mRNA_P-wetherbeei_contig15300.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15300.1.1
Unique NamemRNA_P-wetherbeei_contig15300.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15300.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15300contigP-wetherbeei_contig15300:3..1530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1433
Hectar predicted targeting categoryother localisation
Exons2
Cds size1431
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186051.9471319-CDS-P-wetherbeei_contig15300:2..4821683186051.9471319-CDS-P-wetherbeei_contig15300:2..482Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15300 3..482 +
1683186051.9596138-CDS-P-wetherbeei_contig15300:578..15291683186051.9596138-CDS-P-wetherbeei_contig15300:578..1529Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15300 579..1529 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15300.1.1prot_P-wetherbeei_contig15300.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15300 3..1529 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15300.1.1

>prot_P-wetherbeei_contig15300.1.1 ID=prot_P-wetherbeei_contig15300.1.1|Name=mRNA_P-wetherbeei_contig15300.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=477bp
PAGAAAAAAAAAAAGAAAGSSQADGSDADSQKSGVALGSAGTPDGAGWRG
ALAGGVAAEDTRAAAAVAAAAAAVEVGAIGRGILSPGDEEMVETLEYLMA
FSRDAGSSQSSSGSPTAVQLGEHSLPPPEKGVARRGEDDARTAAAGDDSP
CGAGARLFTQAEVDLIRATQPAHEEDMFQVHLGRSAAARGVVPFLSSDSE
DDSDMEGGGNGGVGGGDGDDGCGSGVGSSGGGGIDVTGAVAASQDHDVAP
FPSSLRANGTARDNGASNAMDAAMRGGRELRGLAADGTNEAMHWEVGSGS
AGRTDADRIGVTDDGIAERNGGNSAFGGRQGMPREWADILASQLEVEESS
QADAEAIHASQIVADPAAAAKTSDAHEEFHRGEANGGDSEVNTSARGARG
NTARESSGGDGDNGGGITTAKEMEDTDLYAECEEDAVGSDNTAAEGDDDS
RHDESDESHGSGLRLRGDAPGSPSHTW
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mRNA from alignment at P-wetherbeei_contig15300:3..1530+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15300.1.1 ID=mRNA_P-wetherbeei_contig15300.1.1|Name=mRNA_P-wetherbeei_contig15300.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1528bp|location=Sequence derived from alignment at P-wetherbeei_contig15300:3..1530+ (Phaeothamnion wetherbeei SAG_119_79)
CCGGCGGGAGCCGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGGTGCAGC
GGCCGGAAGCTCCCAAGCCGACGGCTCGGACGCTGACTCACAAAAAAGTG
GTGTGGCGTTGGGGTCTGCCGGTACGCCCGACGGTGCAGGATGGAGGGGT
GCTTTGGCAGGCGGTGTTGCTGCAGAGGACACTCGGGCGGCGGCGGCTGT
GGCAGCGGCGGCGGCGGCGGTAGAGGTTGGAGCGATTGGGCGCGGCATCC
TCAGCCCGGGCGACGAGGAGATGGTGGAGACCCTCGAGTACCTGATGGCG
TTTTCTCGTGACGCCGGGTCGTCGCAGTCGTCCAGCGGCTCTCCAACCGC
CGTCCAGCTCGGCGAGCATTCGCTGCCGCCACCGGAGAAAGGTGTGGCTA
GACGTGGCGAGGATGACGCCCGAACGGCTGCCGCCGGAGATGACAGCCCA
TGCGGAGCGGGAGCCCGGCTCTTCACACAGGTAAGGTTGCTTTTGGGGAA
CGAAACCATGTTGCCTGGTGCGTAAGACTTCTGATGTTTCTGCGACTTTG
CCCCCTTTTCGTTGCCGCCGGTACAGGCGGAGGTGGATCTCATCCGTGCC
ACGCAGCCAGCACACGAAGAAGACATGTTCCAGGTGCATTTAGGGCGCTC
