mRNA_P-wetherbeei_contig15255.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15255.1.1
Unique NamemRNA_P-wetherbeei_contig15255.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15255.1.1 vs. uniprot
Match: A0A2E0RVC1_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0RVC1_9ACTN)

HSP 1 Score: 328 bits (842), Expect = 1.700e-112
Identity = 158/165 (95.76%), Postives = 163/165 (98.79%), Query Frame = 1
Query:    1 MGDEYTWPEAGGAFFTFKRTRDDAYTWMRQSLHEYAYMYRESAEVLMEKACNAPGLLNVHAIPAVYLFRHFVELSLKDLLVQTGRLNDKTESYPDKHRLEPLWQKLRALLDEADLGDSDDDRATLDVVDDLIRQLDTADPSAMAFRYPLGTQRRDGTREGLLSDN 495
            MGDEYTWPEAGG FFTFKRTRDDAYTWMRQSLHEYAYMYRESAEVLME+ACNAPGLLNVHAIPAVYLFRHFVELSLKDLLVQTGRLNDKTESYPDKHRLEPLWQKLRALLDEA+LGDSDDDRATLDVVDDLIRQLDTADPSAMAFRYP+GTQR+DG+RE LLSDN
Sbjct:    1 MGDEYTWPEAGGTFFTFKRTRDDAYTWMRQSLHEYAYMYRESAEVLMERACNAPGLLNVHAIPAVYLFRHFVELSLKDLLVQTGRLNDKTESYPDKHRLEPLWQKLRALLDEAELGDSDDDRATLDVVDDLIRQLDTADPSAMAFRYPVGTQRKDGSREVLLSDN 165          
BLAST of mRNA_P-wetherbeei_contig15255.1.1 vs. uniprot
Match: A0A4V1B8E1_9HYPH (Uncharacterized protein n=1 Tax=Beijerinckiaceae bacterium TaxID=1978229 RepID=A0A4V1B8E1_9HYPH)

HSP 1 Score: 81.6 bits (200), Expect = 8.530e-16
Identity = 52/154 (33.77%), Postives = 77/154 (50.00%), Query Frame = 1
Query:    1 MGDEYTWPEAGGAFFTFKRTRDDAYT-----WMRQSLHEYAYMYRESAEVLMEKACNAPGLLNVHAIPAVYLFRHFVELSLKDLLVQTGRLNDKTESYPDKHRLEPLWQKLRALLDEADLGDSDDDRATLDVVDDLIRQLDTADPSAMAFRYPL 447
            +  E+TWPE G   F     R D  T     W R  L   A  YRE+A+ L++       L      P ++L+RHF+EL LK +L+  GR   +   +   H L  LW K+R +++ A  G+   D    D V+  IR++  ADP + +FRYP+
Sbjct:   10 LNPEFTWPEPGDRLFVAPGGRADEGTLASNAWTRLVL--MADGYREAADRLVDAVATDTVLQGTVVYPVIFLYRHFMELELKYVLLTYGRHFGEDADWKS-HSLTDLWAKVRPIIETA--GNGTGDGGANDAVEACIREMSAADPMSFSFRYPV 158          
BLAST of mRNA_P-wetherbeei_contig15255.1.1 vs. uniprot
Match: A0A1E7HBV6_9DELT (Uncharacterized protein n=1 Tax=Desulfuromonadales bacterium C00003096 TaxID=1869311 RepID=A0A1E7HBV6_9DELT)

