mRNA_P-wetherbeei_contig15271.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15271.1.1
Unique NamemRNA_P-wetherbeei_contig15271.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15271.1.1 vs. uniprot
Match: A0A835ZC71_9STRA (Transmembrane 9 superfamily member n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC71_9STRA)

HSP 1 Score: 243 bits (619), Expect = 1.650e-74
Identity = 121/149 (81.21%), Postives = 132/149 (88.59%), Query Frame = 1
Query:    1 VIFTYDVVWEQSDVTWANRWDTYLKGNPEDEIHYFSIVNSLMITLLLTGVVAMIMLRTLRKDITSYNEVQTLEEAQEESGWKLVHGDVFRPPETSPMLLAVAAGSGVQVFCMAISAIGFAFMGFLSPANRGGMLTALLVLFVLFGSTAG 447
            VIFTYDV WE+SD+ WA+RWD Y+ G+PEDEIHYFS+VNSLMITL LTGVVAMIMLRTL KDI SYNE QTLEEAQEESGWKLVHGDVFRPP  SPM+L+V AG+GVQVF M +S IGFAFMGFLSPANRGGMLT +LVLFVL GS AG
Sbjct:  237 VIFTYDVRWERSDIEWAHRWDAYMLGDPEDEIHYFSVVNSLMITLFLTGVVAMIMLRTLHKDIASYNEAQTLEEAQEESGWKLVHGDVFRPPAFSPMVLSVLAGTGVQVFVMTLSTIGFAFMGFLSPANRGGMLTTVLVLFVLSGSAAG 385          
BLAST of mRNA_P-wetherbeei_contig15271.1.1 vs. uniprot
Match: A0A7S2BI44_9STRA (Transmembrane 9 superfamily member n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BI44_9STRA)

HSP 1 Score: 237 bits (605), Expect = 2.230e-74
Identity = 119/149 (79.87%), Postives = 132/149 (88.59%), Query Frame = 1
Query:    1 VIFTYDVVWEQSDVTWANRWDTYLKGNPEDEIHYFSIVNSLMITLLLTGVVAMIMLRTLRKDITSYNEVQTLEEAQEESGWKLVHGDVFRPPETSPMLLAVAAGSGVQVFCMAISAIGFAFMGFLSPANRGGMLTALLVLFVLFGSTAG 447
            VI+TYDV W  SD+TWA+RWD YLKGNP+DEIHYFSIVNSLMI L LTGVVAMIMLRTLRKDIT+YNE+QTLEEAQEESGWKLVHGDVFR P  SPMLL+V AG+GVQVF MA+S + FA +GFLSPANRGG+LTALL+LFV  GS AG
Sbjct:   45 VIYTYDVKWVPSDITWAHRWDVYLKGNPDDEIHYFSIVNSLMIVLFLTGVVAMIMLRTLRKDITTYNEMQTLEEAQEESGWKLVHGDVFRAPAFSPMLLSVLAGTGVQVFAMAMSTMTFALLGFLSPANRGGLLTALLLLFVFMGSFAG 193          
BLAST of mRNA_P-wetherbeei_contig15271.1.1 vs. uniprot
Match: A0A7S2WWC3_9STRA (Transmembrane 9 superfamily member (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WWC3_9STRA)

HSP 1 Score: 233 bits (595), Expect = 3.730e-73
Identity = 115/149 (77.18%), Postives = 132/149 (88.59%), Query Frame = 1
Query:    1 VIFTYDVVWEQSDVTWANRWDTYLKGNPEDEIHYFSIVNSLMITLLLTGVVAMIMLRTLRKDITSYNEVQTLEEAQEESGWKLVHGDVFRPPETSPMLLAVAAGSGVQVFCMAISAIGFAFMGFLSPANRGGMLTALLVLFVLFGSTAG 447
            V++TYDV W  SD+TW+NRWD YL GNP+DEIHYFSIVNSLMI L LTGVVAMIMLRTLR+DI++YNE+QTLEEAQEESGWKLVHGDVFR PE SPMLL+V AG+GVQ+F MA+S + FA +GFLSPANRGG+LTALL+LFV  GS AG
Sbjct:  251 VVYTYDVKWIPSDLTWSNRWDVYLLGNPDDEIHYFSIVNSLMIVLFLTGVVAMIMLRTLRRDISTYNEMQTLEEAQEESGWKLVHGDVFRAPECSPMLLSVLAGTGVQIFAMALSTMMFAMLGFLSPANRGGLLTALLLLFVFMGSFAG 399          
BLAST of mRNA_P-wetherbeei_contig15271.1.1 vs. uniprot
Match: A0A482SF39_9ARCH (Transmembrane 9 family protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SF39_9ARCH)

