mRNA_P-wetherbeei_contig1539.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1539.1.2
Unique NamemRNA_P-wetherbeei_contig1539.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig1539.1.2 vs. uniprot
Match: A0A835ZHC9_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHC9_9STRA)

HSP 1 Score: 317 bits (813), Expect = 9.380e-96
Identity = 152/237 (64.14%), Postives = 190/237 (80.17%), Query Frame = 2 
Query: 2627 LRNQISHPHIVQLIEVFREAHMCYLVMELVRGGELFDRIVARTCYDEVTARGIVRLLLMTVHYLHSHNVVHRDIKPENLLLMRHNDDCQVKIADFGFAEHISVLEECSAVCGTPQYVAPEILQGQRYGATVDVWSMGVVTFVLLGGYPPFYDREKKQLFRKIVRGQYEFHSPFWDHVSQEAKDFIRCMLVVDARSRRTAAQLLEHRWIRGPSAARLLPGPGGERHFRNYDARRRLRA 3337
            + N+ISHP+IVQL EV+RE+++ YLVMEL RGGELF+RIV RTCY E  AR ++RLL++TV YLH  ++VHRD+KPENLLL+   DDC +KIADFGFAEHIS L+ C+A CGTPQYV+PEILQG+ Y ATVD+WS+GV+ FVL+GGYPPFYDREK +LFRKI+RG++EF SPFWDH+S +AKDFI CMLVV+   R  AAQLLEHRW++   +A+          FR Y ++RR RA
Sbjct:   61 IMNEISHPNIVQLAEVYRESNIYYLVMELARGGELFERIVERTCYTEDCARELLRLLIVTVQYLHRSSIVHRDLKPENLLLVSEGDDCFIKIADFGFAEHISELDCCNAACGTPQYVSPEILQGRHYTATVDIWSIGVIAFVLMGGYPPFYDREKTELFRKIIRGEFEFLSPFWDHISDDAKDFICCMLVVNPERRHNAAQLLEHRWVQETLSAQSNVHTH-RLQFRMYRSKRRFRA 296
[Close]
BLAST of mRNA_P-wetherbeei_contig1539.1.2 vs. uniprot
Match: A0A7S3XZF5_HETAK (Phosphorylase kinase n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZF5_HETAK)

HSP 1 Score: 275 bits (702), Expect = 4.770e-79
Identity = 137/256 (53.52%), Postives = 177/256 (69.14%), Query Frame = 2 
Query: 2627 LRNQISHPHIVQLIEVFREAHMCYLVMELVRGGELFDRIVARTCYDEVTARGIVRLLLMTVHYLHSHNVVHRDIKPENLLLMRHNDDCQVKIADFGFAEHISVLEECSAVCGTPQYVAPEILQGQRYGATVDVWSMGVVTFVLLGGYPPFYDREKKQLFRKIVRGQYEFHSPFWDHVSQEAKDFIRCMLVVDARSRRTAAQLLEHRWI-------RGPSAARLLPGPGGERHFRNYDARRRLRAAGFAVIAAHRLQ 3373
            +  ++ H H+++L +VF E     LV+ELV GGELFDRIV +  Y E  AR +V LLL T+ YLH+H++VHRD+KPENLLL    DD  +KIADFGFA HIS + E    CGTP YVAPEIL+G +Y    D+WS GV+T++LLGGYPPFYD ++ QLFRKI RGQY+FH+P+WDHVS+EA+D I  MLVV+ + R++AA+LL H WI        G   A  L        FR ++ARR+LRAA   VIA +R +
Sbjct:   84 IMKELDHEHVIKLADVFNEGAQTILVLELVVGGELFDRIVQKEKYTEKEARDLVALLLRTLDYLHTHDIVHRDLKPENLLLTSREDDANIKIADFGFARHISEVREMEEACGTPGYVAPEILRGLKYSGKADLWSAGVITYILLGGYPPFYDEDQDQLFRKIRRGQYQFHAPYWDHVSEEARDLISQMLVVNHKQRQSAAELLRHPWIVAADADLAGKDLAPTLT------EFRKFNARRKLRAAMETVIALNRFR 333
[Close]
BLAST of mRNA_P-wetherbeei_contig1539.1.2 vs. uniprot
Match: A0A7S2XV40_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV40_9STRA)

HSP 1 Score: 253 bits (647), Expect = 9.750e-72
Identity = 124/257 (48.25%), Postives = 169/257 (65.76%), Query Frame = 2 
Query: 2612 MANMPLRNQISHPHIVQLIEVFREAHMCYLVMELVRGGELFDRIVARTCYDEVTARGIVRLLLMTVHYLHSHNVVHRDIKPENLLLMRHNDDCQVKIADFGFAEHISVLEECSAVCGTPQYVAPEILQGQRYGATVDVWSMGVVTFVLLGGYPPFYDREKKQLFRKIVRGQYEFHSPFWDHVSQEAKDFIRCMLVVDARSRRTAAQLLEHRWIRGPS---AARLLPGPGGERHFRNYDARRRLRAAGFAVIAAHRLQ 3373
            +  + +   + HP+I++L E F E H  YLV+EL+ GGELFDRIV +T Y+E  AR +V +LL  + + H + +VHRD+KPENLLL    DD  +KIADFGFA  +      +  CGTP YVAPEIL G  YG  VD+WS+GV+T++LLGGYPPF+D ++  LF KI  G + FH  +WD VS+EAKD IR +L VD   R TAA+ ++H W+ G     AAR L      R  R ++ARR+ R+   A++AA+R+Q
Sbjct:   73 IEEVTILKHVDHPNIIKLYEFFEEKHFYYLVIELMEGGELFDRIVQKTYYNEKEARDLVHILLSAIKFCHDNGIVHRDLKPENLLLTSSKDDASIKIADFGFARQVKESNNLTTQCGTPGYVAPEILNGVPYGLAVDMWSIGVITYILLGGYPPFHDEKQSNLFAKIRAGDFVFHPEYWDPVSEEAKDLIRKLLTVDPNKRITAAEAMQHPWVTGADETLAARNLDSQ--LRELRRFNARRKFRSGVKAIVAANRMQ 327
[Close]
BLAST of mRNA_P-wetherbeei_contig1539.1.2 vs. uniprot
Match: A0A4D9CNB5_9STRA (Protein kinase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CNB5_9STRA)

HSP 1 Score: 249 bits (636), Expect = 3.780e-70
Identity = 126/248 (50.81%), Postives = 165/248 (66.53%), Query Frame = 2 
Query: 2639 ISHPHIVQLIEVFREAHMCYLVMELVRGGELFDRIVARTCYDEVTARGIVRLLLMTVHYLHSHNVVHRDIKPENLLLMRHNDDCQVKIADFGFAEHISVLEECSAVCGTPQYVAPEILQGQRYGATVDVWSMGVVTFVLLGGYPPFYDREKKQLFRKIVRGQYEFHSPFWDHVSQEAKDFIRCMLVVDARSRRTAAQLLEHRWIRGPSAARLLPG---PGGERHFRNYDARRRLRAAGFAVIAAHRLQ 3373
            + H H+VQL + +++    YLV+E+  GGELFDRIV +  Y+E  AR +VR+L  T+ Y HS  VVHRD+KPENLLL    DD  +K+ADFGFA+ +      +  CGTP YVAPEIL+G  YG  VDVWS GV+T++LLGGYPPFYD  + ++FRKI RG ++FHSP WDHVS EAKD I+ +LVVD   R  AA  L+H WI   ++  LL      G     + ++A+R+ R A  AVI  HRL+
Sbjct:   81 MKHGHVVQLFDFYKDRQKYYLVLEICLGGELFDRIVEKKSYNEKEARDLVRILFDTLRYCHSTKVVHRDLKPENLLLEDERDDANIKLADFGFAQRMLTPNSLTTQCGTPGYVAPEILKGIPYGEKVDVWSAGVITYILLGGYPPFYDENQGRMFRKIKRGDFKFHSPMWDHVSPEAKDLIKRLLVVDPDKRLDAAGALKHAWIL--TSDHLLQKRDLAGTVEEMKKFNAKRKFRGAAKAVILMHRLK 326
[Close]
BLAST of mRNA_P-wetherbeei_contig1539.1.2 vs. uniprot
Match: A0A662YHU2_9STRA (Protein kinase domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YHU2_9STRA)

HSP 1 Score: 249 bits (637), Expect = 1.020e-69
Identity = 125/250 (50.00%), Postives = 170/250 (68.00%), Query Frame = 2 
Query: 2612 MANMPLRNQISHPHIVQLIEVFREAHMCYLVMELVRGGELFDRIVARTCYDEVTARGIVRLLLMTVHYLHSHNVVHRDIKPENLLLMRHNDDCQVKIADFGFAEHISVLEE-CSAVCGTPQYVAPEILQGQRYGATVDVWSMGVVTFVLLGGYPPFYDREKKQLFRKIVRGQYEFHSPFWDHVSQEAKDFIRCMLVVDARSRRTAAQLLEHRWIRGPSAARLLPGPGGERHFRNYDARRRLRAAGFAVIA 3358
            M  + +  Q+ HPHI+ L E F E    YLV E V GGELFDRIV +T Y E  AR +V++L+  + Y H  NVVHRD+KPENLLLM  +DD  +K+ADFGFA+ ++  +      CGTP YVAPEIL+G  YG  VD+WS+GV+T++LL GYPPF+D  +  LFRKI +G+Y + SP+WD+VS +AK+FI  MLVVD ++R TA++LL+H+WI G   A  +P        R + AR++ +AA  +V A
Sbjct:  139 MFEVAILQQMKHPHIMTLQEFFVEPEYYYLVTEFVGGGELFDRIVEKTFYTEKEARDLVKILIDAIKYCHDQNVVHRDLKPENLLLMSADDDASIKLADFGFAKTVTKDDSGLVTTCGTPGYVAPEILEGASYGKPVDIWSIGVITYILLAGYPPFHDDSQPILFRKIRKGKYYYDSPYWDNVSDDAKEFISKMLVVDPKNRATASELLQHKWITGSDVA-TVPLTSALTELRRFHARKKFKAAVHSVQA 387
[Close]
BLAST of mRNA_P-wetherbeei_contig1539.1.2 vs. uniprot
Match: G4ZAF6_PHYSP (Protein kinase domain-containing protein n=7 Tax=Phytophthora TaxID=4783 RepID=G4ZAF6_PHYSP)

HSP 1 Score: 246 bits (629), Expect = 6.730e-69
Identity = 123/242 (50.83%), Postives = 166/242 (68.60%), Query Frame = 2 
Query: 2636 QISHPHIVQLIEVFREAHMCYLVMELVRGGELFDRIVARTCYDEVTARGIVRLLLMTVHYLHSHNVVHRDIKPENLLLMRHNDDCQVKIADFGFAEHISVLEE-CSAVCGTPQYVAPEILQGQRYGATVDVWSMGVVTFVLLGGYPPFYDREKKQLFRKIVRGQYEFHSPFWDHVSQEAKDFIRCMLVVDARSRRTAAQLLEHRWIRGPSAARLLPGPGGERHFRNYDARRRLRAAGFAVIA 3358
            Q+ HPHI+ L E F E    YLV E V GGELFDRIV +T Y E  AR +V++L+  + Y H  NVVHRD+KPENLLLM  +DD  +K+ADFGFA+ ++  +      CGTP YVAPEIL+G  YG  VD+WS+GV+T++LL GYPPF+D  +  LF+KI +G+Y + SP+WD+VS +AK+FI  MLVVD ++R TA +LL+H+WI G   A  +P        R + AR++ +AA  +V A
Sbjct:  128 QMKHPHIMTLEEFFVEPEYYYLVTEFVGGGELFDRIVEKTFYTEKEARDLVKILIDAIKYCHDQNVVHRDLKPENLLLMSADDDASIKLADFGFAKTVTKDDSGLVTTCGTPGYVAPEILEGASYGKPVDIWSIGVITYILLAGYPPFHDDSQPLLFKKIRKGKYYYDSPYWDNVSTDAKEFISKMLVVDPKNRATAGELLQHKWITGTDVA-TVPLTSALTELRRFHARKKFKAAVHSVQA 368
[Close]
BLAST of mRNA_P-wetherbeei_contig1539.1.2 vs. uniprot
Match: A0A6A4Z0M1_9STRA (Protein kinase domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z0M1_9STRA)

HSP 1 Score: 247 bits (630), Expect = 7.130e-69
Identity = 121/235 (51.49%), Postives = 162/235 (68.94%), Query Frame = 2 
Query: 2636 QISHPHIVQLIEVFREAHMCYLVMELVRGGELFDRIVARTCYDEVTARGIVRLLLMTVHYLHSHNVVHRDIKPENLLLMRHNDDCQVKIADFGFAEHISVLEECSAVCGTPQYVAPEILQGQRYGATVDVWSMGVVTFVLLGGYPPFYDREKKQLFRKIVRGQYEFHSPFWDHVSQEAKDFIRCMLVVDARSRRTAAQLLEHRWIRGPSAARLLPGPGGERHFRNYDARRRLRAA 3340
            ++ HP+I+ L EV+ EA   YLV E ++GGELFDRIV +T Y E  AR +V++LL  + Y H HNVVHRD+KPENLLL   +DD  +KI DFGFA+   +    +  CGTP YVAPEIL+G+ YG +VD+WS+GV+TF+LL GYPPF+D  +K+LF  I  GQY+F +P+WD VS +AKDFI  ML+V+   R TA QLLEH W+ G   +  +P        + Y+ RR+ +AA
Sbjct:  105 KMEHPNIMTLFEVYTEAQYYYLVTEFMQGGELFDRIVEKTFYTEKEARDLVQVLLGAIKYCHDHNVVHRDLKPENLLLTSKDDDAYIKIGDFGFAKQ-DLKAGLTTACGTPGYVAPEILKGEAYGKSVDIWSIGVITFILLCGYPPFHDENQKRLFTAIKLGQYKFDAPYWDDVSADAKDFISKMLIVNPNDRHTADQLLEHVWVTGDEVS-TVPLTKAMEELKKYNTRRKFKAA 337
[Close]
BLAST of mRNA_P-wetherbeei_contig1539.1.2 vs. uniprot
Match: A0A8K1CDJ7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CDJ7_PYTOL)

HSP 1 Score: 246 bits (627), Expect = 8.180e-69
Identity = 123/248 (49.60%), Postives = 167/248 (67.34%), Query Frame = 2 
Query: 2612 MANMPLRNQISHPHIVQLIEVFREAHMCYLVMELVRGGELFDRIVARTCYDEVTARGIVRLLLMTVHYLHSHNVVHRDIKPENLLLMRHNDDCQVKIADFGFAEHISVLEE-CSAVCGTPQYVAPEILQGQRYGATVDVWSMGVVTFVLLGGYPPFYDREKKQLFRKIVRGQYEFHSPFWDHVSQEAKDFIRCMLVVDARSRRTAAQLLEHRWIRGPSAARLLPGPGGERHFRNYDARRRLRAAGFAV 3352
            +  + +   + HP+I+ L E F E    YLV E V GGELFDRIV +T Y E  AR +VR+LL  + Y H  +VVHRD+KPENLLL    DD  +K+ADFGFA+ ++V +   +  CGTP YVAPEIL+G  YG  VD+WS+GV+T++LL GYPPF+D  +  LFRKI +G+Y+F SP+WD+VS +AK+FI  MLVV+   R TAA+L++HRWI G   A  +P        R + AR++ +AA  +V
Sbjct:   93 LTEVSILKAMDHPNIMTLREFFAEPEHYYLVTEFVSGGELFDRIVEKTFYSEKEARDLVRILLDAIKYCHDKDVVHRDLKPENLLLTSATDDASIKLADFGFAKKVTVDDAGLATTCGTPGYVAPEILEGASYGKPVDIWSIGVITYILLAGYPPFHDDSQPILFRKIRKGKYQFDSPYWDNVSTDAKEFIGRMLVVNPAERATAAELMQHRWITGTDVA-TVPLTSALTELRRFHARKKFKAAVLSV 339
[Close]
BLAST of mRNA_P-wetherbeei_contig1539.1.2 vs. uniprot
Match: A0A6G0WPI1_9STRA (Protein kinase domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WPI1_9STRA)

HSP 1 Score: 243 bits (621), Expect = 1.810e-68
Identity = 116/249 (46.59%), Postives = 164/249 (65.86%), Query Frame = 2 
Query: 2612 MANMPLRNQISHPHIVQLIEVFREAHMCYLVMELVRGGELFDRIVARTCYDEVTARGIVRLLLMTVHYLHSHNVVHRDIKPENLLLMRHNDDCQVKIADFGFAEHISVLEECSAV-CGTPQYVAPEILQGQRYGATVDVWSMGVVTFVLLGGYPPFYDREKKQLFRKIVRGQYEFHSPFWDHVSQEAKDFIRCMLVVDARSRRTAAQLLEHRWIRGPSAARLLPGPGGERHFRNYDARRRLRAAGFAVI 3355
            +  + +  ++ HP+I++L EV+ E     L+ E V GGELFDRIV +TCY E  AR +V+ LL    Y H+ N+VHRD+KPEN+LL+   DD   K+ADFGFA+ I V ++     CGTP YVAPE+L+G  YG  VD+WS+GV+T++LL GYPPF++  +  LF+ + +G++ FHSP+WD +S+ AK FIR ML VDA  R +A  LLEH WI G +   +       +  R ++A RR +AA  AV+
Sbjct:   73 ITEVSVLKEMDHPNIIKLYEVYSEPDQFILITEFVEGGELFDRIVDKTCYTEREARDVVKSLLQVTAYFHAANIVHRDLKPENILLVHREDDAVFKLADFGFAKRIDVSQDGLVTQCGTPGYVAPEVLRGTSYGTGVDIWSIGVITYILLCGYPPFHNENRNLLFQAVKKGEFTFHSPYWDEISETAKSFIRAMLTVDASKRPSAVVLLEHEWITGRNVGTVQLSDA-LKQLRQFNAHRRFKAASIAVM 320
[Close]
BLAST of mRNA_P-wetherbeei_contig1539.1.2 vs. uniprot
Match: M4C058_HYAAE (Protein kinase domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C058_HYAAE)

HSP 1 Score: 244 bits (624), Expect = 1.820e-68
Identity = 122/242 (50.41%), Postives = 166/242 (68.60%), Query Frame = 2 
Query: 2636 QISHPHIVQLIEVFREAHMCYLVMELVRGGELFDRIVARTCYDEVTARGIVRLLLMTVHYLHSHNVVHRDIKPENLLLMRHNDDCQVKIADFGFAEHISVLEE-CSAVCGTPQYVAPEILQGQRYGATVDVWSMGVVTFVLLGGYPPFYDREKKQLFRKIVRGQYEFHSPFWDHVSQEAKDFIRCMLVVDARSRRTAAQLLEHRWIRGPSAARLLPGPGGERHFRNYDARRRLRAAGFAVIA 3358
            Q+ HP+I+ L EVF E    YLV E V GGELFDRIV +T Y E  AR +V++L+  + Y H  NVVHRD+KPENLLL+  +DD  +K+ADFGFA+ +S      +  CGTP YVAPEIL+G  YG  VD+WS+G++T++LL GYPPF+D  +  LF+KI +G++ F SP+WD+VS +AK+FI  MLVV+ ++R TA +LLEH WI G   A  +P        R + AR++ +AA  +V A
Sbjct:  111 QLKHPNIMTLEEVFIEPEYYYLVTEFVSGGELFDRIVQKTFYTEKAARDLVKILIGAIKYCHDQNVVHRDLKPENLLLLSADDDASIKLADFGFAKTVSKDSNGLATTCGTPGYVAPEILEGASYGKPVDIWSIGIITYILLAGYPPFHDESQSVLFKKIRKGKFYFDSPYWDNVSTDAKEFISKMLVVNPKNRATAEELLEHPWITGTDLA-TVPLTSALTELRRFHARKKFKAAVHSVQA 351
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1539.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZHC9_9STRA9.380e-9664.14Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A7S3XZF5_HETAK4.770e-7953.52Phosphorylase kinase n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S2XV40_9STRA9.750e-7248.25Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A4D9CNB5_9STRA3.780e-7050.81Protein kinase domain-containing protein n=2 Tax=M... [more]
A0A662YHU2_9STRA1.020e-6950.00Protein kinase domain-containing protein n=2 Tax=N... [more]
G4ZAF6_PHYSP6.730e-6950.83Protein kinase domain-containing protein n=7 Tax=P... [more]
A0A6A4Z0M1_9STRA7.130e-6951.49Protein kinase domain-containing protein n=5 Tax=A... [more]
A0A8K1CDJ7_PYTOL8.180e-6949.60Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6G0WPI1_9STRA1.810e-6846.59Protein kinase domain-containing protein n=1 Tax=A... [more]
M4C058_HYAAE1.820e-6850.41Protein kinase domain-containing protein n=1 Tax=H... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1539contigP-wetherbeei_contig1539:1973..7019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog36331.EPrPI00000014787
PFAMsPkinase
Model size3517
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons7
Evalue1.7e-73
EggNOG OGsKOG0033@1|root,KOG0033@2759|Eukaryota,1MJDT@121069|Pythiales
DescriptionCalcium calmodulin dependent protein kinase. Source PGD
Cds size1731
COG categoryT
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1539.1.2prot_P-wetherbeei_contig1539.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1539 3999..7019 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186054.1860912-UTR-P-wetherbeei_contig1539:1972..28531683186054.1860912-UTR-P-wetherbeei_contig1539:1972..2853Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1539 1973..2853 +
1683186054.197971-UTR-P-wetherbeei_contig1539:3093..39981683186054.197971-UTR-P-wetherbeei_contig1539:3093..3998Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1539 3094..3998 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186054.2102547-CDS-P-wetherbeei_contig1539:3998..43841683186054.2102547-CDS-P-wetherbeei_contig1539:3998..4384Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1539 3999..4384 +
1683186054.229264-CDS-P-wetherbeei_contig1539:4396..50811683186054.229264-CDS-P-wetherbeei_contig1539:4396..5081Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1539 4397..5081 +
1683186054.24269-CDS-P-wetherbeei_contig1539:5363..54731683186054.24269-CDS-P-wetherbeei_contig1539:5363..5473Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1539 5364..5473 +
1683186054.2527714-CDS-P-wetherbeei_contig1539:5803..59331683186054.2527714-CDS-P-wetherbeei_contig1539:5803..5933Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1539 5804..5933 +
1683186054.2711587-CDS-P-wetherbeei_contig1539:6229..63611683186054.2711587-CDS-P-wetherbeei_contig1539:6229..6361Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1539 6230..6361 +
1683186054.2843978-CDS-P-wetherbeei_contig1539:6731..70191683186054.2843978-CDS-P-wetherbeei_contig1539:6731..7019Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1539 6732..7019 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1539.1.2

>prot_P-wetherbeei_contig1539.1.2 ID=prot_P-wetherbeei_contig1539.1.2|Name=mRNA_P-wetherbeei_contig1539.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=577bp
MARTRARDYISKWQQDFSISRSSAQQFLLQQRYSSFALYLPRRSTPHNGS
SAALKRRNKGSGVEPRRDVAETCDQVCFELAAVPSIDPFAYGCIFFRQKR
MEGDRCLKQRRLSFFLAQRWLPKRQRRRQSGASPLSSAGLVAGHRPARHA
VGPIHAAGPVIVVGIAARGAAPRGWSGEVPCRHVSILFATVPLVAPIFMP
FADRPGRTFCRVSTVAPITTLFFSLPLCCYLQSHGLGFRCTFDGASALSW
RPFRDCSGRGFWRRLFDNGGKWRLGMANMPLRNQISHPHIVQLIEVFREA
HMCYLVMELVRGGELFDRIVARTCYDEVTARGIVRLLLMTVHYLHSHNVV
HRDIKPENLLLMRHNDDCQVKIADFGFAEHISVLEECSAVCGTPQYVAPE
ILQGQRYGATVDVWSMGVVTFVLLGGYPPFYDREKKQLFRKIVRGQYEFH
SPFWDHVSQEAKDFIRCMLVVDARSRRTAAQLLEHRWIRGPSAARLLPGP
GGERHFRNYDARRRLRAAGFAVIAAHRLQTRAKRARAGGGGGSPATPQWR
ATAESRLDSDEDLENSVVAVAVPLQMG
back to top

mRNA from alignment at P-wetherbeei_contig1539:1973..7019+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1539.1.2 ID=mRNA_P-wetherbeei_contig1539.1.2|Name=mRNA_P-wetherbeei_contig1539.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=5047bp|location=Sequence derived from alignment at P-wetherbeei_contig1539:1973..7019+ (Phaeothamnion wetherbeei SAG_119_79)
GGGAAGGGTGTAAAGAAGAGACATGATAGAGGAAGTAAACACATTGGTTT
TTGCGGCAGGCGACCTTTCGGCATTCTTCACTATCCCACATGTGGCTGCT
TGTGTGTCCCTTTTTTACAGCTCCTGACTGAGCGTTTCACGTAAGAGTTG
AGTGCAGAAACTGGTGCCGCCACCAGGCCGCCGAGACGCAGCAAGTTCGC
AACAGTATCACCAGCCTCCGCAGGCTCCTGGAAAACGTCCGCTCCCAAAG
CGTGCCGCCAAGCCGTCCCCCCGTTGTCTTTTTTATCTTCCACCCTACAG
GAGGCCTCGCAGACGTACGGCGAATTGTGCATCTTTAGCTGGCGGGGAAA
CCATGAGTTTTCGGCCCGCTATGGACGCTCCCTGTCAAAGAGCTGTTATC
TCGAAATGAGAAGACTTTCCTTGGCGAAGGAAAGAACCTATGGAGGCACC
GAACGGAAGTAACTAACATAGTAAGATCGGAATTTTCCTCGTGAATTACG
TGGTCGTGGCCTGCCTTTGGGTGTTCTGAAGCTGCCTGCCTTTGGCTCTC
TGACGAGTCCTTCGTCCTAAGAAGCTTAAAAGCTCTCGGAAACTAAGGAG
TCTCCTCCCTGTGCCAAGCTTGGGGGAGAGAATTTACCAATCGCATGGGG
AATACGGGCAGTGTGAGGAAGCCACTACCACCTTCCAGAGAAATGTCTGG
TCTCAAAAAGCCACCAAGCAATAGCTCTCTGCGCAAGACTTCATCAGGCA
TGCCTCCCTCGCCGCTGCTAGCAGCGGAGGAGGAGAGGCAACGGCAATCC
TCGGAGAGACAGACGAGCACCGAATCATCATCAACTTCACCCACAGAGGC
CTACGAGGTTCAAAATCGGCGGTTCGAAGAGGTGAGGTTCCGCGTCGAAA
ACCAGTGTGGGAACAGCGACCGCTTTCCTTGCATCAACTGGTCTATTTTC
CACAATAATTCGACGCACTATAAGAGATTCATTCTCCCTCTCTCTTTTCC
CCGAGAGGAAAAAAGCTGCTCTGTCCTGCGACCCGCGTCGTCTCCGTCTC
GTAAATCACCCTTTCACCTTGAAACGCTGGTGCGAGTTTCCTTTTCCAAC
TTCCTTGGGCCGTCCTGACAGGTGTATGAAATGCTGGAGCGGCTCGGCGC
GGGCTCTTTCTCTGTCGTGCACCACTGCCGGCACCGGGTGGACGGCGGCT
CATTTGCCGTAAAGTGCATCGACTTGGACAAGCTCGTCCCCGAGGACAAG
GCCGCCCTCAACAACGAGATTCTCATCCTCAATGAGGTGAGAAAGAAACG
ACGGCGGAAGTGGGATTTTTGTTTGGGGAGGGGGTTTTGACGGGTGAAGT
GACGGGCGGGACGAACTAACGGTGATTTGTTCGAGGTTGACCGGCTAATC
AGCAGCTCTCGCCAAGAGGCAGCGGCGGCTCGGGCTGCTTGGCAGCTTCG
CGTTTCCCACCACGACGTTCCCCTGTGCCAGCTTTTTTTCCGTATTATTT
TCTGTATTTACTATCGAGCCGAGGAGCGCCTTCCTGCATTCCTACGCGTC
CACTTTCTTCCGTGCTGTCTATCCTACATTAGATTTCTTTTTCACCTTGC
GATGAAATTTTTCGCGGAAGTGCGATTCGAACCGGTTATTTCCCGATTCA
GGTTGAGTTACCTTCTGGTGGACTTTCCTTTTCTCGTTTCATCCGTTTTA
CCCCATTGCCTATTGCAAGGGCGAAAATAGAAGTAGGAAAGATCGATAGC
GGCGTAGGCAGTTATGGGCTCAGCAGAGAAGCTGACGGCTGCTGCTGACG
CCGCCGCCGCCCCAGGAATTGGCGATTCATTTAGCTGAGTTTTGTGGATG
GAAGGTGACTATATGGACAAAAGCGTCGACAAGCGTCCAATGAGCGTTTC
GGCCTCGATGGCGATGTCAGGTGCTACAGTCTCAGATGGGAACTTTTGCC
TGATCCGAGCAGCATGGAAGCTTAGCGGGTCTCTGATGCATGTGATGCCA
AAATCTGATTGTTGGAATCCGGCCGGATGGCTCGAACGCGCGCCAGGGAC
TACATCAGCAAATGGCAGCAGGATTTTAGTATCTCGCGTAGTTCAGCGCA
GCAGTTTCTTCTGCAACAACGGTATAGTTCATTCGCCTTATATCTGCCAC
GGCGCTCGACGCCGCACAATGGCAGTTCAGCGGCTCTGAAACGAAGGAAC
AAAGGCAGCGGCGTGGAGCCGCGGCGTGACGTAGCTGAAACATGCGACCA
AGTGTGCTTTGAACTCGCTGCCGTTCCGTCGATAGATCCCTTCGCTTACG
GATGCATTTTTTTCCGACAGAAGAGAATGGAAGGCGACCGGTGCCTGAAA
CAACGAAGGCTCTCGTTTTTTCTGGCGCAGCGCTGGCTGCCTAAACGACA
GCGGCGACGACAGCGGAGGAGCAGGAGCGGCGCCTCCCCGTTGTCCTCTG
CTGGGTTGGTTGCCGGCCATCGGCCGGCGCGCCATGCTGTCGGGCCCATT
CATGCTGCCGGCCCTGTCATCGTTGTTGGCATTGCCGCCAGAGGAGCGGC
GCCACGCGGCTGGTCCGGAGAGGTCCCATGCCGCCACGTTTCCATTCTTT
TTGCTACCGTGCCTTTAGTTGCGCCCATTTTTATGCCTTTTGCGGACCGG
CCTGGCCGGACCTTCTGCCGTGTCTCAACTGTTGCCCCTATCACCACCCT
TTTCTTTTCGCTCCCGCTCTGCTGTTACCTCCAATCCCACGGCTTGGGAT
TTCGCTGCACTTTCGACGGCGCTTCGGCGTTGTCTTGGCGGCCTTTCCGC
GACTGCTCTGGACGTGGTTTTTGGCGGCGGCTGTTTGACAATGGCGGCAA
ATGGCGGCTTGGAATGGCTAACATGCCCCTGCGCAATCAGATCTCGCACC
CGCATATAGTGCAGCTGATCGAGGTGTTCCGAGAGGCGCACATGTGCTAC
CTGGTGATGGAGCTGGTGCGTGGCGGCGAGCTGTTCGACCGCATCGTGGC
GCGGACATGCTACGATGAGGTGACAGCCCGCGGCATCGTGCGGCTGCTGC
TCATGACCGTGCACTACCTCCACTCGCACAACGTCGTTCACCGCGACATT
AAGCCTGAGGTGCGTCAGAATCCGTCAGTAATGCGGCAGTAATGCAGTCA
GTGGTGCGGCTGCGCGGCAGTGTTGACTCTGTGGCCTGTTTTTATTGACA
TCCTGGTGGGGAAACCTGACTGGCTAGGGGAGACAGAAATGGTGGCGTCT
GGTTTCCAATTCCTTTTTTCCTCATTTTCGTTGTGCTTTCTTGTCTTTAT
CCGGTTCTGTCCTTTCCAAGCGGAAATCTCATCGCCTCACTTCCACGCGT
CCGTTTCGTCGCTCGTCGCTGCACCGCGCCATGCTCCGCAGAACTTGCTG
TTGATGCGACACAACGACGACTGCCAGGTCAAGATCGCCGATTTCGGCTT
TGCGGAGCACATTAGCGTGCTAGAGGAGTGCAGCGCCGTCTGCGGAACGC
CGTGAGTCGCGGAAAAGGGCCGCTTTTTGGGGCCGATTTGCTGCCGCTGA
CTGGGATCAGTTGGGTTTAATTGCCTCGATGCTTGCTGTTTGCTGTTTGG
AAAGAGTGCCGCCGGCCCCAAGAGATTGTTGTCGATACCTTCTGCTTTTA
TTTCCTTTCTTCCCTTTCTGCCTTAACCTACGCCCAGCTCTCTTCCATTT
TCTTTCTGCTTTCCTATTATCCGATTCCGCTGCACCCGACCCTGCGGGCG
CTTCTCCGGCATATCTGTCCCCTGAACGTGTCCTGCCCGTTCGCTCGATA
ATCCGCCCGCCTGCCGGCCGGCCCGCCACAGGCAATACGTGGCCCCGGAG
ATCCTGCAGGGGCAGCGGTACGGGGCGACAGTGGACGTATGGAGCATGGG
CGTGGTAACCTTCGTGCTGCTCGGCGGCTACCCGCCCTTCTACGATCGGG
AAAAGAAACAGGCGAGCTTCTGTGCTGCTCTCCTGCCGCCGCCGCTGCCG
CCGGCTGCGGCCATCGGAGCAGGGCAAACGAGATGTCTGTGAAGTAGAAG
TTTTGATTAGGGTTGCCAGTCTTCTTTCCTGTGCCTTCTCTTCCTACGCC
TTTCCACATTGCGTGCCTCTCTAACGCGCGCTCCATCTTATGTGCCGTAA
ACGCGTTCCTTCTCCGCCCCGGCACCGGTGCCCGCCCCTTTCCCGCTCTT
GGCCCATTCTGGTGATCCGGATCCGACCCGGAAATGAATGACTGAATGGC
GTTGCAGCTGTTCCGCAAGATCGTCCGGGGTCAGTACGAGTTTCACTCGC
CCTTCTGGGACCACGTGAGCCAGGAGGCCAAGGACTTCATCCGCTGCATG
CTCGTCGTCGACGCCCGCAGCCGCCGAACTGCTGCCCAGGCGAGTCTAGT
ACGCGATACAGCCGTCGGTGGTTTGCGGCTCTCGGGAGGGAGCGGGAGGG
AGCGGGAGGGAGCGCCGCCGCTGGGCTGCGCGGCTGCGCGATTTGCAGTG
TGGGCGTGGAGGGAGGAACGGAGCTGGCGGCTGCAGGCTGGAGCTGTCTT
TCTTTTCTTTTCTTTTCTTTTCTTTTGGTATGGGGCGATTGGGCGGTCTT
CCTTAGGCATTTCCGTTTGCCGTCGTGTGATGGCACCGTTTTCCGCGTTT
TGGTTTTAATTCGTCCAGTTCGTCGTCACCGTGGAGGTATCTTAAATGCT
TTCCTCTAATCCCTCTTCGCCCTCTCTCCTTCTCCACCACCGTGTTGCTG
TTCCGGCAGCTGCTGGAGCACCGGTGGATACGCGGGCCGTCCGCCGCGCG
GCTGCTGCCCGGCCCTGGCGGAGAGCGGCACTTTCGCAACTACGACGCCC
GGCGCCGGCTGCGCGCCGCCGGCTTTGCTGTCATCGCCGCCCACCGCCTC
CAGACCCGCGCCAAGCGGGCCCGCGCTGGCGGCGGCGGCGGGTCGCCGGC
GACGCCGCAGTGGCGGGCGACGGCGGAGTCCAGGCTGGACAGCGACGAGG
ACCTGGAGAACTCCGTCGTGGCCGTGGCCGTCCCGCTTCAGATGGGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1539:1973..7019+

>mRNA_P-wetherbeei_contig1539.1.2 ID=mRNA_P-wetherbeei_contig1539.1.2|Name=mRNA_P-wetherbeei_contig1539.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1731bp|location=Sequence derived from alignment at P-wetherbeei_contig1539:1973..7019+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTCGAACGCGCGCCAGGGACTACATCAGCAAATGGCAGCAGGATTT
TAGTATCTCGCGTAGTTCAGCGCAGCAGTTTCTTCTGCAACAACGGTATA
GTTCATTCGCCTTATATCTGCCACGGCGCTCGACGCCGCACAATGGCAGT
TCAGCGGCTCTGAAACGAAGGAACAAAGGCAGCGGCGTGGAGCCGCGGCG
TGACGTAGCTGAAACATGCGACCAAGTGTGCTTTGAACTCGCTGCCGTTC
CGTCGATAGATCCCTTCGCTTACGGATGCATTTTTTTCCGACAGAAGAGA
ATGGAAGGCGACCGGTGCCTGAAACAACGAAGGCTCTCGTTTTTTCTGGC
GCAGCGCTGGCTGCCTAAACGACAGCGGCGACGACAGAGCGGCGCCTCCC
CGTTGTCCTCTGCTGGGTTGGTTGCCGGCCATCGGCCGGCGCGCCATGCT
GTCGGGCCCATTCATGCTGCCGGCCCTGTCATCGTTGTTGGCATTGCCGC
CAGAGGAGCGGCGCCACGCGGCTGGTCCGGAGAGGTCCCATGCCGCCACG
TTTCCATTCTTTTTGCTACCGTGCCTTTAGTTGCGCCCATTTTTATGCCT
TTTGCGGACCGGCCTGGCCGGACCTTCTGCCGTGTCTCAACTGTTGCCCC
TATCACCACCCTTTTCTTTTCGCTCCCGCTCTGCTGTTACCTCCAATCCC
ACGGCTTGGGATTTCGCTGCACTTTCGACGGCGCTTCGGCGTTGTCTTGG
CGGCCTTTCCGCGACTGCTCTGGACGTGGTTTTTGGCGGCGGCTGTTTGA
CAATGGCGGCAAATGGCGGCTTGGAATGGCTAACATGCCCCTGCGCAATC
AGATCTCGCACCCGCATATAGTGCAGCTGATCGAGGTGTTCCGAGAGGCG
CACATGTGCTACCTGGTGATGGAGCTGGTGCGTGGCGGCGAGCTGTTCGA
CCGCATCGTGGCGCGGACATGCTACGATGAGGTGACAGCCCGCGGCATCG
TGCGGCTGCTGCTCATGACCGTGCACTACCTCCACTCGCACAACGTCGTT
CACCGCGACATTAAGCCTGAGAACTTGCTGTTGATGCGACACAACGACGA
CTGCCAGGTCAAGATCGCCGATTTCGGCTTTGCGGAGCACATTAGCGTGC
TAGAGGAGTGCAGCGCCGTCTGCGGAACGCCGCAATACGTGGCCCCGGAG
ATCCTGCAGGGGCAGCGGTACGGGGCGACAGTGGACGTATGGAGCATGGG
CGTGGTAACCTTCGTGCTGCTCGGCGGCTACCCGCCCTTCTACGATCGGG
AAAAGAAACAGCTGTTCCGCAAGATCGTCCGGGGTCAGTACGAGTTTCAC
TCGCCCTTCTGGGACCACGTGAGCCAGGAGGCCAAGGACTTCATCCGCTG
CATGCTCGTCGTCGACGCCCGCAGCCGCCGAACTGCTGCCCAGCTGCTGG
AGCACCGGTGGATACGCGGGCCGTCCGCCGCGCGGCTGCTGCCCGGCCCT
GGCGGAGAGCGGCACTTTCGCAACTACGACGCCCGGCGCCGGCTGCGCGC
CGCCGGCTTTGCTGTCATCGCCGCCCACCGCCTCCAGACCCGCGCCAAGC
GGGCCCGCGCTGGCGGCGGCGGCGGGTCGCCGGCGACGCCGCAGTGGCGG
GCGACGGCGGAGTCCAGGCTGGACAGCGACGAGGACCTGGAGAACTCCGT
CGTGGCCGTGGCCGTCCCGCTTCAGATGGGG
back to top