HSP 1 Score: 78.2 bits (191), Expect = 2.070e-14
Identity = 47/158 (29.75%), Postives = 81/158 (51.27%), Query Frame = 1
Query:   19 WPEAGGAFFTFKRTRDDA---------YTWMRQSLHEYAYMYRESAEVLMEKACNAPGLLNVHAIPAVYLFRHFVELSLKDLLVQTGRLNDKTESYPDKHRLEPLWQKLRALLDEADLGDSDDDRATLDVVDDLIRQLDTADPSAMAFRYPLGTQRRD 465
            WP  G   F     RDD          Y     +L  YA  Y+ + ++L+E         ++   P V+L+RH++EL LK+++    +L D ++ +P  HR++ LW++ + +L+E ++   D     L+ V++ I Q    DP +MAFRYP  T ++D
Sbjct:   11 WPRKGDQLF-----RDDGGWLYNACLNYLPYSDTLTLYADAYKRAGDLLIEYIKEKNRDKDLLVYPLVFLYRHYIELRLKEIIRDGNQLLDISKKFPKHHRIDELWKECKRILEEVEVPSKD-----LEAVEECILQFTEKDPISMAFRYP--TDKKD 156          
BLAST of mRNA_P-wetherbeei_contig15255.1.1 vs. uniprot
Match: UPI0012FCF1D2 (hypothetical protein n=1 Tax=Plesiocystis pacifica TaxID=191768 RepID=UPI0012FCF1D2)

HSP 1 Score: 74.3 bits (181), Expect = 3.920e-13
Identity = 42/143 (29.37%), Postives = 79/143 (55.24%), Query Frame = 1
Query:   70 AYTWMRQSLHEYAYMYRESAEVLMEKACNAPGLLNVHAIPAVYLFRHFVELSLKDLLVQTGRLNDKTESYPDKHRLEPLWQKLRALLDEADLGDSDDDRATLDVVDDLIRQLDTADPSAMAFRYPLGTQRRDGTREGLLSDNV 498
            AY     S   YA  ++ +A++L+++A +   +++    P  +L+RH++EL+LK L  Q  +L+      PD H++ PLW+ +R  +D    GD+    A LD V++ +R+ D  D  ++ FRYP     + G+ E  + +++
Sbjct:   26 AYLHRGGSFWGYALGFKSAADILVQQAVDGGAVIDSVVYPICFLYRHYIELTLKALAKQAAQLSSTPGREPD-HKIIPLWKTIRKAVDTG--GDT----ADLDAVEETLREWDRYDRGSLTFRYPT----KKGSEETTIPEDL 157          
BLAST of mRNA_P-wetherbeei_contig15255.1.1 vs. uniprot
Match: A0A532URJ1_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium B3_Pla TaxID=2012488 RepID=A0A532URJ1_9BACT)

HSP 1 Score: 72.4 bits (176), Expect = 2.500e-12
Identity = 44/120 (36.67%), Postives = 61/120 (50.83%), Query Frame = 1
Query:  100 EYAYMYRESAEVLMEKACNAPGLLNVHAIPAVYLFRHFVELSLKDLLVQTGRLNDKTESYPDKHRLEPLWQKLRALLDEADLGDSDDDRATLDV-----VDDLIRQLDTADPSAMAFRYP 444
            + A  YRESA  L+E++      L+VH   AV+L+RH VEL LKDL+  +  L    + YP  H L  LW  LR  +D     D   D   LD      V  L+ ++   DP + ++RYP
Sbjct:   29 QLARYYRESANELLERSVKNTSKLDVHIYSAVFLYRHSVELFLKDLIWASNCLLGNGKPYPKIHNLVKLWNDLRPKIDLLWKSDGPVDSEPLDKKQLRDVKKLLEEITEYDPESFSWRYP 148          
BLAST of mRNA_P-wetherbeei_contig15255.1.1 vs. uniprot
Match: UPI0019C13E5E (Uncharacterized protein n=1 Tax=Undibacterium sp. TaxID=1914977 RepID=UPI0019C13E5E)

