prot_P-wetherbeei_contig15460.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-wetherbeei_contig15460.1.1
Unique Name	prot_P-wetherbeei_contig15460.1.1
Type	polypeptide
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length	206

Homology

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BLAST of mRNA_P-wetherbeei_contig15460.1.1 vs. uniprot
Match: A0A2D4BU71_PYTIN (Splicing factor U2AF subunit n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BU71_PYTIN)

HSP 1 Score: 226 bits (575), Expect = 2.030e-68
Identity = 110/194 (56.70%), Postives = 144/194 (74.23%), Query Frame = 0

Query:    7 SNFDVRPAGLDDATAQQLVAQAFAQQTAPSTAGGMPAAPGYAPPQPLLQVSSVGLTMQQTRHARRLYVGSVPRVTDAELRDFFNNVIDRALGEAVEGGAVVNVYLNQERAFAFVEIKTVELTTACLQLDGLVFQDQQLKIRRPSDYNPALMPTKLEPTPRMDLSVLGIVSTTVPDGPNKVFVGGLPYHLTDDQV 200
            SNFDVRP G+ D  A    AQA  QQ   + +G  P  P    P P++       + QQTRHARRLYVG +  V++AE+ +FFN+VIDRALGE  EGGAVV+VY+N+ER FAFVE+K++ELTTAC+ LDG+ F+ Q +K+RRP+DYNPA +P  L P P+++L+ LG+VSTTV D P+K+F+GG+PYHLTDDQV
Sbjct:  118 SNFDVRPPGVTDENAAAYAAQAILQQNLAALSG--PVGPASFGPPPMMGAGPYTASHQQTRHARRLYVGGIGEVSEAEIVEFFNDVIDRALGERQEGGAVVSVYINRERHFAFVELKSIELTTACMNLDGISFRGQPVKVRRPNDYNPATVPKDLGPIPQLNLAALGVVSTTVQDSPSKIFIGGIPYHLTDDQV 309

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BLAST of mRNA_P-wetherbeei_contig15460.1.1 vs. uniprot
Match: A0A835ZGN1_9STRA (Splicing factor U2AF subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGN1_9STRA)

HSP 1 Score: 222 bits (565), Expect = 5.310e-68
Identity = 117/203 (57.64%), Postives = 146/203 (71.92%), Query Frame = 0

Query:    3 RERGSNFDVRPAGLDDATAQQLVAQAFAQQTAPSTAGG----MPAAPGYAPPQPLLQVSSVGLTMQQTRHARRLYVGSVPRVTDAELRDFFNNVIDRALGEAVEGGAVVNVYLNQERAFAFVEIKTVELTTACLQLDGLVFQDQQLKIRRPSDYNPALMPTKL-EPTPRMDLSVLGIVSTTVPDGPNKVFVGGLPYHLTDDQV 200
            +ERGSNFDV P G+D+ATA Q+ AQAF QQT P+ A      +P   G AP            TMQQTRHARRLYVG++PRV + E++ FFN V+ RALG   E   VV+VYLNQ+R FAFVE+++V LTTA +QLDGL++ D  LKIRRPSDYNP+ +P++       ++LS LGIVS TVPD PNKVF+GGLPYHLT++QV
Sbjct:    1 KERGSNFDVLPEGMDEATANQIAAQAFLQQTLPAAAAAAAVPLPMGGGAAP------------TMQQTRHARRLYVGNIPRVPEQEVQRFFNEVLTRALGGRQESDPVVSVYLNQDRGFAFVELRSVALTTAAIQLDGLMYGDISLKIRRPSDYNPSAVPSEFTNEVVHLNLSALGIVSNTVPDSPNKVFIGGLPYHLTEEQV 191

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BLAST of mRNA_P-wetherbeei_contig15460.1.1 vs. uniprot
Match: A0A5D6XX73_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XX73_9STRA)

HSP 1 Score: 223 bits (567), Expect = 5.050e-66
Identity = 117/216 (54.17%), Postives = 150/216 (69.44%), Query Frame = 0

