mRNA_P-wetherbeei_contig15198.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15198.1.1
Unique NamemRNA_P-wetherbeei_contig15198.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15198.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15198contigP-wetherbeei_contig15198:18..1223 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1206
Hectar predicted targeting categorysignal peptide
Exons1
Cds size720
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186047.677021-UTR-P-wetherbeei_contig15198:17..3511683186047.677021-UTR-P-wetherbeei_contig15198:17..351Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15198 18..351 -
1683186047.6973314-UTR-P-wetherbeei_contig15198:1071..12231683186047.6973314-UTR-P-wetherbeei_contig15198:1071..1223Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15198 1072..1223 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186047.6871295-CDS-P-wetherbeei_contig15198:351..10711683186047.6871295-CDS-P-wetherbeei_contig15198:351..1071Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15198 352..1071 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15198.1.1prot_P-wetherbeei_contig15198.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15198 352..1071 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15198.1.1

>prot_P-wetherbeei_contig15198.1.1 ID=prot_P-wetherbeei_contig15198.1.1|Name=mRNA_P-wetherbeei_contig15198.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=240bp
MAARGSGRRTEVAAGAAAAPAVAASVAVLAATLVGGGIAGARRRSTRSSI
THHRSNSRCSRRCSTSSNNTSSTNTSSTRSKRHTSILCLDTSSSTAGTSS
RRSSTDRTEARRGDVVRAAGRRGGGQVAVRIPAELAGEGGNSTKKFAMGK
WWRRWQQWLPECCRWLYTAHVILVAAGGGGCAVGMVHAAAAAATTVDTSR
GMQSVPLASRRRRAWRTGATCGSGGRFSGLAAREGLPPQ*
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mRNA from alignment at P-wetherbeei_contig15198:18..1223-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15198.1.1 ID=mRNA_P-wetherbeei_contig15198.1.1|Name=mRNA_P-wetherbeei_contig15198.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1206bp|location=Sequence derived from alignment at P-wetherbeei_contig15198:18..1223- (Phaeothamnion wetherbeei SAG_119_79)
TTCGATACAGCACTCGCAGCAGTTCTACCAGCCACATCTTATATCGCCGG
TGCTCTCGCCGTCACCGCCGCCGATGGCGTCACTGAACGGTAGCGGAGTG
GCGTCGCCCCTCTTGTCGCAATCCCCGCCGGGTCCGCAGGGACAGGCGGG
GTATGGCGGCACGGGGAAGCGGCCGGCGTACGGAGGTGGCAGCCGGAGCG
GCGGCGGCGCCGGCAGTGGCGGCGTCGGTGGCGGTGTTGGCGGCGACGCT
AGTGGGCGGCGGGATCGCGGGAGCACGCCGGCGCAGCACACGCAGCAGTA
TTACTCATCACCGCTCCAACAGCCGATGCAGCCGCCGCTGCAGCACCAGC
AGCAACAACACCAGCAGCACCAACACCAGCAGCACCCGCAGCAAGCGGCA
TACCAGCATCCTGTGCCTGGATACCAGCAGCAGTACGGCGGGTACGTCCA
GCCGCCGCTCCAGCACGGACCGCACTGAAGCAAGGCGGGGGGATGTTGTG
CGGGCGGCGGGGCGGCGGGGCGGCGGGCAAGTGGCTGTGCGCATCCCGGC
GGAACTCGCTGGGGAAGGCGGCAACAGCACAAAGAAGTTTGCGATGGGAA
AATGGTGGCGGCGGTGGCAGCAGTGGTTGCCAGAATGCTGCCGATGGCTG
TACACGGCGCATGTTATACTGGTGGCAGCGGGCGGAGGCGGCTGCGCTGT
GGGGATGGTTCATGCAGCGGCGGCGGCGGCGACGACGGTCGACACGAGCC
GTGGCATGCAAAGCGTGCCTCTGGCGAGCCGTCGGCGGAGGGCGTGGCGA
ACTGGCGCGACATGCGGCAGTGGCGGGCGGTTCAGCGGGCTGGCGGCCCG
CGAAGGATTGCCGCCGCAATAGGGGTTGGACGCCTGGGTGGTAGGTAAGT
TACGGCGGATCGCGGTGAAGCAGGAGGGATCGGGCCGGCAGGGCGGCCGC
ATCAATCTCAGCGATCTGACTGATTGCGACGCCGAAAGGACGGATGTGCG
CCGCACCTCATGGGTGGGACCAAACTCTTCCGGCAAGCGGCGCGGCGCCA
GGAAGAATGTAGAACTGCTGCGCTTTCTCATGCCGAGGATTGGAGCGGGC
AGGGCGGGCCGGTGCGGTGCCGGCGCGGCGCCGGTGCGGCGCTGCCGGTT
GGGCATATGGACGGGGGCGTAAACGGCAGTGCGGAAGTGGGGGGCTGGGC
AGGGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15198:18..1223-

>mRNA_P-wetherbeei_contig15198.1.1 ID=mRNA_P-wetherbeei_contig15198.1.1|Name=mRNA_P-wetherbeei_contig15198.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=720bp|location=Sequence derived from alignment at P-wetherbeei_contig15198:18..1223- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGCACGGGGAAGCGGCCGGCGTACGGAGGTGGCAGCCGGAGCGGC
GGCGGCGCCGGCAGTGGCGGCGTCGGTGGCGGTGTTGGCGGCGACGCTAG
TGGGCGGCGGGATCGCGGGAGCACGCCGGCGCAGCACACGCAGCAGTATT
ACTCATCACCGCTCCAACAGCCGATGCAGCCGCCGCTGCAGCACCAGCAG
CAACAACACCAGCAGCACCAACACCAGCAGCACCCGCAGCAAGCGGCATA
CCAGCATCCTGTGCCTGGATACCAGCAGCAGTACGGCGGGTACGTCCAGC
CGCCGCTCCAGCACGGACCGCACTGAAGCAAGGCGGGGGGATGTTGTGCG
GGCGGCGGGGCGGCGGGGCGGCGGGCAAGTGGCTGTGCGCATCCCGGCGG
AACTCGCTGGGGAAGGCGGCAACAGCACAAAGAAGTTTGCGATGGGAAAA
TGGTGGCGGCGGTGGCAGCAGTGGTTGCCAGAATGCTGCCGATGGCTGTA
CACGGCGCATGTTATACTGGTGGCAGCGGGCGGAGGCGGCTGCGCTGTGG
GGATGGTTCATGCAGCGGCGGCGGCGGCGACGACGGTCGACACGAGCCGT
GGCATGCAAAGCGTGCCTCTGGCGAGCCGTCGGCGGAGGGCGTGGCGAAC
TGGCGCGACATGCGGCAGTGGCGGGCGGTTCAGCGGGCTGGCGGCCCGCG
AAGGATTGCCGCCGCAATAG
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