HSP 1 Score: 228 bits (581), Expect = 5.670e-72
Identity = 112/149 (75.17%), Postives = 126/149 (84.56%), Query Frame = 1
Query:    1 VIFTYDVVWEQSDVTWANRWDTYLKGNPEDEIHYFSIVNSLMITLLLTGVVAMIMLRTLRKDITSYNEVQTLEEAQEESGWKLVHGDVFRPPETSPMLLAVAAGSGVQVFCMAISAIGFAFMGFLSPANRGGMLTALLVLFVLFGSTAG 447
            +I+TYDV WE+SD+ W NRWD YLKGNPEDEIHYFSIVNSLMI L L+GVVAMIMLRTL KDI+SYNE+QTLEEAQEESGWKLVHGDVFRPP TSP+LL+V AGSGVQ+ CM I  +  A  G  SPANRGG+LT LL+L+V  GS AG
Sbjct:    1 MIYTYDVKWERSDLPWTNRWDVYLKGNPEDEIHYFSIVNSLMIVLFLSGVVAMIMLRTLHKDISSYNEMQTLEEAQEESGWKLVHGDVFRPPSTSPLLLSVVAGSGVQILCMTICTMVCALFGLTSPANRGGLLTTLLLLYVFMGSFAG 149          
BLAST of mRNA_P-wetherbeei_contig15271.1.1 vs. uniprot
Match: A0A7S2WW63_9STRA (Transmembrane 9 superfamily member n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW63_9STRA)

HSP 1 Score: 233 bits (595), Expect = 7.580e-71
Identity = 115/149 (77.18%), Postives = 132/149 (88.59%), Query Frame = 1
Query:    1 VIFTYDVVWEQSDVTWANRWDTYLKGNPEDEIHYFSIVNSLMITLLLTGVVAMIMLRTLRKDITSYNEVQTLEEAQEESGWKLVHGDVFRPPETSPMLLAVAAGSGVQVFCMAISAIGFAFMGFLSPANRGGMLTALLVLFVLFGSTAG 447
            V++TYDV W  SD+TW+NRWD YL GNP+DEIHYFSIVNSLMI L LTGVVAMIMLRTLR+DI++YNE+QTLEEAQEESGWKLVHGDVFR PE SPMLL+V AG+GVQ+F MA+S + FA +GFLSPANRGG+LTALL+LFV  GS AG
Sbjct:  251 VVYTYDVKWIPSDLTWSNRWDVYLLGNPDDEIHYFSIVNSLMIVLFLTGVVAMIMLRTLRRDISTYNEMQTLEEAQEESGWKLVHGDVFRAPECSPMLLSVLAGTGVQIFAMALSTMMFAMLGFLSPANRGGLLTALLLLFVFMGSFAG 399          
BLAST of mRNA_P-wetherbeei_contig15271.1.1 vs. uniprot
Match: W7U8J6_9STRA (Transmembrane 9 superfamily member n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U8J6_9STRA)

HSP 1 Score: 231 bits (589), Expect = 4.610e-70
Identity = 112/149 (75.17%), Postives = 131/149 (87.92%), Query Frame = 1
Query:    1 VIFTYDVVWEQSDVTWANRWDTYLKGNPEDEIHYFSIVNSLMITLLLTGVVAMIMLRTLRKDITSYNEVQTLEEAQEESGWKLVHGDVFRPPETSPMLLAVAAGSGVQVFCMAISAIGFAFMGFLSPANRGGMLTALLVLFVLFGSTAG 447
            VIFTYDV W++SDV W++RWD Y  GNP+DEIHYFSIVNSLMI L LTGVVAMIMLRTLR+DI++YNE+QTLEEAQEESGWKLVHGDVFRPP+TSPMLLAV AGSG Q+  M+ + + FA +GF+SPANRGG+LT+LL+LFV  GS AG
Sbjct:  239 VIFTYDVEWKESDVPWSSRWDVYFSGNPDDEIHYFSIVNSLMIALFLTGVVAMIMLRTLRQDISNYNEMQTLEEAQEESGWKLVHGDVFRPPQTSPMLLAVLAGSGAQLLAMSTAILTFALLGFMSPANRGGLLTSLLLLFVFMGSVAG 387          
BLAST of mRNA_P-wetherbeei_contig15271.1.1 vs. uniprot
Match: D7FKX0_ECTSI (Transmembrane 9 superfamily member n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKX0_ECTSI)