Query:    2 RRERGSNFDVRPAGLDDATAQQLVAQAFAQQTAPSTAGGM-------PAAPGYAPPQP----------LLQVSSVGLTMQQTRHARRLYVGSVPRVTDAELRDFFNNVIDRALGEAVEGGAVVNVYLNQERAFAFVEIKTVELTTACLQLDGLVFQDQQLKIRRPSDYNPALMPTKLEPTPRMDLSVLGIVSTTVPDGPNKVFVGGLPYHLTDDQV 200
            RR + S FDVRP G+ +  A    AQA  QQ   + AGG        PAA   AP  P          LL   S G   QQTRHARRLYVG +  V + E+ +FFN+VIDRALGE +EGGAVV+VY+N+ER FAFVE++++ELTTAC+ LDG+ F+ Q LK+RRP+DYNPA +PT+L P P+++L+ LGIVSTTV DGP K+F+GGLPYHL ++Q+
Sbjct:  192 RRRKKSYFDVRPPGVTEENAAAYAAQAILQQNMATHAGGAGAVAFNPPAAVAVAPSAPAHSHSALVPGLLPPQSFGGNSQQTRHARRLYVGGLGEVGEQEITEFFNDVIDRALGERMEGGAVVSVYINRERHFAFVELRSIELTTACMNLDGVAFRGQPLKVRRPNDYNPATVPTELGPIPQLNLAALGIVSTTVCDGPGKIFIGGLPYHLNEEQI 407

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BLAST of mRNA_P-wetherbeei_contig15460.1.1 vs. uniprot
Match: A0A8K1C271_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C271_PYTOL)

HSP 1 Score: 216 bits (549), Expect = 7.340e-64
Identity = 109/194 (56.19%), Postives = 140/194 (72.16%), Query Frame = 0

Query:    7 SNFDVRPAGLDDATAQQLVAQAFAQQTAPSTAGGMPAAPGYAPPQPLLQVSSVGLTMQQTRHARRLYVGSVPRVTDAELRDFFNNVIDRALGEAVEGGAVVNVYLNQERAFAFVEIKTVELTTACLQLDGLVFQDQQLKIRRPSDYNPALMPTKLEPTPRMDLSVLGIVSTTVPDGPNKVFVGGLPYHLTDDQV 200
            SNFDVRP G+ +  A    AQA  QQ   + +G +  A    PP       +   + QQTRHARR+YVG +  V + E+ +FFN+VIDRALGE  EGGAVV+VY+N+ER FAFVE+KT+ELTTAC+ LDG+ F+ Q LKIRRP+DYNP+ +P  L P P+++L+ LGIVSTTV D P+K+FVGG+PYHL DDQV
Sbjct:  159 SNFDVRPPGVTEENAAAYAAQAILQQNMAALSGAVGPASFGPPP----ANGTYSASHQQTRHARRIYVGGIGEVAEQEITEFFNDVIDRALGERQEGGAVVSVYINRERHFAFVELKTIELTTACMNLDGVSFRGQPLKIRRPNDYNPSNVPKDLGPIPQLNLAALGIVSTTVQDSPHKIFVGGIPYHLNDDQV 348

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BLAST of mRNA_P-wetherbeei_contig15460.1.1 vs. uniprot
Match: F0WWX4_9STRA (Splicing factor U2AF subunit n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WWX4_9STRA)

HSP 1 Score: 215 bits (547), Expect = 1.280e-63
Identity = 107/196 (54.59%), Postives = 138/196 (70.41%), Query Frame = 0

Query:    5 RGSNFDVRPAGLDDATAQQLVAQAFAQQTAPSTAGGMPAAPGYAPPQPLLQVSSVGLTMQQTRHARRLYVGSVPRVTDAELRDFFNNVIDRALGEAVEGGAVVNVYLNQERAFAFVEIKTVELTTACLQLDGLVFQDQQLKIRRPSDYNPALMPTKLEPTPRMDLSVLGIVSTTVPDGPNKVFVGGLPYHLTDDQV 200
            R SNFDVRP G+ +  A    AQA  Q    + +G +  A    PP      +      QQTRHARR+YVG +  V + E+  FFN+VIDRALGE  EGGAVV+VY+N+ER FAFVE+K++ELTTAC+ LDG+ F+ Q LK+RRP+DYNP L+P  L P P ++L+ LGIVSTTV DGP KVF+GG+PYHLT++Q+
Sbjct:  150 RKSNFDVRPPGVTEENAAAYAAQAILQHNMAALSGAVGPASFGPPPSNSTNQNFNTPMAQQTRHARRIYVGGIGEVNETEISAFFNDVIDRALGERQEGGAVVSVYINRERHFAFVELKSIELTTACMNLDGIAFRGQPLKVRRPNDYNPGLVPKDLGPIPALNLAALGIVSTTVQDGPGKVFIGGIPYHLTEEQI 345

