mRNA_P-wetherbeei_contig15269.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15269.1.1
Unique NamemRNA_P-wetherbeei_contig15269.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15269.1.1 vs. uniprot
Match: A0A835YQV2_9STRA (Nucleoside diphosphate kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQV2_9STRA)

HSP 1 Score: 139 bits (351), Expect = 5.160e-37
Identity = 77/152 (50.66%), Postives = 90/152 (59.21%), Query Frame = 1
Query:    1 QGYEVTALEMFHLDRSSAAEFLEVYKGVHPHYNELVEELVTSPCVAMELRLPEGAAAATAAVQASDAGRRTAADAVDPAAAAXXXXXXXXXXTVVAAFRQTAGPWDVEAARVLRPRSLRARYGADNVRCAVHCTDLPEDGPLESRFFFELLQ 456
            QGYEVTAL+  HLDR SA EF EVY+G  P Y ELV+ ++TSPC+AME+R             A DA                           VA FRQTAGPWDVE A+ LRP SLRA +G DNVR  VHCT+LPEDG  E ++FFE+LQ
Sbjct:  265 QGYEVTALDTVHLDRVSATEFFEVYQGAVPEYKELVDHMITSPCIAMEVR-------------AEDA---------------------------VATFRQTAGPWDVEMAKELRPGSLRALFGRDNVRSGVHCTELPEDGVAECQYFFEVLQ 376          
BLAST of mRNA_P-wetherbeei_contig15269.1.1 vs. uniprot
Match: A0A7S3YA09_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YA09_HETAK)

HSP 1 Score: 135 bits (340), Expect = 8.980e-36
Identity = 78/154 (50.65%), Postives = 90/154 (58.44%), Query Frame = 1
Query:    1 QGYEVTALEMFHLDRSSAAEFLEVYKGVHPHYNELVEELVTSPCVAMELRLPEGAAAATAAVQASDAGRRTAADAVDPAAAAXXXXXXXXXXTVVAAFRQTAGPWDVEAARVLRPRSLRARYGADNVRCAVHCTDLPEDGPLESRFFFELLQHQ 462
            QGYEV+ALEMF L+R  A EFLEVYKGV P + + V++L    CVAME+R                        A DP                VA FRQTAGPWDVE AR LRP +LRA+YG D VR AVHCTDLPEDG  E ++FF+LLQ Q
Sbjct:  218 QGYEVSALEMFTLERPQAEEFLEVYKGVLPEWADAVDQLCAGACVAMEVR------------------------AEDP----------------VATFRQTAGPWDVEMARDLRPATLRAKYGEDRVRNAVHCTDLPEDGVPECQYFFDLLQRQ 331          
BLAST of mRNA_P-wetherbeei_contig15269.1.1 vs. uniprot
Match: K3W9K3_GLOUD (DM10 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W9K3_GLOUD)

HSP 1 Score: 134 bits (338), Expect = 3.780e-35
Identity = 72/148 (48.65%), Postives = 90/148 (60.81%), Query Frame = 1
Query:   10 EVTALEMFHLDRSSAAEFLEVYKGVHPHYNELVEELVTSPCVAMELRLPEGAAAATAAVQASDAGRRTAADAVDPAAAAXXXXXXXXXXTVVAAFRQTAGPWDVEAARVLRPRSLRARYGADNVRCAVHCTDLPEDGPLESRFFFELL 453
            E+TA+EMF LDR++AAEFLEVY+GV PH+NE V++  T PC+AMEL                  GR                       +VVA FR+ AGPWDVE A+ LRP ++RARYG D VR AVHCTDL +DG LES +FF++L
Sbjct:  252 EITAMEMFTLDRTTAAEFLEVYEGVIPHFNETVDQFTTGPCIAMEL-----------------VGRNA--------------------ESVVARFRENAGPWDVEMAKELRPHTIRARYGHDRVRNAVHCTDLADDGMLESEYFFDIL 362          
BLAST of mRNA_P-wetherbeei_contig15269.1.1 vs. uniprot
Match: A0A7S2XZY6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZY6_9STRA)

HSP 1 Score: 129 bits (323), Expect = 2.160e-34
Identity = 69/152 (45.39%), Postives = 88/152 (57.89%), Query Frame = 1
Query:    1 QGYEVTALEMFHLDRSSAAEFLEVYKGVHPHYNELVEELVTSPCVAMELRLPEGAAAATAAVQASDAGRRTAADAVDPAAAAXXXXXXXXXXTVVAAFRQTAGPWDVEAARVLRPRSLRARYGADNVRCAVHCTDLPEDGPLESRFFFELLQ 456
            QGYEV+AL++F L+RS + EFLEVYKGV P + ++VE+L +  CVAME+R                                            V  FR+TAGPWDVE AR +RP +LRAR+G   +  AVHCTDLPEDG LES++FFE+LQ
Sbjct:  106 QGYEVSALQLFKLERSMSEEFLEVYKGVVPEFPDMVEQLCSGACVAMEVRAENA----------------------------------------VQTFRETAGPWDVEIAREIRPNTLRARFGKSRIMNAVHCTDLPEDGILESQYFFEVLQ 217          
BLAST of mRNA_P-wetherbeei_contig15269.1.1 vs. uniprot
Match: A0A1V9ZC54_9STRA (Nucleoside diphosphate kinase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZC54_9STRA)

HSP 1 Score: 130 bits (328), Expect = 5.480e-34
Identity = 67/150 (44.67%), Postives = 90/150 (60.00%), Query Frame = 1
Query:    4 GYEVTALEMFHLDRSSAAEFLEVYKGVHPHYNELVEELVTSPCVAMELRLPEGAAAATAAVQASDAGRRTAADAVDPAAAAXXXXXXXXXXTVVAAFRQTAGPWDVEAARVLRPRSLRARYGADNVRCAVHCTDLPEDGPLESRFFFELL 453
            G ++TALE+F+LDR+SAAEFLE+Y GV PH+NE V+ L + PC+A+EL+                                           VV  FR+ AGPWD++ AR L+P ++RARYG D V+ AVHCTDLPEDG LES++FF++L
Sbjct:  221 GLQITALELFNLDRASAAEFLELYDGVVPHFNEAVDHLTSGPCIALELQ---------------------------------------GTGEVVQRFREIAGPWDIDMARELKPSTIRARYGHDRVQNAVHCTDLPEDGILESQYFFDIL 331          
BLAST of mRNA_P-wetherbeei_contig15269.1.1 vs. uniprot
Match: A0A5D6XYL4_9STRA (DM10 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XYL4_9STRA)

HSP 1 Score: 131 bits (329), Expect = 7.940e-34
Identity = 72/150 (48.00%), Postives = 89/150 (59.33%), Query Frame = 1
Query:    4 GYEVTALEMFHLDRSSAAEFLEVYKGVHPHYNELVEELVTSPCVAMELRLPEGAAAATAAVQASDAGRRTAADAVDPAAAAXXXXXXXXXXTVVAAFRQTAGPWDVEAARVLRPRSLRARYGADNVRCAVHCTDLPEDGPLESRFFFELL 453
            G  VTA+E+F LDR++AAEFLEVY+GV PH+NE V+   T PC+A+EL                 AGR                       +VVA FR  AGPWDVE A+ LRP ++RAR+G D VR AVHCTDL EDG LES +FF++L
Sbjct:  250 GVAVTAMELFTLDRTTAAEFLEVYEGVVPHFNETVDHFTTGPCIALEL-----------------AGRNA--------------------ESVVAKFRDHAGPWDVEMAKELRPHTIRARFGHDRVRNAVHCTDLAEDGMLESEYFFDIL 362          
BLAST of mRNA_P-wetherbeei_contig15269.1.1 vs. uniprot
Match: A0A8K1CAW0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CAW0_PYTOL)

HSP 1 Score: 130 bits (326), Expect = 5.850e-33
Identity = 68/150 (45.33%), Postives = 86/150 (57.33%), Query Frame = 1
Query:    4 GYEVTALEMFHLDRSSAAEFLEVYKGVHPHYNELVEELVTSPCVAMELRLPEGAAAATAAVQASDAGRRTAADAVDPAAAAXXXXXXXXXXTVVAAFRQTAGPWDVEAARVLRPRSLRARYGADNVRCAVHCTDLPEDGPLESRFFFELL 453
            G  +TA+E+F+LDR++AAEFLEVY+GV PH+NE V+   T PC+AMEL                                            VVA FR+ AGPWDVE A+ L+P ++RARYG D VR AVHCTDL EDG LE  +FF++L
Sbjct:  313 GVSITAMELFNLDRTTAAEFLEVYEGVVPHFNETVDHFTTGPCIAMEL-------------------------------------VGTHPENVVAKFRENAGPWDVEMAKELKPHTIRARYGHDRVRNAVHCTDLAEDGILECEYFFDIL 425          
BLAST of mRNA_P-wetherbeei_contig15269.1.1 vs. uniprot
Match: A0A0P1B7A0_PLAHL (Nucleoside diphosphate kinase 7 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B7A0_PLAHL)

HSP 1 Score: 129 bits (323), Expect = 6.020e-33
Identity = 68/153 (44.44%), Postives = 92/153 (60.13%), Query Frame = 1
Query:    4 GYEVTALEMFHLDRSSAAEFLEVYKGVHPHYNELVEELVTSPCVAMELRLPEGAAAATAAVQASDAGRRTAADAVDPAAAAXXXXXXXXXXTVVAAFRQTAGPWDVEAARVLRPRSLRARYGADNVRCAVHCTDLPEDGPLESRFFFELLQHQ 462
            G  +TA+E+F LDR +AAEFLEVY+GV PH+NE V+   T PC+AMEL                  G+ T+                     VVA FR +AGPWDVE A+ L+P+++RA++G D VR A+HCTDLPEDG LE ++FF++L  +
Sbjct:  250 GVRITAMELFRLDRINAAEFLEVYEGVVPHFNESVDHYTTGPCLAMEL-----------------VGQHTS--------------------DVVAQFRVSAGPWDVEMAKELKPQTIRAKFGIDRVRNAIHCTDLPEDGILECQYFFDILSRR 365          
BLAST of mRNA_P-wetherbeei_contig15269.1.1 vs. uniprot
Match: H3GNB4_PHYRM (DM10 domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=H3GNB4_PHYRM)

HSP 1 Score: 128 bits (321), Expect = 7.920e-33
Identity = 69/153 (45.10%), Postives = 92/153 (60.13%), Query Frame = 1
Query:    4 GYEVTALEMFHLDRSSAAEFLEVYKGVHPHYNELVEELVTSPCVAMELRLPEGAAAATAAVQASDAGRRTAADAVDPAAAAXXXXXXXXXXTVVAAFRQTAGPWDVEAARVLRPRSLRARYGADNVRCAVHCTDLPEDGPLESRFFFELLQHQ 462
            G  +TA+E+F LDR++AAEFLEVY+GV PH+NE V+ L T PC+A+EL                  G+ T                      VV  FR +AGPWDVE A+ L+P++LRA++G D VR AVHCTDL EDG LES++FF++L  +
Sbjct:  230 GVRITAMELFILDRTTAAEFLEVYEGVVPHFNESVDHLTTGPCLALEL-----------------VGQHT--------------------NDVVTQFRASAGPWDVEMAKELKPQTLRAKFGHDRVRNAVHCTDLAEDGVLESQYFFDILSRR 345          
BLAST of mRNA_P-wetherbeei_contig15269.1.1 vs. uniprot
Match: A0A662WYH8_9STRA (DM10 domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WYH8_9STRA)