HSP 1 Score: 230 bits (587), Expect = 1.120e-69
Identity = 116/150 (77.33%), Postives = 131/150 (87.33%), Query Frame = 1
Query:    1 VIFTYDVVWE-QSDVTWANRWDTYLKGNPEDEIHYFSIVNSLMITLLLTGVVAMIMLRTLRKDITSYNEVQTLEEAQEESGWKLVHGDVFRPPETSPMLLAVAAGSGVQVFCMAISAIGFAFMGFLSPANRGGMLTALLVLFVLFGSTAG 447
            VIFTYDV WE  +  TW+ RW+ YLKGNPE+EIHYFSIVNSLMITL LTGVVAMIMLRTLRKDIT+YNE+Q++E+AQEESGWKLVHGDVFRPP  SPMLL++  G+G+QV  M +S I FAF+GFLSPANRGGMLTALLVLFVL GS AG
Sbjct:  253 VIFTYDVEWELDAKTTWSRRWENYLKGNPENEIHYFSIVNSLMITLFLTGVVAMIMLRTLRKDITNYNEMQSVEDAQEESGWKLVHGDVFRPPSFSPMLLSIMCGTGMQVLAMTLSTITFAFLGFLSPANRGGMLTALLVLFVLMGSFAG 402          
BLAST of mRNA_P-wetherbeei_contig15271.1.1 vs. uniprot
Match: A0A7S2B0N8_9STRA (Transmembrane 9 superfamily member n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B0N8_9STRA)

HSP 1 Score: 228 bits (581), Expect = 9.020e-69
Identity = 113/149 (75.84%), Postives = 130/149 (87.25%), Query Frame = 1
Query:    1 VIFTYDVVWEQSDVTWANRWDTYLKGNPEDEIHYFSIVNSLMITLLLTGVVAMIMLRTLRKDITSYNEVQTLEEAQEESGWKLVHGDVFRPPETSPMLLAVAAGSGVQVFCMAISAIGFAFMGFLSPANRGGMLTALLVLFVLFGSTAG 447
            VI+TYDV W  S ++W++RWD YLKGNP+DEIHYFSIVNSLMI L LTGVVAMIMLRTLRKDIT+YNE+QT+EEAQEESGWKLVHGDVFR PE SPMLL+V AG+GVQ+F M +S + FA +GFLSPANRGG+LTALL+LFV  G  AG
Sbjct:  253 VIYTYDVKWVPSAISWSHRWDIYLKGNPDDEIHYFSIVNSLMIVLFLTGVVAMIMLRTLRKDITTYNEMQTVEEAQEESGWKLVHGDVFRAPEFSPMLLSVFAGTGVQIFAMTLSTMTFALLGFLSPANRGGLLTALLLLFVFMGFFAG 401          
BLAST of mRNA_P-wetherbeei_contig15271.1.1 vs. uniprot
Match: A0A7S0ST66_9STRA (Transmembrane 9 superfamily member (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0ST66_9STRA)