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BLAST of mRNA_P-wetherbeei_contig15460.1.1 vs. uniprot
Match: A0A0P1B7G2_PLAHL (Splicing factor U2AF subunit n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B7G2_PLAHL)

HSP 1 Score: 215 bits (547), Expect = 1.770e-63
Identity = 113/217 (52.07%), Postives = 149/217 (68.66%), Query Frame = 0

Query:    2 RRERGSNFDVRPAGLDDATAQQLVAQAFAQQTAPSTAGGMPAAPGYAPPQPLLQ----------------VSSVGLT--MQQTRHARRLYVGSVPRVTDAELRDFFNNVIDRALGEAVEGGAVVNVYLNQERAFAFVEIKTVELTTACLQLDGLVFQDQQLKIRRPSDYNPALMPTKLEPTPRMDLSVLGIVSTTVPDGPNKVFVGGLPYHLTDDQV 200
            RR + SNFDVRP G+ +  A    AQA  QQ   + +G +  A  + PPQ ++                  ++ GL    QQTRHARRLYVG +  +++AE+  FFN+VIDRALGE  EGG+VV+VY+N+ER FAFVE++T+ELTTAC+ LDG+ +  Q LKIRRP+DYNP  +PT L P P+++L+ LGIVSTTV DGP K+FVGGLPYHL ++QV
Sbjct:  147 RRRKKSNFDVRPPGVTEENAAAYAAQAILQQNMAALSGSVGPA-SFGPPQNVMTSTGNSSAQSSYAHASVATAYGLPGMSQQTRHARRLYVGGIGEISEAEITVFFNDVIDRALGEKQEGGSVVSVYINRERHFAFVELRTIELTTACMNLDGVSYNGQPLKIRRPNDYNPGTVPTDLGPIPQLNLAALGIVSTTVSDGPGKIFVGGLPYHLNEEQV 362

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BLAST of mRNA_P-wetherbeei_contig15460.1.1 vs. uniprot
Match: W2PYB1_PHYPN (Splicing factor U2AF subunit n=7 Tax=Phytophthora TaxID=4783 RepID=W2PYB1_PHYPN)

HSP 1 Score: 214 bits (544), Expect = 4.620e-63
Identity = 111/216 (51.39%), Postives = 145/216 (67.13%), Query Frame = 0

Query:    2 RRERGSNFDVRPAGLDDATAQQLVAQAFAQQTAPSTAGGM----------PAAPGYAPPQPLLQVSSVGL-------TMQQTRHARRLYVGSVPRVTDAELRDFFNNVIDRALGEAVEGGAVVNVYLNQERAFAFVEIKTVELTTACLQLDGLVFQDQQLKIRRPSDYNPALMPTKLEPTPRMDLSVLGIVSTTVPDGPNKVFVGGLPYHLTDDQV 200
            RR + SNFDVRP G+ +  A    AQA  QQ   + +G +          P   G  P  P+   S  G          QQTRHARRLYVG +  +++AE+  FFN+VIDRALGE  EGG+VV+VY+N+ER FAFVE++++ELTTAC+ LDG+ +  Q LKIRRP+DYNPA +P  L P P+++L+ LGIVSTTV DGP K+F+GGLPYHL ++QV
Sbjct:  144 RRRKKSNFDVRPPGVTEENAAAYAAQAILQQNMAALSGSVGPASFGAPPNPTPTGNVPAAPMYSHSHAGPGYGFSSGMSQQTRHARRLYVGGIGEISEAEITAFFNDVIDRALGEKQEGGSVVSVYINRERHFAFVELRSIELTTACMNLDGVSYNGQPLKIRRPNDYNPATVPKDLGPIPQLNLAALGIVSTTVSDGPGKIFIGGLPYHLNEEQV 359

