mRNA_P-wetherbeei_contig15262.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15262.1.1
Unique NamemRNA_P-wetherbeei_contig15262.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig15262.1.1 vs. uniprot
Match: A0A835YLV6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLV6_9STRA)

HSP 1 Score: 141 bits (356), Expect = 2.120e-33
Identity = 119/276 (43.12%), Postives = 155/276 (56.16%), Query Frame = 2 
Query:   20 AMQRHYEARLAEADDEIRRMEGDRAALAAALARSEERQHEGVAAAEEAARLRKRLLEQDEHLLAARGKHRELTSLAQGSSRRDGEVRQLEAEITRMKRARVDLSKELDAHKKHQQEVLQQKAREIQALHRSAARDQAALRKLDAAKTKAEAVARRHLEELALLRRLQRQK----------------------------------------LGVGRRAAALTAEEKRHKAELEARVAALAQRQEAAERLAAEYEKKLVLLQQKESLELVRTSLMARR 727
            AM++HY  +LAE D+E+RRME D+  L   L   E R     A A E  +LR  L E+   L   + + RE+  LA   +R +  ++ L+ EI+RMKRARV+L K LD  KK Q+E+L  K  EI AL +SA RD A +++L  AK +AE V +RHLEELALLRRLQRQK                                        + +GR    LTAEE+  K  LEARV   A+R+EAA+RL  EY  KLVLLQQ+E+L+L R SL +RR
Sbjct:  250 AMEQHYSRKLAEMDEEVRRMEADQEXLXXXLHDLERRSE--TALASETQQLRATLEEKAAALEGMKQRQREMGRLAASRTRDEARLKGLDDEISRMKRARVELQKRLDEEKKKQRELLVAKTAEITALRKSARRDAAEIKRLGQAKERAEVVTKRHLEELALLRRLQRQKASTSLTRHVSRPYVVMIDIRFSEDFGSAVNVLSHVTLRAQMAIGR-GKPLTAEERGTKRWLEARVREAARREEAADRLQEEYRSKLVLLQQRENLQLARDSLRSRR 522
[Close]
BLAST of mRNA_P-wetherbeei_contig15262.1.1 vs. uniprot
Match: A0A6H5KW93_9PHAE (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW93_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 4.010e-28
Identity = 141/360 (39.17%), Postives = 207/360 (57.50%), Query Frame = 2 
Query:    2 GRRDLAAMQRHYEARLAEADDEIRRMEGDRAALAAALARSEERQHEGVAAAEEAARLRKRLLEQDEHLLAARGKHRELTSLAQGSSRRDGEVRQLEAEITRMKRARVDLSKELDAHKKHQQEVLQQKAREIQALHRSAARDQAALRKLDAAKTKAEAVARRHLEELALLRRLQRQKLGVGRRAAALTAEEKRHKAELE----ARVAALAQRQEAAERLAAEYEKKLVLLQQKESLELVRTSLMARRIGLGISAASGTSPRAAXXXXXXXXKGHGAMARXXXXXXXXXXXXXXXAVGAG------PPMGPRELLELGAGV--EGRLSQEEEETLQEVEDRLESTLAQLHFKDEKIRSMEAE 1045
            G+     MQ+HYE +L E D E+ R E +   L + LA+ E++    VA   E  +L+K+L ++   L  A+ +  EL+ L++    +   +R LE EI +MK+ ++DL + LD+ KK Q+E+L QK++EI +L RSA +DQA +++L+ AK+KAEAV++RHL+ELAL+RRLQRQKLGVGR+   LTA+E+  K  L+     R ++L  +++  +R A                   RT     R  +   A+S +  R +         G      XXXXXXXXXXXXXX A  AG      PP    E + L A +  EG L +EE +TL+EVE+RLES   +L +KD KI S++ E