HSP 1 Score: 128 bits (321), Expect = 1.340e-32
Identity = 68/150 (45.33%), Postives = 91/150 (60.67%), Query Frame = 1
Query:   13 VTALEMFHLDRSSAAEFLEVYKGVHPHYNELVEELVTSPCVAMELRLPEGAAAATAAVQASDAGRRTAADAVDPAAAAXXXXXXXXXXTVVAAFRQTAGPWDVEAARVLRPRSLRARYGADNVRCAVHCTDLPEDGPLESRFFFELLQHQ 462
            +TA+E+F LDR++AAEFLEVY+GV PH+NE V+   T PC+A+EL                  G+ T                      +VA FR +AGPWDVE A+ L+P++LRA+YG D VR AVHCTDL EDG LES++FF++L  +
Sbjct:  262 ITAIELFTLDRTTAAEFLEVYEGVVPHFNETVDHFTTGPCLALEL-----------------VGQHT--------------------EDIVAQFRASAGPWDVEMAKELKPQTLRAKYGHDRVRNAVHCTDLAEDGVLESQYFFDILSRR 374          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15269.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YQV2_9STRA5.160e-3750.66Nucleoside diphosphate kinase n=1 Tax=Tribonema mi... [more]
A0A7S3YA09_HETAK8.980e-3650.65Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
K3W9K3_GLOUD3.780e-3548.65DM10 domain-containing protein n=1 Tax=Globisporan... [more]
A0A7S2XZY6_9STRA2.160e-3445.39Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A1V9ZC54_9STRA5.480e-3444.67Nucleoside diphosphate kinase n=1 Tax=Thraustothec... [more]
A0A5D6XYL4_9STRA7.940e-3448.00DM10 domain-containing protein n=1 Tax=Pythium bra... [more]
A0A8K1CAW0_PYTOL5.850e-3345.33Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0P1B7A0_PLAHL6.020e-3344.44Nucleoside diphosphate kinase 7 n=1 Tax=Plasmopara... [more]
H3GNB4_PHYRM7.920e-3345.10DM10 domain-containing protein n=5 Tax=Phytophthor... [more]
A0A662WYH8_9STRA1.340e-3245.33DM10 domain-containing protein n=2 Tax=Nothophytop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15269contigP-wetherbeei_contig15269:225..1233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog65071.PYU1_T001644
PFAMsDUF1126,NDK
Model size471
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.06e-32
EggNOG OGsCOG0105@1|root,KOG0888@2759|Eukaryota,1MF6E@121069|Pythiales
Ec32 ortholog descriptionNucleoside diphosphate kinase
Ec32 orthologEc-11_005170.1
DescriptionNucleoside diphosphate kinase. Source PGD
Cds size444
COG categoryF
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186050.4615004-UTR-P-wetherbeei_contig15269:224..2511683186050.4615004-UTR-P-wetherbeei_contig15269:224..251Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15269 225..251 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186050.4734387-CDS-P-wetherbeei_contig15269:251..3021683186050.4734387-CDS-P-wetherbeei_contig15269:251..302Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15269 252..302 +
1683186050.485745-CDS-P-wetherbeei_contig15269:840..12331683186050.485745-CDS-P-wetherbeei_contig15269:840..1233Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15269 841..1233 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15269.1.1prot_P-wetherbeei_contig15269.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15269 252..1233 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15269.1.1

