TaxID=168934 RepID=A0A367WNU0_9PROT)

HSP 1 Score: 204 bits (519), Expect = 1.270e-62
Identity = 103/140 (73.57%), Postives = 123/140 (87.86%), Query Frame = 1
Query:    1 HNLMIGEASAERIKAQIGAACPPINGDGPSVTLRGRHLIDGVPKEISISERQIAESLAEPVSAIVEAVKVALEQTPPELAADIVDKGIVLTGGGGLLKNLDLVLREATGLPVIVAEDPLSCVAKGTGIALEHLKTMRHVL 420
            HNL++GE++AER+K +IG+AC P +GDG ++ +RGR L++GVPKE+ ISERQIAESLAEPVSAI+EAVKVALEQTPPELAADIVDKGIVLTGGG +L NLD VLR ATGLPV +A+DPLSCVA GTG ALE  K +R+VL
Sbjct:  203 HNLLVGESTAERVKKEIGSACAPDDGDGATMEIRGRDLMNGVPKELLISERQIAESLAEPVSAIIEAVKVALEQTPPELAADIVDKGIVLTGGGAMLGNLDYVLRHATGLPVSIADDPLSCVALGTGRALEEKKMLRNVL 342          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15464.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D3UI16_9PROT2.860e-7782.64Cell shape-determining protein MreB n=9 Tax=Alphap... [more]
A0A2N3E793_9PROT6.970e-6772.73Rod shape-determining protein (Fragment) n=1 Tax=A... [more]
A7HW05_PARL12.790e-6472.73Cell shape-determining protein MreB n=11 Tax=Alpha... [more]
A0A3D9HXG1_9PROT5.580e-6473.57Cell shape-determining protein MreB n=6 Tax=Alphap... [more]
A0A1Y5EA44_9PROT5.580e-6475.35Cell shape-determining protein MreB n=5 Tax=Alphap... [more]
A0A081B9V4_9HYPH1.580e-6372.73Cell shape-determining protein MreB n=8 Tax=Bacter... [more]
A0A7Y8MRD7_9PROT2.170e-6373.05Cell shape-determining protein MreB n=1 Tax=Alphap... [more]
A0A2D9I5F4_9PROT9.210e-6372.14Cell shape-determining protein MreB n=8 Tax=Alphap... [more]
A0A1Y6B5R3_9HYPH1.270e-6274.29Cell shape-determining protein MreB n=85 Tax=root ... [more]
A0A367WNU0_9PROT1.270e-6273.57Cell shape-determining protein MreB n=28 Tax=Thala... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15464contigP-wetherbeei_contig15464:1..435 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog402881.Plav_2479
Preferred namemreB
PFAMsMreB_Mbl
Model size435
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K03569
KEGG TC1.A.33.1,9.B.157.1
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.92e-62
EggNOG OGsCOG1077@1|root,COG1077@2|Bacteria,1MUMW@1224|Proteobacteria,2TTQ2@28211|Alphaproteobacteria
DescriptionRod shape-determining protein (MreB)
Cds size426
COG categoryD
BRITEko00000,ko02048,ko03036,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186056.9517975-UTR-P-wetherbeei_contig15464:0..91683186056.9517975-UTR-P-wetherbeei_contig15464:0..9Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15464 1..9 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186056.965514-CDS-P-wetherbeei_contig15464:9..4351683186056.965514-CDS-P-wetherbeei_contig15464:9..435Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15464 10..435 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15464.1.1prot_P-wetherbeei_contig15464.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15464 10..435 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15464.1.1

>prot_P-wetherbeei_contig15464.1.1 ID=prot_P-wetherbeei_contig15464.1.1|Name=mRNA_P-wetherbeei_contig15464.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=142bp
MIGEASAERIKAQIGAACPPINGDGPSVTLRGRHLIDGVPKEISISERQI
AESLAEPVSAIVEAVKVALEQTPPELAADIVDKGIVLTGGGGLLKNLDLV
LREATGLPVIVAEDPLSCVAKGTGIALEHLKTMRHVLSGIS*
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mRNA from alignment at P-wetherbeei_contig15464:1..435+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15464.1.1 ID=mRNA_P-wetherbeei_contig15464.1.1|Name=mRNA_P-wetherbeei_contig15464.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=435bp|location=Sequence derived from alignment at P-wetherbeei_contig15464:1..435+ (Phaeothamnion wetherbeei SAG_119_79)
CATAATCTGATGATCGGAGAAGCCAGTGCCGAACGCATCAAGGCGCAGAT TGGCGCAGCCTGTCCACCGATTAACGGGGACGGCCCCTCTGTGACGCTTC GCGGCAGGCATCTGATTGATGGTGTTCCCAAAGAAATCAGCATCTCGGAA CGCCAGATTGCCGAGAGCCTGGCTGAGCCTGTGAGCGCAATTGTTGAAGC GGTGAAGGTCGCCCTTGAACAAACCCCTCCTGAACTGGCGGCCGATATTG TTGACAAGGGTATCGTATTGACAGGCGGCGGCGGGCTTTTGAAAAACCTT GATCTGGTGCTGCGCGAGGCGACCGGTTTGCCGGTTATTGTAGCCGAAGA TCCTTTGTCCTGTGTAGCAAAAGGCACCGGTATCGCACTGGAGCATCTGA AAACCATGCGTCATGTGCTTTCGGGCATAAGTTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15464:1..435+

>mRNA_P-wetherbeei_contig15464.1.1 ID=mRNA_P-wetherbeei_contig15464.1.1|Name=mRNA_P-wetherbeei_contig15464.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig15464:1..435+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATCGGAGAAGCCAGTGCCGAACGCATCAAGGCGCAGATTGGCGCAGC
CTGTCCACCGATTAACGGGGACGGCCCCTCTGTGACGCTTCGCGGCAGGC
ATCTGATTGATGGTGTTCCCAAAGAAATCAGCATCTCGGAACGCCAGATT
GCCGAGAGCCTGGCTGAGCCTGTGAGCGCAATTGTTGAAGCGGTGAAGGT
CGCCCTTGAACAAACCCCTCCTGAACTGGCGGCCGATATTGTTGACAAGG
GTATCGTATTGACAGGCGGCGGCGGGCTTTTGAAAAACCTTGATCTGGTG
CTGCGCGAGGCGACCGGTTTGCCGGTTATTGTAGCCGAAGATCCTTTGTC
CTGTGTAGCAAAAGGCACCGGTATCGCACTGGAGCATCTGAAAACCATGC
GTCATGTGCTTTCGGGCATAAGTTAA
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