HSP 1 Score: 211 bits (537), Expect = 1.900e-63
Identity = 103/149 (69.13%), Postives = 119/149 (79.87%), Query Frame = 1
Query:    1 VIFTYDVVWEQSDVTWANRWDTYLKGNPEDEIHYFSIVNSLMITLLLTGVVAMIMLRTLRKDITSYNEVQTLEEAQEESGWKLVHGDVFRPPETSPMLLAVAAGSGVQVFCMAISAIGFAFMGFLSPANRGGMLTALLVLFVLFGSTAG 447
            VIFTYDV+WE+SD+ WANRWD YLK NP DEIHYF+IVNSLM+ L L+ VVAMI LRTL KDI+SYNE+QTLEEAQEESGWKLVHGDVFRPP  SPMLL+V  GSG Q+  M +  +  A  G  SP+NRG +LT LL+L+V  GS AG
Sbjct:  208 VIFTYDVIWERSDIKWANRWDIYLKSNPNDEIHYFAIVNSLMVVLFLSAVVAMIFLRTLHKDISSYNEMQTLEEAQEESGWKLVHGDVFRPPAFSPMLLSVLVGSGAQIIAMTLCTMVCALFGLTSPSNRGALLTTLLLLYVFMGSFAG 356          
BLAST of mRNA_P-wetherbeei_contig15271.1.1 vs. uniprot
Match: A0A7S2RH92_9STRA (Transmembrane 9 superfamily member n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RH92_9STRA)

HSP 1 Score: 203 bits (516), Expect = 1.970e-59
Identity = 99/149 (66.44%), Postives = 121/149 (81.21%), Query Frame = 1
Query:    1 VIFTYDVVWEQSDVTWANRWDTYLKGNPEDEIHYFSIVNSLMITLLLTGVVAMIMLRTLRKDITSYNEVQTLEEAQEESGWKLVHGDVFRPPETSPMLLAVAAGSGVQVFCMAISAIGFAFMGFLSPANRGGMLTALLVLFVLFGSTAG 447
            V +TY V W +SD+ WA+RWD YL G+P+D+IH++SI+NSLMI L LTG+VAMIM+RTL KDI  YNE QT EEAQEE GWKLVHGDVFRPP  SPMLL+V  GSGVQ+  M I+ + FA +GFLSPANRGG++TA+++LFVL G  AG
Sbjct:  230 VTWTYSVEWIESDIPWASRWDIYLNGSPDDKIHWYSIINSLMIVLFLTGMVAMIMMRTLHKDIARYNEEQTSEEAQEEFGWKLVHGDVFRPPIHSPMLLSVLCGSGVQILAMTITLMVFALLGFLSPANRGGLMTAMILLFVLMGYFAG 378          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15271.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZC71_9STRA1.650e-7481.21Transmembrane 9 superfamily member n=1 Tax=Tribone... [more]
A0A7S2BI44_9STRA2.230e-7479.87Transmembrane 9 superfamily member n=1 Tax=Florenc... [more]
A0A7S2WWC3_9STRA3.730e-7377.18Transmembrane 9 superfamily member (Fragment) n=1 ... [more]
A0A482SF39_9ARCH5.670e-7275.17Transmembrane 9 family protein n=1 Tax=archaeon Ta... [more]
A0A7S2WW63_9STRA7.580e-7177.18Transmembrane 9 superfamily member n=1 Tax=Rhizoch... [more]
W7U8J6_9STRA4.610e-7075.17Transmembrane 9 superfamily member n=3 Tax=Monodop... [more]
D7FKX0_ECTSI1.120e-6977.33Transmembrane 9 superfamily member n=2 Tax=Ectocar... [more]
A0A7S2B0N8_9STRA9.020e-6975.84Transmembrane 9 superfamily member n=1 Tax=Dictyoc... [more]
A0A7S0ST66_9STRA1.900e-6369.13Transmembrane 9 superfamily member (Fragment) n=1 ... [more]
A0A7S2RH92_9STRA1.970e-5966.44Transmembrane 9 superfamily member n=1 Tax=labyrin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15271contigP-wetherbeei_contig15271:300..1092 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FKX0
PFAMsEMP70
Model size447
Max annot lvl2759|Eukaryota
KEGG koko:K17086
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.83e-70
EggNOG OGsKOG1278@1|root,KOG1278@2759|Eukaryota
Descriptionpositive regulation of protein exit from endoplasmic reticulum
Cds size447
COG categoryS
BRITEko00000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186050.555164-CDS-P-wetherbeei_contig15271:299..5031683186050.555164-CDS-P-wetherbeei_contig15271:299..503Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15271 300..503 +
1683186050.565055-CDS-P-wetherbeei_contig15271:849..10921683186050.565055-CDS-P-wetherbeei_contig15271:849..1092Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15271 850..1092 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15271.1.1prot_P-wetherbeei_contig15271.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15271 300..1092 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15271.1.1