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BLAST of mRNA_P-wetherbeei_contig15460.1.1 vs. uniprot
Match: A0A0W8DGC9_PHYNI (Splicing factor U2AF subunit n=2 Tax=Peronosporaceae TaxID=4777 RepID=A0A0W8DGC9_PHYNI)

HSP 1 Score: 211 bits (537), Expect = 6.860e-63
Identity = 109/211 (51.66%), Postives = 142/211 (67.30%), Query Frame = 0

Query:    7 SNFDVRPAGLDDATAQQLVAQAFAQQTAPSTAGGM----------PAAPGYAPPQPLLQVSSVGL-------TMQQTRHARRLYVGSVPRVTDAELRDFFNNVIDRALGEAVEGGAVVNVYLNQERAFAFVEIKTVELTTACLQLDGLVFQDQQLKIRRPSDYNPALMPTKLEPTPRMDLSVLGIVSTTVPDGPNKVFVGGLPYHLTDDQV 200
            SNFDVRP G+ +  A    AQA  QQ   + +G +          P   G  P  P+   S  G          QQTRHARRLYVG +  +++AE+  FFN+VIDRALGE  EGG+VV+VY+N+ER FAFVE++++ELTTAC+ LDG+ +  Q LKIRRP+DYNPA +P  L P P+++L+ LGIVSTTV DGP K+F+GGLPYHL ++QV
Sbjct:   57 SNFDVRPPGVTEENAAAYAAQAILQQNMAALSGSVGPASFGAPPNPTPTGNVPAAPMYSHSHAGPGYGFSSGMSQQTRHARRLYVGGIGEISEAEITAFFNDVIDRALGEKQEGGSVVSVYINRERHFAFVELRSIELTTACMNLDGVSYNGQPLKIRRPNDYNPATVPKDLGPIPQLNLAALGIVSTTVSDGPGKIFIGGLPYHLNEEQV 267

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BLAST of mRNA_P-wetherbeei_contig15460.1.1 vs. uniprot
Match: K3WB93_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WB93_GLOUD)

HSP 1 Score: 213 bits (543), Expect = 1.280e-62
Identity = 112/205 (54.63%), Postives = 142/205 (69.27%), Query Frame = 0

Query:    7 SNFDVRPAGLDDATAQQLVAQAFAQQTAPSTAGGM------PAAPGYAPPQPLLQVSSV-----GLTMQQTRHARRLYVGSVPRVTDAELRDFFNNVIDRALGEAVEGGAVVNVYLNQERAFAFVEIKTVELTTACLQLDGLVFQDQQLKIRRPSDYNPALMPTKLEPTPRMDLSVLGIVSTTVPDGPNKVFVGGLPYHLTDDQV 200
            S FDVRP G+ +  A    AQA  QQ   + +G +      P  P  APP   +    V     G   QQTRHARR+YVG +  V +AE+ +FFN+VIDRALGE  EGGAVV+VY+N+ER FAFVE++++ELTTAC+ LDG+ F+ Q LKIRRP+DYNP+ +P  L P P ++L+ LGIVSTTV DGP KVF+GGLPYHL D+QV
Sbjct:  188 SYFDVRPPGVTEENAAAYAAQAILQQNMAALSGAVGPASFGPPPPPIAPPAHAIVPGVVASHTFGGNSQQTRHARRIYVGGIGDVNEAEISEFFNDVIDRALGERQEGGAVVSVYINRERHFAFVELRSIELTTACMNLDGVSFRGQPLKIRRPNDYNPSTVPKDLGPIPTLNLAALGIVSTTVSDGPGKVFIGGLPYHLNDEQV 392

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BLAST of mRNA_P-wetherbeei_contig15460.1.1 vs. uniprot
Match: H3GIY2_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GIY2_PHYRM)

HSP 1 Score: 215 bits (547), Expect = 2.370e-62
Identity = 113/219 (51.60%), Postives = 145/219 (66.21%), Query Frame = 0