>prot_P-wetherbeei_contig15269.1.1 ID=prot_P-wetherbeei_contig15269.1.1|Name=mRNA_P-wetherbeei_contig15269.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=148bp
MFHLDRSSAAEFLEVYKGVHPHYNELVEELVTSPCVAMELRLPEGAAAAT
AAVQASDAGRRTAADAVDPAAAAGTAAADPVAATVVAAFRQTAGPWDVEA
ARVLRPRSLRARYGADNVRCAVHCTDLPEDGPLESRFFFELLQHQGA*
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mRNA from alignment at P-wetherbeei_contig15269:225..1233+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15269.1.1 ID=mRNA_P-wetherbeei_contig15269.1.1|Name=mRNA_P-wetherbeei_contig15269.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1009bp|location=Sequence derived from alignment at P-wetherbeei_contig15269:225..1233+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGGCTACGAAGTGACGGCGCTGGAGATGTTCCACCTCGACCGGAGCAG CGCTGCCGAATTTCTGGAAGTTTACAAGGTAAAGAGGGTGCGACAGCCGT TTCCTTTCGTCGTTTCGGCCCCGTCGGCCTGCTGCTGGCGTTGCTGCCGA ATCCCGGCCTGCTGCCGCCGGCGCTGCCGCCGCGCTGCATTCTCACTGCG TTGTCTCGGAGTGGCCCGTCGGGGTTCCGGTTTGCTACGCTGCTGCCGCC GCTCCAGCTGCCTTCATTGCTGCCGTTCTCTTGCGTCGCAGATGCGCCTC ATCCGCTTTCTCAAAGGGGCTCTCGGTCGTTCCTTCATTCTCCAGCACCC TGCTGCCGTGTGTCGGCCTTCCACCTTCCCTTCGTTGTCTTTGACGATGG CCGCTGCGAGTCCAGTTCCTTGGATTTGTCAGGAATGGCCGTTACAACCG TTGGATCTGCTGACCTGGCGTTGGCCGCTCCAAATCCGTCCCGACCTCCG CCCTGGTGCGGCCTCATCCGTTCTCATTCGGCCCTATCTCATCCCGTCCT GTTCGGTCTCGTCCCATCTCGTCCGGTATCGTCCGGTCCCGTCCCGACGG CTGACCTTTTCTGCAGGGCGTCCACCCGCACTACAACGAGCTCGTCGAAG AGCTTGTCACCTCACCCTGCGTCGCCATGGAGCTCCGCCTACCAGAAGGA GCGGCTGCCGCGACTGCAGCGGTACAGGCGTCGGACGCCGGGCGCAGGAC CGCTGCTGACGCCGTCGACCCTGCCGCTGCTGCTGGGACCGCCGCTGCAG ATCCCGTCGCGGCGACCGTGGTAGCGGCGTTCCGGCAGACGGCGGGGCCG TGGGACGTCGAAGCGGCGCGGGTGCTGCGGCCGCGGAGCCTCCGGGCGCG CTACGGTGCCGACAATGTGCGGTGCGCCGTGCACTGCACCGACCTGCCGG AGGACGGCCCGCTCGAGAGTCGCTTCTTTTTCGAGTTGCTACAGCACCAG GGGGCATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15269:225..1233+

>mRNA_P-wetherbeei_contig15269.1.1 ID=mRNA_P-wetherbeei_contig15269.1.1|Name=mRNA_P-wetherbeei_contig15269.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=444bp|location=Sequence derived from alignment at P-wetherbeei_contig15269:225..1233+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCCACCTCGACCGGAGCAGCGCTGCCGAATTTCTGGAAGTTTACAA
GGGCGTCCACCCGCACTACAACGAGCTCGTCGAAGAGCTTGTCACCTCAC
CCTGCGTCGCCATGGAGCTCCGCCTACCAGAAGGAGCGGCTGCCGCGACT
GCAGCGGTACAGGCGTCGGACGCCGGGCGCAGGACCGCTGCTGACGCCGT
CGACCCTGCCGCTGCTGCTGGGACCGCCGCTGCAGATCCCGTCGCGGCGA
CCGTGGTAGCGGCGTTCCGGCAGACGGCGGGGCCGTGGGACGTCGAAGCG
GCGCGGGTGCTGCGGCCGCGGAGCCTCCGGGCGCGCTACGGTGCCGACAA
TGTGCGGTGCGCCGTGCACTGCACCGACCTGCCGGAGGACGGCCCGCTCG
AGAGTCGCTTCTTTTTCGAGTTGCTACAGCACCAGGGGGCATGA
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