mRNA_P-wetherbeei_contig15378.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15378.1.1
Unique NamemRNA_P-wetherbeei_contig15378.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15378.1.1 vs. uniprot
Match: A0A7S2US42_9STRA (COX assembly mitochondrial protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2US42_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 2.500e-18
Identity = 36/68 (52.94%), Postives = 50/68 (73.53%), Query Frame = 1
Query:    1 RLQEELKLIALKKCDDQVRAFVECSKANGILVVLSCRRESAGMNECLHTYTNPERFAEYKTIREAELL 204
            RLQ+EL  +AL+KC DQV+AF +CSK +G LV+ SCR ++  MNECLH+YT+ E    Y+  RE +L+
Sbjct:   21 RLQQELNEVALQKCADQVKAFADCSKDSGFLVIWSCREQNKAMNECLHSYTSQECLEAYQREREQQLM 88          
BLAST of mRNA_P-wetherbeei_contig15378.1.1 vs. uniprot
Match: D8LC11_ECTSI (COX assembly mitochondrial protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC11_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 2.270e-17
Identity = 38/67 (56.72%), Postives = 47/67 (70.15%), Query Frame = 1
Query:    1 RLQEELKLIALKKCDDQVRAFVECSKANGILVVLSCRRESAGMNECLHTYTNPERFAEYKTIREAEL 201
            RL+EELK IALK+CDD V  F  C++  G+LVV SCR ++A MN CL+ +TN E F  YK  RE EL
Sbjct:   22 RLREELKEIALKRCDDSVAKFAACAREKGMLVVFSCREQNALMNSCLNQHTNEESFDRYKFEREIEL 88          
BLAST of mRNA_P-wetherbeei_contig15378.1.1 vs. uniprot
Match: A0A1V9Z786_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z786_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 3.600e-15
Identity = 32/63 (50.79%), Postives = 47/63 (74.60%), Query Frame = 1
Query:    1 RLQEELKLIALKKCDDQVRAFVECSKANGILVVLSCRRESAGMNECLHTYTNPERFAEYKTIR 189
            +L +EL  IALKKC D+ +AFV+CS  +G+LVV  CR+++A +N CLH YTNPE + ++K  +
Sbjct:  254 KLHQELNTIALKKCYDKTKAFVDCSHEHGLLVVFKCRQQNADLNACLHEYTNPEAYEKFKASK 316          
BLAST of mRNA_P-wetherbeei_contig15378.1.1 vs. uniprot
Match: A0A7S1HEC8_HEMAN (COX assembly mitochondrial protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HEC8_HEMAN)

HSP 1 Score: 66.6 bits (161), Expect = 2.190e-12
Identity = 26/58 (44.83%), Postives = 42/58 (72.41%), Query Frame = 1
Query:   28 ALKKCDDQVRAFVECSKANGILVVLSCRRESAGMNECLHTYTNPERFAEYKTIREAEL 201
            A KKCD  ++AFV+CSKANG++VV +CR+++  M +C+H  T  E++   +  R+AE+
Sbjct:   44 AAKKCDPIIKAFVDCSKANGLMVVFNCRKQNEAMQQCMHEETTEEKYEAVRVQRQAEM 101          
BLAST of mRNA_P-wetherbeei_contig15378.1.1 vs. uniprot
Match: A0A7S2RG50_9STRA (COX assembly mitochondrial protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RG50_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.990e-11
Identity = 24/47 (51.06%), Postives = 36/47 (76.60%), Query Frame = 1
Query:   40 CDDQVRAFVECSKANGILVVLSCRRESAGMNECLHTYTNPERFAEYK 180
            CDD+VRAFV+CSK NG++V+  CR E+  MNEC+  YT  E++ +++
Sbjct:   33 CDDKVRAFVDCSKENGLMVIFRCREENKIMNECVQNYTTDEKWEQFR 79          
BLAST of mRNA_P-wetherbeei_contig15378.1.1 vs. uniprot
Match: A0A433QLM6_9FUNG (COX assembly mitochondrial protein n=2 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QLM6_9FUNG)