Query:    2 RRERGSNFDVRPAGLDDATAQQLVAQAFAQQTAPSTAGGMPAAP-------------GYAPPQPLLQVSSVGLT-------MQQTRHARRLYVGSVPRVTDAELRDFFNNVIDRALGEAVEGGAVVNVYLNQERAFAFVEIKTVELTTACLQLDGLVFQDQQLKIRRPSDYNPALMPTKLEPTPRMDLSVLGIVSTTVPDGPNKVFVGGLPYHLTDDQV 200
            RR + SNFDVRP G+ +  A    AQA  QQ   + +G +  A              G APP P+   S    T        QQTRHARRLYVG +  + + E+  FFN+VIDRALGE  EGG+VV+VY+N+ER FAFVE++T+ELTTAC+ LDG+ +  Q LKIRRP+DYNPA +P  L P P+++L+ LGIVSTTV DGP K+F+GGLPYHL ++QV
Sbjct:  295 RRRKKSNFDVRPPGVTEENAAAYAAQAILQQNMAALSGSVGPASFGPPQTSSPSMSTGNAPPAPMYNHSHQASTGYGFPGQSQQTRHARRLYVGGIGEIAEPEITAFFNDVIDRALGEKQEGGSVVSVYINRERHFAFVELRTIELTTACMNLDGVAYNGQPLKIRRPNDYNPATVPKDLGPIPQLNLAALGIVSTTVSDGPGKIFIGGLPYHLNEEQV 513

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig15460.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig15460.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2D4BU71_PYTIN	2.030e-68	56.70	Splicing factor U2AF subunit n=1 Tax=Pythium insid...	[more]
A0A835ZGN1_9STRA	5.310e-68	57.64	Splicing factor U2AF subunit n=1 Tax=Tribonema min...	[more]
A0A5D6XX73_9STRA	5.050e-66	54.17	Uncharacterized protein n=1 Tax=Pythium brassicum ...	[more]
A0A8K1C271_PYTOL	7.340e-64	56.19	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
F0WWX4_9STRA	1.280e-63	54.59	Splicing factor U2AF subunit n=1 Tax=Albugo laibac...	[more]
A0A0P1B7G2_PLAHL	1.770e-63	52.07	Splicing factor U2AF subunit n=1 Tax=Plasmopara ha...	[more]
W2PYB1_PHYPN	4.620e-63	51.39	Splicing factor U2AF subunit n=7 Tax=Phytophthora ...	[more]
A0A0W8DGC9_PHYNI	6.860e-63	51.66	Splicing factor U2AF subunit n=2 Tax=Peronosporace...	[more]
K3WB93_GLOUD	1.280e-62	54.63	Uncharacterized protein n=1 Tax=Globisporangium ul...	[more]
H3GIY2_PHYRM	2.370e-62	51.60	Uncharacterized protein n=1 Tax=Phytophthora ramor...	[more]

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InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 71..147 e-value: 0.0025 score: 27.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 70..151 score: 12.304504
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 70..154 e-value: 2.3E-21 score: 78.5
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 164..200 e-value: 2.3E-21 score: 78.5
None	No IPR available	PANTHER	PTHR23139	RNA-BINDING PROTEIN	coord: 4..200
None	No IPR available	CDD	cd12230	RRM1_U2AF65	coord: 69..149 e-value: 3.29398E-32 score: 109.938
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 69..200

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig15460	contig	P-wetherbeei_contig15460:3..1116 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig15460.1.1	mRNA_P-wetherbeei_contig15460.1.1	Phaeothamnion wetherbeei SAG_119_79	mRNA	P-wetherbeei_contig15460 3..1116 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-wetherbeei_contig15460.1.1 ID=prot_P-wetherbeei_contig15460.1.1|Name=mRNA_P-wetherbeei_contig15460.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=206bp
RRRERGSNFDVRPAGLDDATAQQLVAQAFAQQTAPSTAGGMPAAPGYAPP
QPLLQVSSVGLTMQQTRHARRLYVGSVPRVTDAELRDFFNNVIDRALGEA
VEGGAVVNVYLNQERAFAFVEIKTVELTTACLQLDGLVFQDQQLKIRRPS
DYNPALMPTKLEPTPRMDLSVLGIVSTTVPDGPNKVFVGGLPYHLTDDQV
GSTGF*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf