mRNA_P-wetherbeei_contig1535.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1535.2.1
Unique NamemRNA_P-wetherbeei_contig1535.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1535.2.1 vs. uniprot
Match: A0A6H5KCI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCI5_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 1.180e-51
Identity = 96/163 (58.90%), Postives = 121/163 (74.23%), Query Frame = 1 
Query:    4 VVLNDVEFF-GAGDMFLDSLSRVVAALAASPAYTGARSAEEIRERILCKASRTTSGSDSYFTVERLVGSDHFLLKPRDDGPQAPIRVEVYLVDNAIHSVVTCANRYGLYDLGEIDDASQSMRLRKPTVWLELDTTVVEKTDYRTNRNVRYLRIEAPEAEAAPQ 489
            V+LN V+FF G G++FL+SL +VV  L+ SPAY G R+  EI ER+LCKASRTTSGSDSYFTV++L  +  +LLK R + P A I VEV+LVDN+IHSVV CAN YGL+ L EI+  SQ+  +  P  WL LDT VVEKTDY T RNVRYLR++ P+  ++ Q
Sbjct:   56 VILNGVKFFSGHGELFLESLRQVVEILSKSPAYKGHRTGSEIVERVLCKASRTTSGSDSYFTVQQLFTNSDYLLKKRSERPPA-INVEVFLVDNSIHSVVACANYYGLFSLDEIEAESQTFAVHTPRAWLRLDTMVVEKTDYLTGRNVRYLRVDTPDLPSSQQ 217
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BLAST of mRNA_P-wetherbeei_contig1535.2.1 vs. uniprot
Match: A0A835YHT3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHT3_9STRA)

HSP 1 Score: 151 bits (381), Expect = 1.460e-40
Identity = 86/157 (54.78%), Postives = 108/157 (68.79%), Query Frame = 1 
Query:    4 VVLNDVEFFGAGDMFLDSLSRVVAALAASPAYTGARSAEEIRERILCKASRTTSGSDSYFTVERLVGSD-HFLLKPRDDGPQAPIRVEVYLVDNAIHSVVTCANRYGLYDLGEIDDASQSMRLRKPTVWLELDTTVVEKTDYRTNRNVRYLRIEAPE 471
            V+LN V FFG    FL +L RVV   A+S  YTGA +A EI +R+L KASRTTSGSDSYFTV++L  +D ++LLKPR      PI V+VYL D  IHS VTC N YGLY + +ID  +  + L+ P  WL LDTTVVE+T++ T +NVR+L I  PE
Sbjct:   56 VILNGVTFFGHSQQFLKALRRVVDVWASSLEYTGALTASEISQRVLRKASRTTSGSDSYFTVQQLFSADENYLLKPRGFA-LPPIEVDVYLSDGCIHSKVTCTNLYGLYSMDDIDCPTDGV-LKPPKPWLSLDTTVVEETNHNTCQNVRHLEIIIPE 210
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1535.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KCI5_9PHAE1.180e-5158.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YHT3_9STRA1.460e-4054.78Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1535contigP-wetherbeei_contig1535:2536..4407 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog157072.XP_008870762.1
Model size1070
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.26e-12
EggNOG OGs2APGJ@1|root,2RZGR@2759|Eukaryota
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-12_005660.1
Cds size732
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186052.9908085-UTR-P-wetherbeei_contig1535:2535..28311683186052.9908085-UTR-P-wetherbeei_contig1535:2535..2831Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1535 2536..2831 -
1683186053.0407305-UTR-P-wetherbeei_contig1535:4365..44071683186053.0407305-UTR-P-wetherbeei_contig1535:4365..4407Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1535 4366..4407 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186053.0080135-CDS-P-wetherbeei_contig1535:2831..31031683186053.0080135-CDS-P-wetherbeei_contig1535:2831..3103Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1535 2832..3103 -
1683186053.0186582-CDS-P-wetherbeei_contig1535:3413..35581683186053.0186582-CDS-P-wetherbeei_contig1535:3413..3558Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1535 3414..3558 -
1683186053.0278862-CDS-P-wetherbeei_contig1535:4050..43651683186053.0278862-CDS-P-wetherbeei_contig1535:4050..4365Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1535 4051..4365 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1535.2.1prot_P-wetherbeei_contig1535.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1535 2832..4365 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1535.2.1

>prot_P-wetherbeei_contig1535.2.1 ID=prot_P-wetherbeei_contig1535.2.1|Name=mRNA_P-wetherbeei_contig1535.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=244bp
MFLDSLSRVVAALAASPAYTGARSAEEIRERILCKASRTTSGSDSYFTVE
RLVGSDHFLLKPRDDGPQAPIRVEVYLVDNAIHSVVTCANRYGLYDLGEI
DDASQSMRLRKPTVWLELDTTVVEKTDYRTNRNVRYLRIEAPEAEAAPQH
AIPAGTGERSTAGVGGSGLIRPFGGSPESSSADPHRVVRASAGRDRGTGS
AGGGGGGWGNGGNGVGEGLAQFRPMALFGGGGDFARDRDRRVP*
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mRNA from alignment at P-wetherbeei_contig1535:2536..4407-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1535.2.1 ID=mRNA_P-wetherbeei_contig1535.2.1|Name=mRNA_P-wetherbeei_contig1535.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1872bp|location=Sequence derived from alignment at P-wetherbeei_contig1535:2536..4407- (Phaeothamnion wetherbeei SAG_119_79)
CAGGTGGTGCTGAACGACGTCGAATTCTTCGGCGCTGGCGACATGTTCCT
CGACTCGCTCTCGCGCGTCGTCGCTGCCCTCGCCGCCTCGCCCGCCTACA
CGGGCGCCCGTTCTGCCGAGGAGATCCGCGAGCGGATCCTCTGCAAGGCG
AGCCGCACCACCAGCGGTTCCGACTCGTACTTCACTGTGGAACGTCTCGT
CGGCAGCGACCACTTCCTGTTAAAGCCGCGCGACGATGGGCCGCAGGCCC
CAATCCGCGTCGAGGTGTATCTAGTGGACAATGCGATCCACAGCGTGGTG
ACGTGCGCCAACCGCTACGGGCTGTACGACCTCGGAGAGATCGATGACGC
CTCCCAGGTCAGGGAGAGAAGGGGAGGAAAAGAAGGCGGGAAACAGGACA
TGAAAAGATGGCGGTAGAAAGAGGAGATAGGAAAAGAACGGCCCCATTTG
CCTGTTGTTTGTCTGCTACAGCAGCGAACAGCATTTCAGAGGCCTCCGAG
ACGCGCATCCGTTCCTTTTGGGGGGTTGAAAAAGATTTTCAACACGCGAA