Sbjct:  777 GQASYETMQQHYEHKLREMDVEVHRHEQEHERLLSDLAKLEKQTE--VAVQSEREKLQKQLKDKTAALAKAKERQSELSVLSRDRRIKQDTMRGLETEILKMKKNKLDLQRRLDSEKKRQREILMQKSKEIMSLKRSAMKDQAEVKRLERAKSKAEAVSKRHLDELALIRRLQRQKLGVGRKQK-LTAQERETKRLLDKKDCGRFSSLTDQRQLRDRDA-------------------RT-----RARVPAFASSRSDNRLSPRPPVPRFGGGXXXXXXXXXXXXXXXXXXXEAGKAGEASSVSPPSTENEEMTLRAALPAEGGLDEEEMDTLREVEERLESNKVELEYKDRKIDSIQQE 1109
[Close]
BLAST of mRNA_P-wetherbeei_contig15262.1.1 vs. uniprot
Match: K3XBM4_GLOUD (Kinesin motor domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XBM4_GLOUD)

HSP 1 Score: 56.6 bits (135), Expect = 4.960e-5
Identity = 49/161 (30.43%), Postives = 88/161 (54.66%), Query Frame = 2 
Query:   23 MQRHYEARLAEADDEIRRMEGDRAALAAALARSEERQHEGVAAAEEAA--RLRKRLLEQDEHLLAARGKHRELTSLAQGSSRRDGEVRQLEAEITRMKRARVDLSKELDAHKKHQQEVLQQKAREIQALHRSAARDQAALRKLDAAKTKAEAVARRHLEEL 499
            M+  YE ++A+  +E+R  + DR  L   + + E +  EG  +   A   +L K L  +++ L A R K  E+        + + ++R L AEI+ MKR +VDL K++   +K  ++  +Q+ +EI +L R+ ARD+  +++L   K   E V +R +EE+
Sbjct:  657 MKNFYEQKMAQMAEEVRMAQMDRDKLIEEIQQIETKIREGDHSGGGARLDKLSKDLKTKEDELSALRKKQTEMNRFVNQKKKNEMQLRVLTAEISNMKRQKVDLVKKMQEERKRYEDEAKQRQKEILSLKRTQARDKQQIQRLGIQKDAQERVLKRKMEEI 817
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15262.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835YLV6_9STRA2.120e-3343.12Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5KW93_9PHAE4.010e-2839.17Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
K3XBM4_GLOUD4.960e-530.43Kinesin motor domain-containing protein n=1 Tax=Gl... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15262contigP-wetherbeei_contig15262:2..1576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog67593.Physo142668
PFAMsKinesin
Model size1052
Max annot lvl4776|Peronosporales
KEGG koko:K10395
Hectar predicted targeting categoryother localisation
Exons3
Evalue5.96e-07
EggNOG OGsCOG5059@1|root,KOG0244@2759|Eukaryota,3QEDW@4776|Peronosporales
Descriptionmicrotubule motor activity
Cds size1029
COG categoryZ
BRITEko00000,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186050.249565-UTR-P-wetherbeei_contig15262:1..231683186050.249565-UTR-P-wetherbeei_contig15262:1..23Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15262 2..23 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186050.2657745-CDS-P-wetherbeei_contig15262:23..2531683186050.2657745-CDS-P-wetherbeei_contig15262:23..253Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15262 24..253 +
1683186050.2764213-CDS-P-wetherbeei_contig15262:539..6841683186050.2764213-CDS-P-wetherbeei_contig15262:539..684Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15262 540..684 +
1683186050.2864003-CDS-P-wetherbeei_contig15262:922..15761683186050.2864003-CDS-P-wetherbeei_contig15262:922..1576Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15262 923..1576 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15262.1.1prot_P-wetherbeei_contig15262.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15262 24..1576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15262.1.1

>prot_P-wetherbeei_contig15262.1.1 ID=prot_P-wetherbeei_contig15262.1.1|Name=mRNA_P-wetherbeei_contig15262.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=343bp
MQRHYEARLAEADDEIRRMEGDRAALAAALARSEERQHEGVAAAEEAARL
RKRLLEQDEHLLAARGKHRELTSLAQGSSRRDGEVRQLEAEITRMKRARV
DLSKELDAHKKHQQEVLQQKAREIQALHRSAARDQAALRKLDAAKTKAEA
VARRHLEELALLRRLQRQKLGVGRRAAALTAEEKRHKAELEARVAALAQR
QEAAERLAAEYEKKLVLLQQKESLELVRTSLMARRIGLGISAASGTSPRA
AASAAAAVVKGHGAMARSAEAATGSAVAVSAAAVGAGPPMGPRELLELGA
GVEGRLSQEEEETLQEVEDRLESTLAQLHFKDEKIRSMEAEAR
back to top

mRNA from alignment at P-wetherbeei_contig15262:2..1576+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15262.1.1 ID=mRNA_P-wetherbeei_contig15262.1.1|Name=mRNA_P-wetherbeei_contig15262.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1575bp|location=Sequence derived from alignment at P-wetherbeei_contig15262:2..1576+ (Phaeothamnion wetherbeei SAG_119_79)
GGGCCGGCGAGACCTGGCGGCGATGCAGCGGCACTACGAGGCGCGCCTGG
CGGAGGCGGACGACGAGATCCGACGGATGGAGGGCGACCGCGCGGCGTTG
GCAGCGGCGCTGGCGCGGTCGGAGGAGCGGCAGCATGAGGGGGTGGCGGC
GGCGGAGGAGGCGGCGCGGCTGCGGAAGCGGCTGTTGGAGCAGGACGAGC
ACCTGCTGGCGGCGCGGGGCAAGCACCGCGAGCTCACGTCGCTGGCACAA
GGGTGCGTTGCGAATGTCATGCCGTTTTTGGTGTGCCTTTTTATAACCTT
CTGTGTTTTCGTTCTTCAGTTCCGCAGCTCTTGTACCTGCTACGGTGTTA
GATGCCACCATCGGTTGTTGTCGTTGGAGGCGTTACGTCGCAAGCTTTCA
GGTGCTTGCTTTTTGTATCCACGTAGTTATGATTTTGAAGTTTTGGTTTT
AAGGATCCGTAAACCGGGCGCTCTTTGTCCGCTGGGGGCGGTGGCGGCGG
TGCTCTCCGGTCTGGAACCGGCGGTCTATCAATGACAGGTCATCGCGGCG
GGACGGCGAGGTGCGTCAGCTGGAGGCGGAGATCACGCGCATGAAACGGG
CGCGGGTGGACCTGAGCAAGGAGCTCGATGCCCACAAGAAGCACCAGCAG
GAGGTGCTGCAGCAGAAGGCCCGTGAGATTCAGGTCCGTTCTGGTTATCA
TGCCTTTGGATGGTCAAGGTTTACGTTGTGTGGGCTGCTTTTCCGTCGGC
AGTTAAACTTGGTGATTATGGGTGTCAAACCGGGAGGAGACCAGGCGGTG
GAATGGGTGGCTGCCAGACCGTGCAAACGGAAAAGCGCAGTGTCAGATTT
GCTCATGGCCAGTCCTGTCCATTCGTAAACCACATCATCTTCCTGCCGTC
CTTCACTTCTCTTCCCGGCAGGCACTACACCGGAGCGCGGCGCGCGACCA
GGCGGCGCTCCGCAAGCTGGACGCCGCCAAGACGAAGGCTGAGGCGGTCG
CCCGTCGCCACCTCGAGGAATTGGCGCTGCTGCGACGGCTGCAGCGGCAG
AAGCTGGGCGTCGGGCGGCGGGCGGCGGCGCTGACGGCGGAGGAGAAGCG
GCACAAGGCGGAGCTGGAGGCGCGCGTAGCGGCGCTGGCGCAGCGGCAAG
AGGCGGCGGAGCGGCTAGCGGCGGAGTACGAGAAGAAGCTGGTTTTGCTT
CAGCAGAAGGAGAGCCTGGAGCTCGTGCGGACATCGCTGATGGCGCGCCG
GATCGGCCTCGGCATCAGCGCCGCGTCAGGGACGAGCCCCCGCGCCGCCG
CGTCTGCCGCCGCCGCCGTGGTCAAAGGCCACGGAGCAATGGCGCGGTCC
GCCGAGGCGGCCACCGGCAGTGCAGTGGCAGTTTCGGCAGCGGCAGTGGG
AGCGGGGCCACCTATGGGGCCGCGGGAGCTGCTGGAGCTGGGGGCCGGGG
TGGAGGGCCGCCTGAGCCAGGAGGAGGAGGAGACACTGCAGGAAGTTGAA
GACCGGCTGGAGAGCACCCTGGCGCAGCTACACTTCAAGGACGAAAAGAT
CCGCTCGATGGAGGCCGAGGCCCGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig15262:2..1576+

>mRNA_P-wetherbeei_contig15262.1.1 ID=mRNA_P-wetherbeei_contig15262.1.1|Name=mRNA_P-wetherbeei_contig15262.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1029bp|location=Sequence derived from alignment at P-wetherbeei_contig15262:2..1576+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGCGGCACTACGAGGCGCGCCTGGCGGAGGCGGACGACGAGATCCG
ACGGATGGAGGGCGACCGCGCGGCGTTGGCAGCGGCGCTGGCGCGGTCGG
AGGAGCGGCAGCATGAGGGGGTGGCGGCGGCGGAGGAGGCGGCGCGGCTG
CGGAAGCGGCTGTTGGAGCAGGACGAGCACCTGCTGGCGGCGCGGGGCAA
GCACCGCGAGCTCACGTCGCTGGCACAAGGGTCATCGCGGCGGGACGGCG
AGGTGCGTCAGCTGGAGGCGGAGATCACGCGCATGAAACGGGCGCGGGTG
GACCTGAGCAAGGAGCTCGATGCCCACAAGAAGCACCAGCAGGAGGTGCT
GCAGCAGAAGGCCCGTGAGATTCAGGCACTACACCGGAGCGCGGCGCGCG
ACCAGGCGGCGCTCCGCAAGCTGGACGCCGCCAAGACGAAGGCTGAGGCG
GTCGCCCGTCGCCACCTCGAGGAATTGGCGCTGCTGCGACGGCTGCAGCG
GCAGAAGCTGGGCGTCGGGCGGCGGGCGGCGGCGCTGACGGCGGAGGAGA
AGCGGCACAAGGCGGAGCTGGAGGCGCGCGTAGCGGCGCTGGCGCAGCGG
CAAGAGGCGGCGGAGCGGCTAGCGGCGGAGTACGAGAAGAAGCTGGTTTT
GCTTCAGCAGAAGGAGAGCCTGGAGCTCGTGCGGACATCGCTGATGGCGC
GCCGGATCGGCCTCGGCATCAGCGCCGCGTCAGGGACGAGCCCCCGCGCC
GCCGCGTCTGCCGCCGCCGCCGTGGTCAAAGGCCACGGAGCAATGGCGCG
GTCCGCCGAGGCGGCCACCGGCAGTGCAGTGGCAGTTTCGGCAGCGGCAG
TGGGAGCGGGGCCACCTATGGGGCCGCGGGAGCTGCTGGAGCTGGGGGCC
GGGGTGGAGGGCCGCCTGAGCCAGGAGGAGGAGGAGACACTGCAGGAAGT
TGAAGACCGGCTGGAGAGCACCCTGGCGCAGCTACACTTCAAGGACGAAA
AGATCCGCTCGATGGAGGCCGAGGCCCGC
back to top