>prot_P-wetherbeei_contig15271.1.1 ID=prot_P-wetherbeei_contig15271.1.1|Name=mRNA_P-wetherbeei_contig15271.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=149bp
VIFTYDVVWEQSDVTWANRWDTYLKGNPEDEIHYFSIVNSLMITLLLTGV
VAMIMLRTLRKDITSYNEVQTLEEAQEESGWKLVHGDVFRPPETSPMLLA
VAAGSGVQVFCMAISAIGFAFMGFLSPANRGGMLTALLVLFVLFGSTAG
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mRNA from alignment at P-wetherbeei_contig15271:300..1092+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15271.1.1 ID=mRNA_P-wetherbeei_contig15271.1.1|Name=mRNA_P-wetherbeei_contig15271.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=793bp|location=Sequence derived from alignment at P-wetherbeei_contig15271:300..1092+ (Phaeothamnion wetherbeei SAG_119_79)
GTGATCTTCACGTACGACGTGGTGTGGGAGCAGAGCGATGTGACATGGGC CAACCGGTGGGACACCTACCTCAAGGGCAACCCCGAGGACGAGATCCACT ACTTCTCCATCGTCAATTCGCTCATGATCACGCTGCTGCTCACGGGTGTG GTGGCCATGATCATGCTGCGCACCCTCCGCAAGGACATCACCTCGTACAA TGAGGTCCGTGTCCGTCGTTCGGGTTCCTTTCTGCTTCCCATTCCGTCTC CGTTTGGTTTGCTTTGGCGTGTTTCATTTTGGTTCGCTCCGGCTCATTCG GTGTTCGGTTGAGCGTTTGGTGGTTGGGCGGTTTCGAGGTCGTTTTCCAG TTTGGTTCCCTTGGTATAAGGGAGGAGGCTCGCTGCCGAAGCCGATCGTC CTGCCTCTTGGATACGACTTTTCGATGCTGCCTGTCTTACCCGGTGCTGG CTGCCTGCTGCTCGAAACTTAACCCCTGAGAGACCGCTTTGGCTCAACAG ACCCGAAAACCCGATCCGAATCGATTCCGACACCGACGACGGCGACACAG GTGCAAACGCTGGAGGAGGCGCAGGAGGAGAGCGGGTGGAAGCTGGTGCA CGGGGATGTGTTTCGGCCGCCGGAAACGTCGCCGATGCTGCTGGCGGTGG CGGCCGGGTCGGGCGTGCAGGTGTTCTGCATGGCAATCAGCGCCATCGGC TTCGCCTTCATGGGTTTCCTGAGCCCGGCCAACCGCGGCGGCATGCTGAC GGCACTGCTCGTCCTCTTCGTCCTCTTCGGCTCCACCGCGGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15271:300..1092+

>mRNA_P-wetherbeei_contig15271.1.1 ID=mRNA_P-wetherbeei_contig15271.1.1|Name=mRNA_P-wetherbeei_contig15271.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig15271:300..1092+ (Phaeothamnion wetherbeei SAG_119_79)
GTGATCTTCACGTACGACGTGGTGTGGGAGCAGAGCGATGTGACATGGGC
CAACCGGTGGGACACCTACCTCAAGGGCAACCCCGAGGACGAGATCCACT
ACTTCTCCATCGTCAATTCGCTCATGATCACGCTGCTGCTCACGGGTGTG
GTGGCCATGATCATGCTGCGCACCCTCCGCAAGGACATCACCTCGTACAA
TGAGGTGCAAACGCTGGAGGAGGCGCAGGAGGAGAGCGGGTGGAAGCTGG
TGCACGGGGATGTGTTTCGGCCGCCGGAAACGTCGCCGATGCTGCTGGCG
GTGGCGGCCGGGTCGGGCGTGCAGGTGTTCTGCATGGCAATCAGCGCCAT
CGGCTTCGCCTTCATGGGTTTCCTGAGCCCGGCCAACCGCGGCGGCATGC
TGACGGCACTGCTCGTCCTCTTCGTCCTCTTCGGCTCCACCGCGGGG
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