mRNA_P-wetherbeei_contig15392.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15392.1.1
Unique NamemRNA_P-wetherbeei_contig15392.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15392.1.1 vs. uniprot
Match: A0A537S627_9PROT (PilZ domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537S627_9PROT)

HSP 1 Score: 58.5 bits (140), Expect = 9.860e-9
Identity = 32/78 (41.03%), Postives = 43/78 (55.13%), Query Frame = 1 
Query:   22 ERRQFGRRETLLHAVAWIPGRGTFHCAVTNLSEQGANLSFAEQLALPPVFRIKIEAWGLELTCNFRHQGTQGVGVVFI 255
            ERRQFGRR+T +HA   + GR    C + N+SE+GA L  A    LP  FR+  EA  ++  C    +    VGV F+
Sbjct:    5 ERRQFGRRQTCVHATILLRGRPVVPCVMRNISEEGALLEVAHPEWLPIRFRLIAEALAIDGDCEIVRRTDVAVGVRFM 82
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BLAST of mRNA_P-wetherbeei_contig15392.1.1 vs. uniprot
Match: A0A3S5JDE3_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiaceae bacterium TMED74 TaxID=1986774 RepID=A0A3S5JDE3_9HYPH)

HSP 1 Score: 51.2 bits (121), Expect = 7.130e-6
Identity = 32/79 (40.51%), Postives = 41/79 (51.90%), Query Frame = 1 
Query:   22 ERRQFGRRETLLHAVAWIPGRGTFHCAVTNLSEQGANLSFAEQLALPPV--FRIKIEAWGLELTCNFRHQGTQGVGVVF 252
            +RR FGRR T++HA A+  GR    C V N+S  GA L FA     PP   FR+ I     E  C+ R +    +GV F
Sbjct:    9 DRRDFGRRHTVMHAWAFPKGRDRVPCTVRNISSTGALLEFAS--GSPPFDSFRLAIPVLRQEWWCDVRDRRPNHLGVHF 85
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15392.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A537S627_9PROT9.860e-941.03PilZ domain-containing protein n=1 Tax=Alphaproteo... [more]
A0A3S5JDE3_9HYPH7.130e-640.51Uncharacterized protein n=1 Tax=Hyphomicrobiaceae ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15392contigP-wetherbeei_contig15392:764..1099 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1502851.FG93_05637
PFAMsPilZ
Model size336
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000264
EggNOG OGs2BHHJ@1|root,32BJW@2|Bacteria,1REMD@1224|Proteobacteria,2U7XZ@28211|Alphaproteobacteria,3JYPI@41294|Bradyrhizobiaceae
DescriptionPilZ domain
Cds size336
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186054.3171067-CDS-P-wetherbeei_contig15392:763..10991683186054.3171067-CDS-P-wetherbeei_contig15392:763..1099Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15392 764..1099 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15392.1.1prot_P-wetherbeei_contig15392.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15392 764..1099 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15392.1.1

>prot_P-wetherbeei_contig15392.1.1 ID=prot_P-wetherbeei_contig15392.1.1|Name=mRNA_P-wetherbeei_contig15392.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=112bp
MKKTPQPERRQFGRRETLLHAVAWIPGRGTFHCAVTNLSEQGANLSFAEQ
LALPPVFRIKIEAWGLELTCNFRHQGTQGVGVVFIDDAIAERILTKVEAA
TRCRVAKQQQPQ
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mRNA from alignment at P-wetherbeei_contig15392:764..1099+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15392.1.1 ID=mRNA_P-wetherbeei_contig15392.1.1|Name=mRNA_P-wetherbeei_contig15392.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig15392:764..1099+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGAAAACTCCCCAACCCGAGAGGCGCCAATTCGGCAGGCGCGAAAC
GCTTTTGCACGCAGTTGCCTGGATTCCAGGGCGTGGCACTTTTCACTGCG
CCGTGACCAACCTGTCCGAACAAGGCGCAAACCTTTCGTTTGCCGAGCAA
TTGGCATTGCCGCCAGTTTTCAGGATCAAGATCGAAGCCTGGGGACTGGA
ACTTACGTGTAACTTTCGCCACCAAGGCACGCAGGGCGTCGGCGTTGTCT
TCATCGACGACGCCATTGCGGAGAGAATCTTGACCAAAGTCGAGGCGGCC
ACCCGTTGCCGGGTCGCCAAGCAACAGCAGCCGCAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15392:764..1099+

>mRNA_P-wetherbeei_contig15392.1.1 ID=mRNA_P-wetherbeei_contig15392.1.1|Name=mRNA_P-wetherbeei_contig15392.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig15392:764..1099+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGAAAACTCCCCAACCCGAGAGGCGCCAATTCGGCAGGCGCGAAAC
GCTTTTGCACGCAGTTGCCTGGATTCCAGGGCGTGGCACTTTTCACTGCG
CCGTGACCAACCTGTCCGAACAAGGCGCAAACCTTTCGTTTGCCGAGCAA
TTGGCATTGCCGCCAGTTTTCAGGATCAAGATCGAAGCCTGGGGACTGGA
ACTTACGTGTAACTTTCGCCACCAAGGCACGCAGGGCGTCGGCGTTGTCT
TCATCGACGACGCCATTGCGGAGAGAATCTTGACCAAAGTCGAGGCGGCC
ACCCGTTGCCGGGTCGCCAAGCAACAGCAGCCGCAA
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