mRNA_P-wetherbeei_contig15255.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15255.2.1
Unique NamemRNA_P-wetherbeei_contig15255.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15255.2.1 vs. uniprot
Match: A0A2E0RVC5_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0RVC5_9ACTN)

HSP 1 Score: 373 bits (957), Expect = 3.850e-130
Identity = 181/188 (96.28%), Postives = 186/188 (98.94%), Query Frame = 1
Query:    1 NAAVREARYVCGRDVDTGQRLDGRPVAIWAGTLVYLVLLEQIGNTLRPVGGRDLPKQVRESAAARALRQFAPHTTKPQREVIYALRNAFAHEFGLFNVGRGGRYRHVFTLDDEPGGPLVRWPRRRWDGTVEGVRRATRTTVNLVAVGDLCEDVVRSVREHSNSVALRSRVPMAELQKRYAFRISETPD 564
            NAAVREARYVCGRDVDTG+RLDGRPVAIWAGTLVYLVLLEQIGNTLRPVGGRDLPKQVRESAAARALRQFAPHTTKPQREVIYALRNAFAHEFGLFN GRGGRYRHVFTLDDEPGGPLVRWPRRRWDGTV+GVRRATRTTVNLVAVGDLCEDVVRSVREHSNSVALRSRVP+AELQKR+AF IS+TPD
Sbjct:   34 NAAVREARYVCGRDVDTGERLDGRPVAIWAGTLVYLVLLEQIGNTLRPVGGRDLPKQVRESAAARALRQFAPHTTKPQREVIYALRNAFAHEFGLFNDGRGGRYRHVFTLDDEPGGPLVRWPRRRWDGTVDGVRRATRTTVNLVAVGDLCEDVVRSVREHSNSVALRSRVPLAELQKRFAFSISDTPD 221          
BLAST of mRNA_P-wetherbeei_contig15255.2.1 vs. uniprot
Match: UPI001FF1000E (hypothetical protein n=1 Tax=Amycolatopsis sp. WQ 127309 TaxID=2932773 RepID=UPI001FF1000E)

HSP 1 Score: 121 bits (303), Expect = 4.580e-31
Identity = 71/157 (45.22%), Postives = 90/157 (57.32%), Query Frame = 1
Query:    4 AAVREARYVCGRDVDTGQRLDGRPVAI--WAGTLVYLVLLEQIGNTLRPVGGRDLPKQVRESAAARALRQFAPHTTKPQREVIYALRNAFAHEFGLFNVGRGGRYRHVFTLDDEPG-GPLVRWPRRRWDGTVEGVRRATRTTVNLVAVGDLCEDVVR 465
            A +REAR   GRD +TG+   G+      W G + YL+L++Q+G+  R  G              RALRQFAP   +P+RE +YALR +  H+FGL  VG  GR  H F LDD  G GP+VR P   WDG  E  RR   T V+L A+GDL E+VVR
Sbjct:   22 AVLREARRATGRDRETGRIEPGKAALSGNWLGAVGYLLLVDQVGSACRAPG----------PPVVRALRQFAPRVGEPEREALYALRCSLVHDFGLVTVGGPGRTHH-FMLDDAAGSGPVVRLPPEPWDGRAEHCRRLNATWVDLRALGDLAEEVVR 167          
BLAST of mRNA_P-wetherbeei_contig15255.2.1 vs. uniprot
Match: UPI00165DF3C4 (hypothetical protein n=1 Tax=Chitinophaga qingshengii TaxID=1569794 RepID=UPI00165DF3C4)

HSP 1 Score: 102 bits (255), Expect = 8.160e-24
Identity = 64/185 (34.59%), Postives = 98/185 (52.97%), Query Frame = 1
Query:    4 AAVREARYVCGRDVDTGQR--LDGRPVAIWAGTLVYLVLLEQIGNTLRPVGGRDLPKQVRESAAARALRQFAPHTTKPQREVIYALRNAFAHEFGLFNV-GRGGRYRHVFTLDDEPGGPLVRWPRRRWDGTVEGVRRATRTTVNLVAVGDLCEDVVRSVREHS--NSVALRSRVPMAELQKRYAF 543
            A +R+AR   GR+++TGQ    D      W G + YL+LL+QIG   +P     +  Q + ++  R L+ F+      +R  IYALR A AH++GL+N+ GR     H F L      PL+  P+ +WDG +        TTVNL+A+GDL E++  S++  +  N + +  +    EL  RY F
Sbjct:   31 AGIRDARKFTGRNIETGQIEIYDNNVNGCWLGAIGYLILLDQIGKCFKP-STISINFQSKTASIVRTLQYFSD-LQDSERYCIYALRCALAHDYGLYNINGREPALTHHFLLRANSTTPLIELPKDQWDGKISTRNPENCTTVNLLALGDLVENIFESLKTMASQNQLEIILQGGTEELSSRYGF 213          
BLAST of mRNA_P-wetherbeei_contig15255.2.1 vs. uniprot
Match: A0A1F3ILK2_9BACT (Uncharacterized protein n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A1F3ILK2_9BACT)