CCGCCCATCACAGGTGTGTTCAAGGCCGCGGCTGCGCATGCGTCGCAAGC
CGGAATCTAGTCCGTACTAAACAGCCCCTGATCGCTGCCACCGCCGCCGT
CGCCCTTTTTCTTGCTGCCGCCGCTGCTGCTGTCTTCATTGCTGCCACCG
CCGCCGCCGCCGCGGCCGCCACTTCTGCCGCCGTTCGTGCCCCTGCTACC
GGCGCTACCATCCTGTCGTTGCTGTTGTCGCCGCCGCCGCCGCCGCCGCC
GCCGCCCCCGCCGCTCCGCTGTTGTCCCTTCCCTACGCCCCCTCGCTAGA
GCATGCGACTGCGGAAGCCGACGGTATGGCTGGAGCTCGACACGACCGTT
GTGGAGAAGACGGATTACCGCACCAACCGCAACGTCCGCTACCTTCGTAT
CGAGGCCCCCGAGGCCGAGGCCGCGCCACAGCACGCCATACCAGGTCCGT
TGCTGCTCCGGTACGGTATCATAGTGTGACCCGTTTTGGACGCGCTTTCT
TCTTTTTGTGGCGAGTGCTGAAGCTGCGCAGAGGCGCCCATTCTCCATGT
CGTTTTGCGGGTTAACAACCGACCATTCTTTTCTCTTCGGCTTCGATCTG
AATGTCATGCCTGCCGTCTTTTTGGTCCGTTTGAAAGGAGGGAGGGAAGA
ACGCCCTTGTGCAGCGTCTGAGACTGCTGCAAGTCCCCGCTGTGAGCTGC
TGTCCCTCACCTATTGGCCGCCTTTCGCGCTTCGCTCCACCGAGCGGGGT
CCAGCGGGCACCGGAGAACGCAGTACCGCTGGCGTCGGCGGCAGCGGCCT
GATTCGGCCGTTCGGTGGCTCGCCCGAATCGTCGTCGGCAGACCCCCACC
GCGTCGTCCGCGCCAGCGCCGGCCGGGACCGCGGCACCGGCAGCGCTGGC
GGCGGTGGCGGCGGGTGGGGCAATGGGGGCAACGGTGTGGGCGAAGGGCT
GGCGCAATTCCGGCCGATGGCGCTTTTCGGCGGCGGCGGCGACTTCGCCA
GAGATCGGGATCGCCGGGTGCCATGACACACATCTACTCGTCAATGATTT
TGGATCTGAGAGGTGCCGCCCACGTGTCGTGCGGATTCGGCAGAATTTTT
TCTTCTGGAGGCTAGCGGGGCGAAAAGCCTGGACGGACCTTTATAAAGGA
ACCCTTTGTCCCGCTTGGAGCGGAACGGAGCGGGCAGCAGCGGCCGCGCC
GGAAGCTTCACAAAAAAGGTGCGATGGTTGTCGTTTCCCTTCCTGACCTT
GTTACGAACGGGTATACATACCGAGATTTTTGAAATGATGCAGACTGTTT
AATAACAATACAATTCACTTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1535:2536..4407-

>mRNA_P-wetherbeei_contig1535.2.1 ID=mRNA_P-wetherbeei_contig1535.2.1|Name=mRNA_P-wetherbeei_contig1535.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=732bp|location=Sequence derived from alignment at P-wetherbeei_contig1535:2536..4407- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCCTCGACTCGCTCTCGCGCGTCGTCGCTGCCCTCGCCGCCTCGCC
CGCCTACACGGGCGCCCGTTCTGCCGAGGAGATCCGCGAGCGGATCCTCT
GCAAGGCGAGCCGCACCACCAGCGGTTCCGACTCGTACTTCACTGTGGAA
CGTCTCGTCGGCAGCGACCACTTCCTGTTAAAGCCGCGCGACGATGGGCC
GCAGGCCCCAATCCGCGTCGAGGTGTATCTAGTGGACAATGCGATCCACA
GCGTGGTGACGTGCGCCAACCGCTACGGGCTGTACGACCTCGGAGAGATC
GATGACGCCTCCCAGAGCATGCGACTGCGGAAGCCGACGGTATGGCTGGA
GCTCGACACGACCGTTGTGGAGAAGACGGATTACCGCACCAACCGCAACG
TCCGCTACCTTCGTATCGAGGCCCCCGAGGCCGAGGCCGCGCCACAGCAC
GCCATACCAGCGGGCACCGGAGAACGCAGTACCGCTGGCGTCGGCGGCAG
CGGCCTGATTCGGCCGTTCGGTGGCTCGCCCGAATCGTCGTCGGCAGACC
CCCACCGCGTCGTCCGCGCCAGCGCCGGCCGGGACCGCGGCACCGGCAGC
GCTGGCGGCGGTGGCGGCGGGTGGGGCAATGGGGGCAACGGTGTGGGCGA
AGGGCTGGCGCAATTCCGGCCGATGGCGCTTTTCGGCGGCGGCGGCGACT
TCGCCAGAGATCGGGATCGCCGGGTGCCATGA
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