HSP 1 Score: 72.4 bits (176), Expect = 2.640e-12
Identity = 45/151 (29.80%), Postives = 76/151 (50.33%), Query Frame = 1
Query:    4 GDEYTWPEAGGAFFTFKRTRD-DAYTWMRQSLHEYAYMYRESAEVLMEKACNAPGLLNVHAI--PAVYLFRHFVELSLKDLLVQTGRLNDKTESYPDKHRLEPLWQKLRALLDEADLGDSDDDRATLDVVDDLIRQLDTADPSAMAFRYPL 447
            G ++ WP+ G    +       +A+   R  L  +   Y+ +A+++ ++  + P    +  +  P V+L+RH+VEL LKD++     L      YP  H L  LW+  R  L+  + G SD+   TL  + ++I QLD  DP +  FRYP+
Sbjct:    8 GFDFPWPQKGDQLVSATGGHVLNAWFSGRTDLIAHIEGYKRAADLIWQQIESEPRAAGIDFLVFPMVFLYRHYVELCLKDIIAAGIYLEMGNGFYPATHNLGDLWKSAREYLERIEPGGSDE---TLASMTEMIAQLDQLDPGSFTFRYPI 155          
BLAST of mRNA_P-wetherbeei_contig15255.1.1 vs. uniprot
Match: A0A842VDM0_9ARCH (Uncharacterized protein n=1 Tax=Candidatus Lokiarchaeota archaeon TaxID=2053489 RepID=A0A842VDM0_9ARCH)

HSP 1 Score: 69.3 bits (168), Expect = 3.780e-11
Identity = 41/156 (26.28%), Postives = 79/156 (50.64%), Query Frame = 1
Query:   16 TWPEAGGAFFTFKRTRDDAYTWMRQSLHE---------YAYMYRESAEVLMEKACNAPGLLNVHAIPAVYLFRHFVELSLKDLLVQTGRLNDKTESYPDKHRLEPLWQKLRALLDEADLGDSDDDRATLDVVDDLIRQLDTADPSAMAFRYPLGTQ 456
            +WPE   + F+ ++       W + SL           Y   ++++ + L+E A +    +N    P ++L+RH++EL+LK++++   +  +K  +  + H L  LW + + L+ E DL   +D+   +  V++ I Q    D S+M FRYP+  Q
Sbjct:   12 SWPEKKKSIFSERKD-----WWNKASLEISSNTEGLAIYTQSFKDAGDRLVEYAQSDKTSINFLVFPILFLYRHYIELALKEIILSATQYLEKENNAINSHNLSHLWDETKKLISEVDLDIPEDE---IVAVENQIIQFHKLDMSSMTFRYPVDKQ 159          
BLAST of mRNA_P-wetherbeei_contig15255.1.1 vs. uniprot
Match: A0A848CYP6_ANEAE (Uncharacterized protein n=1 Tax=Aneurinibacillus aneurinilyticus TaxID=1391 RepID=A0A848CYP6_ANEAE)

HSP 1 Score: 68.9 bits (167), Expect = 6.660e-11
Identity = 44/153 (28.76%), Postives = 79/153 (51.63%), Query Frame = 1
Query:   13 YTWPEAGGAFFTFKRTRDDAYT-WMRQSLHEYAYM--YRESAEVLMEKACNAP--GLLNVHAIPAVYLFRHFVELSLKDLLVQTGR--LNDKTESYPD-KHRLEPLWQKLRALLDEADLGDSDDDRATLDVVDDLIRQLDTADPSAMAFRYPL 447
            ++WP+ G   F        A+  W     H + Y+  Y+E+A+ L+E A  +    +L+ +  P  +L+R F+ELS+KD+ +      + DK ++     H L+ +W +++ L+ E     + DD   ++VV+D I Q    D S+  FRYP+
Sbjct:    3 HSWPQKGEKLFKAGDYYQIAHIGWGSIDSHFHGYIRGYKEAADDLVELAIKSKRIAILDTYVFPITFLYRQFLELSMKDIYLNYSEHSVEDKVKNIKRISHNLKAIWNEIKPLIQEG--CTTSDDGEMIEVVEDYINQFHEFDKSSFRFRYPI 153          
BLAST of mRNA_P-wetherbeei_contig15255.1.1 vs. uniprot
Match: A0A1S1SZ87_9HYPH (Uncharacterized protein n=1 Tax=Rhizobium sp. LCM 4573 TaxID=1848291 RepID=A0A1S1SZ87_9HYPH)

HSP 1 Score: 67.8 bits (164), Expect = 1.810e-10
Identity = 50/141 (35.46%), Postives = 69/141 (48.94%), Query Frame = 1
Query:   97 HEYAYMYRESAEVLMEKACNAPGLLNVHAIPAVYLFRHFVELSLKDLLVQTGRLNDKT-----ESYPDKHRLEPLWQKLRALLDEAD--LGDSDDDRATLDVVDDLIRQLDTADPSAMAFRYPLGTQRRDGTREGLLSDNV 498
            H Y   +R +A  L E+ C  P   +    P VYL+RH VEL LKD+      L +++     E +  +H L  LW  +R +LD     +G      A LD +D  +RQL+  DP   +FRY    + RD TR  L SD V
Sbjct:   48 HAYKAGFRRAAFQLTERMCEQPVNQDSIVYPIVYLYRHHVELMLKDIFRLAADLLEESITGSQEKHLGRHDLAQLWGMVRPMLDPVCKLVGSDPLPSADLDGIDAYMRQLNVYDPRGESFRY---ARSRDATRT-LGSDLV 184          
BLAST of mRNA_P-wetherbeei_contig15255.1.1 vs. uniprot
Match: A0A0M6YBY9_9HYPH (Uncharacterized protein n=1 Tax=Roseibium aggregatum TaxID=187304 RepID=A0A0M6YBY9_9HYPH)

HSP 1 Score: 66.2 bits (160), Expect = 6.380e-10
Identity = 46/133 (34.59%), Postives = 64/133 (48.12%), Query Frame = 1
Query:   97 HEYAYMYRESAEVLMEKACNAPGLLNVHAIPAVYLFRHFVELSLKDLLVQTGRLNDKT-----ESYPDKHRLEPLWQKLRALLDEA--DLGDSDDDRATLDVVDDLIRQLDTADPSAMAFRYPLGTQRRDGTR 474
            H Y   +R +A  L E+ C  P   +    P VYL+RH VEL LKD+      L +K      E +  +H L  LW  +R +LD      G+S    A L+ +D  + QL+T DP   +FRY    + RD  R
Sbjct:   43 HAYKVGFRMAAFQLTERICEQPDNQDSLVYPIVYLYRHHVELMLKDIFHLAADLLEKPISNSQEKHLGRHELAKLWSMVRPMLDLVCEKGGESPLPAADLEGIDAYMDQLNTHDPRGESFRY---ARSRDAAR 172          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15255.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E0RVC1_9ACTN1.700e-11295.76Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A4V1B8E1_9HYPH8.530e-1633.77Uncharacterized protein n=1 Tax=Beijerinckiaceae b... [more]
A0A1E7HBV6_9DELT2.070e-1429.75Uncharacterized protein n=1 Tax=Desulfuromonadales... [more]
UPI0012FCF1D23.920e-1329.37hypothetical protein n=1 Tax=Plesiocystis pacifica... [more]
A0A532URJ1_9BACT2.500e-1236.67Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
UPI0019C13E5E2.640e-1229.80Uncharacterized protein n=1 Tax=Undibacterium sp. ... [more]
A0A842VDM0_9ARCH3.780e-1126.28Uncharacterized protein n=1 Tax=Candidatus Lokiarc... [more]
A0A848CYP6_ANEAE6.660e-1128.76Uncharacterized protein n=1 Tax=Aneurinibacillus a... [more]
A0A1S1SZ87_9HYPH1.810e-1035.46Uncharacterized protein n=1 Tax=Rhizobium sp. LCM ... [more]
A0A0M6YBY9_9HYPH6.380e-1034.59Uncharacterized protein n=1 Tax=Roseibium aggregat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15255contigP-wetherbeei_contig15255:319..904 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1221522.B723_06935
Model size586
Max annot lvl1236|Gammaproteobacteria
Exons1
Evalue1.08e-16
EggNOG OGs2DC1I@1|root,2ZCFR@2|Bacteria,1RBUV@1224|Proteobacteria,1S24Y@1236|Gammaproteobacteria
Cds size519
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186049.8272536-UTR-P-wetherbeei_contig15255:318..3851683186049.8272536-UTR-P-wetherbeei_contig15255:318..385Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15255 319..385 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186049.8412154-CDS-P-wetherbeei_contig15255:385..9041683186049.8412154-CDS-P-wetherbeei_contig15255:385..904Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15255 386..904 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15255.1.1prot_P-wetherbeei_contig15255.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15255 386..904 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15255.1.1

>prot_P-wetherbeei_contig15255.1.1 ID=prot_P-wetherbeei_contig15255.1.1|Name=mRNA_P-wetherbeei_contig15255.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=173bp
MGDEYTWPEAGGAFFTFKRTRDDAYTWMRQSLHEYAYMYRESAEVLMEKA
CNAPGLLNVHAIPAVYLFRHFVELSLKDLLVQTGRLNDKTESYPDKHRLE
PLWQKLRALLDEADLGDSDDDRATLDVVDDLIRQLDTADPSAMAFRYPLG
TQRRDGTREGLLSDNXXXXRNP*
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mRNA from alignment at P-wetherbeei_contig15255:319..904-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15255.1.1 ID=mRNA_P-wetherbeei_contig15255.1.1|Name=mRNA_P-wetherbeei_contig15255.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=586bp|location=Sequence derived from alignment at P-wetherbeei_contig15255:319..904- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCGACGAATACACCTGGCCTGAAGCAGGCGGAGCATTCTTCACGTT CAAGCGCACCCGTGACGACGCCTACACCTGGATGCGGCAGTCGCTGCACG AGTACGCCTACATGTACCGGGAGAGCGCAGAGGTCCTGATGGAGAAGGCG TGCAACGCGCCGGGGCTCCTGAACGTCCATGCCATTCCCGCCGTCTACCT GTTCCGGCACTTTGTGGAGCTGTCGCTCAAGGACCTGCTCGTGCAGACCG GTCGTCTGAACGACAAGACCGAGAGCTACCCCGACAAGCACCGTCTCGAA CCGCTGTGGCAGAAGCTGCGAGCACTGTTGGACGAAGCTGACCTGGGCGA TTCGGACGACGATCGAGCGACGCTCGACGTGGTGGACGATCTCATCCGGC AGCTCGACACCGCCGACCCCAGTGCAATGGCGTTCCGGTACCCCTTAGGC ACCCAGCGAAGGGACGGGACCCGCGAGGGTCTGCTCAGCGACAACGTNNN NNNNNNNCGAAATCCATGACGACCTCGCACGCGAATACCAAGACTCCCTT CGCGACGAGACCCGAGATTTCTGGGAGGACGAGTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15255:319..904-

>mRNA_P-wetherbeei_contig15255.1.1 ID=mRNA_P-wetherbeei_contig15255.1.1|Name=mRNA_P-wetherbeei_contig15255.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig15255:319..904- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCGACGAATACACCTGGCCTGAAGCAGGCGGAGCATTCTTCACGTT
CAAGCGCACCCGTGACGACGCCTACACCTGGATGCGGCAGTCGCTGCACG
AGTACGCCTACATGTACCGGGAGAGCGCAGAGGTCCTGATGGAGAAGGCG
TGCAACGCGCCGGGGCTCCTGAACGTCCATGCCATTCCCGCCGTCTACCT
GTTCCGGCACTTTGTGGAGCTGTCGCTCAAGGACCTGCTCGTGCAGACCG
GTCGTCTGAACGACAAGACCGAGAGCTACCCCGACAAGCACCGTCTCGAA
CCGCTGTGGCAGAAGCTGCGAGCACTGTTGGACGAAGCTGACCTGGGCGA
TTCGGACGACGATCGAGCGACGCTCGACGTGGTGGACGATCTCATCCGGC
AGCTCGACACCGCCGACCCCAGTGCAATGGCGTTCCGGTACCCCTTAGGC
ACCCAGCGAAGGGACGGGACCCGCGAGGGTCTGCTCAGCGACAACGTNNN
NNNNNNNCGAAATCCATGA
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