HSP 1 Score: 62.8 bits (151), Expect = 4.130e-11
Identity = 28/60 (46.67%), Postives = 41/60 (68.33%), Query Frame = 1
Query:   10 EELKLIALKKCDDQVRAFVECSKANGILVVLSCRRESAGMNECLHTYTNPERFAEYKTIR 189
            +ELK  ALKKCDD ++ FV+CSK + + V+ SCR +S  MN+CL++YT  E   + K  +
Sbjct:   34 KELKATALKKCDDVIQDFVQCSKDHTVTVIFSCRGKSRVMNKCLNSYTTQEELDKLKLTK 93          
BLAST of mRNA_P-wetherbeei_contig15378.1.1 vs. uniprot
Match: A0A7S0YVI3_9CRYP (COX assembly mitochondrial protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YVI3_9CRYP)

HSP 1 Score: 58.2 bits (139), Expect = 5.140e-9
Identity = 26/58 (44.83%), Postives = 38/58 (65.52%), Query Frame = 1
Query:   28 ALKKCDDQVRAFVECSKANGILVVLSCRRESAGMNECLHTYTNPERFAEYKTIREAEL 201
            A KKCD  ++AFV+CSKAN ++VV +CR +S  MN C+   T  E +   +T R+A +
Sbjct:   51 AAKKCDPFIKAFVDCSKANNLMVVFNCRNQSHEMNLCMAAETTEEIYETVRTQRQAAM 108          
BLAST of mRNA_P-wetherbeei_contig15378.1.1 vs. uniprot
Match: A0A316YZ82_9BASI (COX assembly mitochondrial protein n=1 Tax=Acaromyces ingoldii TaxID=215250 RepID=A0A316YZ82_9BASI)

HSP 1 Score: 51.6 bits (122), Expect = 6.160e-7
Identity = 24/57 (42.11%), Postives = 32/57 (56.14%), Query Frame = 1
Query:    4 LQEELKLIALKKCDDQVRAFVECSKANGILVVLSCRRESAGMNECLHTYTNPERFAE 174
            L +E K  ALKKCDD V+ F +CS    + V  +CR +   + +CL  YT PE   E
Sbjct:   14 LLKETKQEALKKCDDVVKDFAQCSSGRTVSVAWACRDQHRKLQDCLKQYTGPEAMEE 70          
BLAST of mRNA_P-wetherbeei_contig15378.1.1 vs. uniprot
Match: A0A066VUL6_TILAU (COX assembly mitochondrial protein n=1 Tax=Tilletiaria anomala (strain ATCC 24038 / CBS 436.72 / UBC 951) TaxID=1037660 RepID=A0A066VUL6_TILAU)

HSP 1 Score: 49.3 bits (116), Expect = 5.320e-6
Identity = 23/53 (43.40%), Postives = 32/53 (60.38%), Query Frame = 1
Query:    4 LQEELKLIALKKCDDQVRAFVECSKANGILVVLSCRRESAGMNECLHTYTNPE 162
            L ++ K  ALKKCD+ V+AF +CS+   I V  +CR +   M  CL  YT+ E
Sbjct:   14 LLKQTKADALKKCDEFVKAFADCSRGRTISVAWACRGDHKAMQGCLRQYTSEE 66          
BLAST of mRNA_P-wetherbeei_contig15378.1.1 vs. uniprot
Match: A0A5J4Z510_PORPP (COX assembly mitochondrial protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z510_PORPP)