GGCTGCTGCACGCGGCGTGGTGCCGTTCTTATCGTCAGACTCGGAGGACG
ACTCGGACATGGAAGGCGGAGGTAACGGCGGCGTCGGCGGTGGTGATGGC
GACGACGGCTGTGGCAGCGGCGTCGGCAGCAGCGGTGGCGGCGGCATTGA
TGTCACCGGCGCTGTCGCAGCCTCTCAAGATCACGACGTCGCGCCTTTTC
CAAGCAGCCTTCGTGCAAATGGAACGGCGCGGGACAACGGCGCATCAAAC
GCGATGGACGCCGCCATGAGAGGAGGTCGGGAGCTGCGCGGGCTTGCAGC
AGATGGAACCAATGAGGCAATGCATTGGGAAGTGGGAAGCGGCAGCGCTG
GAAGGACCGACGCCGATCGGATCGGGGTCACGGACGACGGCATTGCTGAA
AGAAATGGCGGAAACAGCGCTTTCGGCGGCCGCCAGGGTATGCCGCGGGA
ATGGGCGGACATTCTGGCATCCCAGCTCGAAGTTGAGGAGAGCAGTCAAG
CGGATGCGGAAGCAATCCATGCTTCCCAAATAGTGGCAGATCCCGCAGCA
GCAGCAAAGACATCAGACGCACACGAAGAGTTTCATCGTGGCGAGGCGAA
CGGCGGGGATTCTGAGGTCAATACAAGCGCAAGGGGAGCACGTGGCAATA
CGGCGAGGGAATCATCGGGCGGGGATGGTGATAACGGCGGCGGTATCACA
ACAGCGAAGGAAATGGAGGACACAGACTTGTATGCAGAATGCGAAGAAGA
TGCGGTGGGCAGTGACAACACGGCTGCCGAGGGCGACGATGACAGTCGAC
ACGACGAATCCGACGAGTCGCATGGCAGCGGCCTGCGGCTGCGAGGAGAT
GCGCCAGGCTCGCCGTCGCACACATGGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15300:3..1530+

>mRNA_P-wetherbeei_contig15300.1.1 ID=mRNA_P-wetherbeei_contig15300.1.1|Name=mRNA_P-wetherbeei_contig15300.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1431bp|location=Sequence derived from alignment at P-wetherbeei_contig15300:3..1530+ (Phaeothamnion wetherbeei SAG_119_79)
CCGGCGGGAGCCGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGGTGCAGC
GGCCGGAAGCTCCCAAGCCGACGGCTCGGACGCTGACTCACAAAAAAGTG
GTGTGGCGTTGGGGTCTGCCGGTACGCCCGACGGTGCAGGATGGAGGGGT
GCTTTGGCAGGCGGTGTTGCTGCAGAGGACACTCGGGCGGCGGCGGCTGT
GGCAGCGGCGGCGGCGGCGGTAGAGGTTGGAGCGATTGGGCGCGGCATCC
TCAGCCCGGGCGACGAGGAGATGGTGGAGACCCTCGAGTACCTGATGGCG
TTTTCTCGTGACGCCGGGTCGTCGCAGTCGTCCAGCGGCTCTCCAACCGC
CGTCCAGCTCGGCGAGCATTCGCTGCCGCCACCGGAGAAAGGTGTGGCTA
GACGTGGCGAGGATGACGCCCGAACGGCTGCCGCCGGAGATGACAGCCCA
TGCGGAGCGGGAGCCCGGCTCTTCACACAGGCGGAGGTGGATCTCATCCG
TGCCACGCAGCCAGCACACGAAGAAGACATGTTCCAGGTGCATTTAGGGC
GCTCGGCTGCTGCACGCGGCGTGGTGCCGTTCTTATCGTCAGACTCGGAG
GACGACTCGGACATGGAAGGCGGAGGTAACGGCGGCGTCGGCGGTGGTGA
TGGCGACGACGGCTGTGGCAGCGGCGTCGGCAGCAGCGGTGGCGGCGGCA
TTGATGTCACCGGCGCTGTCGCAGCCTCTCAAGATCACGACGTCGCGCCT
TTTCCAAGCAGCCTTCGTGCAAATGGAACGGCGCGGGACAACGGCGCATC
AAACGCGATGGACGCCGCCATGAGAGGAGGTCGGGAGCTGCGCGGGCTTG
CAGCAGATGGAACCAATGAGGCAATGCATTGGGAAGTGGGAAGCGGCAGC
GCTGGAAGGACCGACGCCGATCGGATCGGGGTCACGGACGACGGCATTGC
TGAAAGAAATGGCGGAAACAGCGCTTTCGGCGGCCGCCAGGGTATGCCGC
GGGAATGGGCGGACATTCTGGCATCCCAGCTCGAAGTTGAGGAGAGCAGT
CAAGCGGATGCGGAAGCAATCCATGCTTCCCAAATAGTGGCAGATCCCGC
AGCAGCAGCAAAGACATCAGACGCACACGAAGAGTTTCATCGTGGCGAGG
CGAACGGCGGGGATTCTGAGGTCAATACAAGCGCAAGGGGAGCACGTGGC
AATACGGCGAGGGAATCATCGGGCGGGGATGGTGATAACGGCGGCGGTAT
CACAACAGCGAAGGAAATGGAGGACACAGACTTGTATGCAGAATGCGAAG
AAGATGCGGTGGGCAGTGACAACACGGCTGCCGAGGGCGACGATGACAGT
CGACACGACGAATCCGACGAGTCGCATGGCAGCGGCCTGCGGCTGCGAGG
AGATGCGCCAGGCTCGCCGTCGCACACATGG
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