HSP 1 Score: 95.5 bits (236), Expect = 1.190e-20
Identity = 62/198 (31.31%), Postives = 98/198 (49.49%), Query Frame = 1
Query:   10 VREARYVCGRDVDTGQRL---------DGRP-----VAIWAGTLVYLVLLEQIGNTLRPVGGRDLPKQVRESAAARALRQFAPHTTKPQREVIYALRNAFAHEFGLFNVGRGGRYRHVFTLDDEPGGPLVRWPRRRWDGTVEGVRRATRTTVNLVAVGDLCEDVVRSVREHS--NSVALRSRVPMAELQKRYAFRISE 555
            +++AR + GR +DTG +          D  P     +  W GT+ YL LL+QIG   +P     +   +  SA  + L+ F    +  + ++IYALRNAF H++ +FN   G    + F L   P  P+V+ P   WDG    V+  ++T  NL A+GDL E +   +++ +  N + +       EL +RY F  SE
Sbjct:   62 LKDARKISGRHMDTGDKFPDNSKCSKDDNGPYFRGHLGSWLGTMGYLALLDQIGKCYKPKSKAKITGSI--SAIKKCLKYFTT-LSDDEIDIIYALRNAFFHDYSIFNKYNGKN--NFFHLGHHPTKPIVKAPAENWDGNYNNVKLESQTWANLEAIGDLVEKIYEDLQQLALTNQLDIELDGGHEELFRRYIFVSSE 254          
BLAST of mRNA_P-wetherbeei_contig15255.2.1 vs. uniprot
Match: A0A1K1SEE5_9BACT (Uncharacterized protein n=1 Tax=Chitinophaga sancti TaxID=1004 RepID=A0A1K1SEE5_9BACT)

HSP 1 Score: 86.7 bits (213), Expect = 1.290e-17
Identity = 57/186 (30.65%), Postives = 94/186 (50.54%), Query Frame = 1
Query:    4 AAVREARYVCGRDVDTGQR--LDGRPVAIWAGTLVYLVLLEQIGNTLRP-VGGRDLPKQVRESAAARALRQFAPHTTKPQREVIYALRNAFAHEFGLFNVGRG-GRYRHVFTLDDEPGGPLVRWPRRRWDGTVEGVRRATRTTVNLVAVGDLCEDVVRSVREHSNSVALRSRVP--MAELQKRYAF 543
            A +R++R   GR+++TG+    D      W G + YL+LL+Q+G   +P +   + P+        RAL+ F+  +   +   +YALR A AH++ L+N+ R      H F L      PL+  P  +W+G +        TTVNL+ +GDL E++ +S++  S+   L   +     EL  RY F
Sbjct:   31 AGIRDSRKFTGRNIETGEIEIYDNNVNGCWLGAIGYLILLDQVGKCFKPSMTSINFPENTNN--ILRALKYFSSLSDN-EIYCLYALRCALAHDYALYNINRRVPALTHHFKLRSNSVTPLIELPSYQWNGDIITRNSQNCTTVNLLKLGDLVEEIFKSLKIMSSQKQLEIILQGGSEELSSRYGF 213          
BLAST of mRNA_P-wetherbeei_contig15255.2.1 vs. uniprot
Match: A0A562SR52_9BACT (Uncharacterized protein n=1 Tax=Lacibacter cauensis TaxID=510947 RepID=A0A562SR52_9BACT)

HSP 1 Score: 82.4 bits (202), Expect = 5.390e-16
Identity = 56/184 (30.43%), Postives = 87/184 (47.28%), Query Frame = 1
Query:    4 AAVREARYVCGRDVDTGQRLDGRPVAI---WAGTLVYLVLLEQIGNTLRPVGGRDLPKQVRESAAARALRQFAPHTTKPQREVIYALRNAFAHEFGLFNVG-RGGRYRHVFTLDDEPGGPLVRWPRRRWDGTVEGVRRATRTTVNLVAVGDLCEDVVRSVREHSNSVALRSRVP--MAELQKRY 537
            AA+R+AR   GR+++TG+  D     +   W G++ YLV+L+Q+G   +    +  P     S   R L+      +  + + IYALRNAFAH++ L N   +     H FTL      P ++ P  +WDG  E       T + L  +GD  ED+ + V        L   +P    E++ RY
Sbjct:   34 AALRDARQATGRNIETGENPDKNNNTLSSNWLGSICYLVILDQLGKCYK---AKKDPNLTDLSPIQRCLK-LNTKLSDQEIDAIYALRNAFAHDYSLSNKNSKKPSLTHHFTLRGAYTNPFIKIPSVKWDGQNENKSIDNTTIIGLPWIGDFVEDIYKIVSSLHTENKLEIIIPGGAEEIKNRY 213          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15255.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2E0RVC5_9ACTN3.850e-13096.28Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
UPI001FF1000E4.580e-3145.22hypothetical protein n=1 Tax=Amycolatopsis sp. WQ ... [more]
UPI00165DF3C48.160e-2434.59hypothetical protein n=1 Tax=Chitinophaga qingshen... [more]
A0A1F3ILK2_9BACT1.190e-2031.31Uncharacterized protein n=2 Tax=Bacteroidetes TaxI... [more]
A0A1K1SEE5_9BACT1.290e-1730.65Uncharacterized protein n=1 Tax=Chitinophaga sanct... [more]
A0A562SR52_9BACT5.390e-1630.43Uncharacterized protein n=1 Tax=Lacibacter cauensi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15255contigP-wetherbeei_contig15255:1062..1628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog553177.CAPSP0001_2615
Model size567
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.36e-13
EggNOG OGs28R91@1|root,2ZDNQ@2|Bacteria,4P6ZM@976|Bacteroidetes,1IB5E@117743|Flavobacteriia,1ESPU@1016|Capnocytophaga
Cds size567
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186049.8829384-CDS-P-wetherbeei_contig15255:1061..16281683186049.8829384-CDS-P-wetherbeei_contig15255:1061..1628Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15255 1062..1628 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15255.2.1prot_P-wetherbeei_contig15255.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15255 1062..1628 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15255.2.1

>prot_P-wetherbeei_contig15255.2.1 ID=prot_P-wetherbeei_contig15255.2.1|Name=mRNA_P-wetherbeei_contig15255.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=189bp
NAAVREARYVCGRDVDTGQRLDGRPVAIWAGTLVYLVLLEQIGNTLRPVG
GRDLPKQVRESAAARALRQFAPHTTKPQREVIYALRNAFAHEFGLFNVGR
GGRYRHVFTLDDEPGGPLVRWPRRRWDGTVEGVRRATRTTVNLVAVGDLC
EDVVRSVREHSNSVALRSRVPMAELQKRYAFRISETPD*
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mRNA from alignment at P-wetherbeei_contig15255:1062..1628-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15255.2.1 ID=mRNA_P-wetherbeei_contig15255.2.1|Name=mRNA_P-wetherbeei_contig15255.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=567bp|location=Sequence derived from alignment at P-wetherbeei_contig15255:1062..1628- (Phaeothamnion wetherbeei SAG_119_79)
AATGCCGCAGTTCGTGAGGCACGGTACGTCTGCGGCCGCGATGTAGATAC TGGCCAGCGCCTCGATGGTCGGCCAGTCGCGATCTGGGCCGGCACGCTCG TGTACCTCGTGCTGCTCGAGCAGATCGGCAACACCTTGCGACCCGTGGGC GGGCGTGATCTCCCGAAGCAGGTTCGAGAGTCGGCGGCGGCGCGGGCACT CCGTCAGTTCGCGCCACACACGACGAAGCCACAGCGGGAGGTGATCTACG CGCTCAGGAATGCCTTCGCCCATGAGTTTGGCCTCTTCAACGTCGGCCGA GGCGGGCGCTACCGCCATGTGTTCACGCTAGACGACGAACCGGGCGGACC GCTCGTTCGCTGGCCGCGGCGACGATGGGATGGAACGGTGGAAGGAGTGC GCCGAGCAACCAGAACAACGGTGAATCTCGTCGCCGTCGGAGACCTCTGC GAGGACGTTGTGCGCAGCGTTCGGGAGCACTCGAACTCAGTTGCACTTCG CTCTCGTGTGCCGATGGCCGAGCTGCAGAAGCGCTATGCATTCCGCATTA GCGAAACGCCGGATTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15255:1062..1628-

>mRNA_P-wetherbeei_contig15255.2.1 ID=mRNA_P-wetherbeei_contig15255.2.1|Name=mRNA_P-wetherbeei_contig15255.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=567bp|location=Sequence derived from alignment at P-wetherbeei_contig15255:1062..1628- (Phaeothamnion wetherbeei SAG_119_79)
AATGCCGCAGTTCGTGAGGCACGGTACGTCTGCGGCCGCGATGTAGATAC
TGGCCAGCGCCTCGATGGTCGGCCAGTCGCGATCTGGGCCGGCACGCTCG
TGTACCTCGTGCTGCTCGAGCAGATCGGCAACACCTTGCGACCCGTGGGC
GGGCGTGATCTCCCGAAGCAGGTTCGAGAGTCGGCGGCGGCGCGGGCACT
CCGTCAGTTCGCGCCACACACGACGAAGCCACAGCGGGAGGTGATCTACG
CGCTCAGGAATGCCTTCGCCCATGAGTTTGGCCTCTTCAACGTCGGCCGA
GGCGGGCGCTACCGCCATGTGTTCACGCTAGACGACGAACCGGGCGGACC
GCTCGTTCGCTGGCCGCGGCGACGATGGGATGGAACGGTGGAAGGAGTGC
GCCGAGCAACCAGAACAACGGTGAATCTCGTCGCCGTCGGAGACCTCTGC
GAGGACGTTGTGCGCAGCGTTCGGGAGCACTCGAACTCAGTTGCACTTCG
CTCTCGTGTGCCGATGGCCGAGCTGCAGAAGCGCTATGCATTCCGCATTA
GCGAAACGCCGGATTAG
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