HSP 1 Score: 47.4 bits (111), Expect = 5.960e-5
Identity = 20/51 (39.22%), Postives = 29/51 (56.86%), Query Frame = 1
Query:   28 ALKKCDDQVRAFVECSKANGILVVLSCRRESAGMNECLHTYTNPERFAEYK 180
            A  +CD + +AF ECSK  G++VV  CR E   +N+CL  ++  E     K
Sbjct:   49 AWMQCDPETKAFYECSKREGLMVVFKCRGEKNVLNDCLKQFSTEENHIALK 99          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15378.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A7S2US42_9STRA2.500e-1852.94COX assembly mitochondrial protein n=1 Tax=Fibroca... [more]
D8LC11_ECTSI2.270e-1756.72COX assembly mitochondrial protein n=2 Tax=Ectocar... [more]
A0A1V9Z786_9STRA3.600e-1550.79Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A7S1HEC8_HEMAN2.190e-1244.83COX assembly mitochondrial protein n=2 Tax=Hemisel... [more]
A0A7S2RG50_9STRA2.990e-1151.06COX assembly mitochondrial protein n=1 Tax=labyrin... [more]
A0A433QLM6_9FUNG4.130e-1146.67COX assembly mitochondrial protein n=2 Tax=Jimgerd... [more]
A0A7S0YVI3_9CRYP5.140e-944.83COX assembly mitochondrial protein n=1 Tax=Hemisel... [more]
A0A316YZ82_9BASI6.160e-742.11COX assembly mitochondrial protein n=1 Tax=Acaromy... [more]
A0A066VUL6_TILAU5.320e-643.40COX assembly mitochondrial protein n=1 Tax=Tilleti... [more]
A0A5J4Z510_PORPP5.960e-539.22COX assembly mitochondrial protein n=1 Tax=Porphyr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15378contigP-wetherbeei_contig15378:1091..1553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LC11
PFAMsCmc1
Model size219
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.72e-18
EggNOG OGs2E44D@1|root,2SB2S@2759|Eukaryota
Ec32 ortholog descriptionCytochrome c oxidase biogenesis protein Cmc1-like
Ec32 orthologEc-20_004030.1
DescriptionCytochrome c oxidase biogenesis protein Cmc1 like
Cds size219
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186053.7824504-CDS-P-wetherbeei_contig15378:1090..11411683186053.7824504-CDS-P-wetherbeei_contig15378:1090..1141Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15378 1091..1141 +
1683186053.795174-CDS-P-wetherbeei_contig15378:1385..15531683186053.795174-CDS-P-wetherbeei_contig15378:1385..1553Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15378 1386..1553 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15378.1.1prot_P-wetherbeei_contig15378.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15378 1091..1553 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15378.1.1

>prot_P-wetherbeei_contig15378.1.1 ID=prot_P-wetherbeei_contig15378.1.1|Name=mRNA_P-wetherbeei_contig15378.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=73bp
RLQEELKLIALKKCDDQVRAFVECSKANGILVVLSCRRESAGMNECLHTY
TNPERFAEYKTIREAELLEQSS*
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mRNA from alignment at P-wetherbeei_contig15378:1091..1553+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15378.1.1 ID=mRNA_P-wetherbeei_contig15378.1.1|Name=mRNA_P-wetherbeei_contig15378.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=463bp|location=Sequence derived from alignment at P-wetherbeei_contig15378:1091..1553+ (Phaeothamnion wetherbeei SAG_119_79)
CGTCTCCAAGAAGAGCTCAAGTTGATTGCACTGAAGAAGTGCGACGACCA GGTCAATGACAATGGGACCACTTCTTCGCATTCTTTTTCTCCCCGTCCCC TTGTCAGAATCCTAAGCAACAGAGAAAAACTGAACAATGTGGTCGTTGGC GATGAGGACGTTCGCCTATTACACCATGGCCATCATACCACTGATCATTA ATTGCCTCTCTTGCGCATCCTTCCGATGCATCCCCCGCCGCCATCTGCAT TTGTGATCTGCGTGTACGGCGTCTATTACTGTGGCATTGCATCAGGTGCG GGCCTTTGTGGAATGCTCCAAAGCGAACGGCATCCTCGTGGTGCTCTCAT GCCGCCGGGAGAGCGCCGGCATGAACGAGTGCCTCCACACTTACACCAAC CCAGAGCGCTTCGCCGAATACAAGACCATACGGGAGGCGGAACTGCTTGA ACAGTCATCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15378:1091..1553+

>mRNA_P-wetherbeei_contig15378.1.1 ID=mRNA_P-wetherbeei_contig15378.1.1|Name=mRNA_P-wetherbeei_contig15378.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=219bp|location=Sequence derived from alignment at P-wetherbeei_contig15378:1091..1553+ (Phaeothamnion wetherbeei SAG_119_79)
CGTCTCCAAGAAGAGCTCAAGTTGATTGCACTGAAGAAGTGCGACGACCA
GGTGCGGGCCTTTGTGGAATGCTCCAAAGCGAACGGCATCCTCGTGGTGC
TCTCATGCCGCCGGGAGAGCGCCGGCATGAACGAGTGCCTCCACACTTAC
ACCAACCCAGAGCGCTTCGCCGAATACAAGACCATACGGGAGGCGGAACT
GCTTGAACAGTCATCCTGA
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