mRNA_P-wetherbeei_contig15188.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15188.1.1
Unique NamemRNA_P-wetherbeei_contig15188.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15188.1.1 vs. uniprot
Match: D7G7T7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7T7_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 7.730e-37
Identity = 83/213 (38.97%), Postives = 125/213 (58.69%), Query Frame = 1 
Query:  151 RKPRWRWRADGLPDPEPALVLSGRPLLRAVAMMVIAYVVRPQRAAVARKAAARDRDRAECRAALALFLERCRPWALRQARVPL-TSLVNDAKLNLRL--------AAGGSSEGGGHSAGTGLGPFLRRRLALPSSRVASASEVSARLVRLKVHVRGIVDGVTREPLPAELRKFLVYLCTDGAYYPEGFLFRCEKERFEFSVLGATRRMLPEAD 762
            R+P+WRW A+G+ DP P  VL GR L +A A+++I + VRP+R  + RKA ++DRD  +  A L ++ +RC+ W L+ ARVP+  S++ ++ LN RL        A GG       +A  G    L R++A    R  S   ++  L+RLKVHV+G+++G+T+E  P ++  F  YL  DG Y+P+GF F  E +   F  LGA R + P  D
Sbjct:  106 RRPKWRWIAEGVHDPPPDRVLKGRHLWKAAALLIIVFFVRPKRTLMQRKARSKDRDTQDWNATLTIYFDRCQTWLLKAARVPVGNSVLKNSALNFRLNRRDGKREAFGGGGASXXXNARGGFVSALVRKVA----RGISHESLALTLMRLKVHVKGVLNGLTQEMPPTDIMTFFSYLAADGNYFPDGFFFEEETKMLAFDELGAVRNLTPNTD 314
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BLAST of mRNA_P-wetherbeei_contig15188.1.1 vs. uniprot
Match: A0A6H5KTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTT4_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 1.080e-36
Identity = 83/213 (38.97%), Postives = 128/213 (60.09%), Query Frame = 1 
Query:  151 RKPRWRWRADGLPDPEPALVLSGRPLLRAVAMMVIAYVVRPQRAAVARKAAARDRDRAECRAALALFLERCRPWALRQARVPL-TSLVNDAKLNLRL--------AAGGSSEGGGHSAGTGLGPFLRRRLALPSSRVASASEVSARLVRLKVHVRGIVDGVTREPLPAELRKFLVYLCTDGAYYPEGFLFRCEKERFEFSVLGATRRMLPEAD 762
            R+P+WRW A+G+ DP P  VL G+ L +A A+++I + VRP+R  + RKA ++DRD  +  A L ++ +RC+ W L+ ARVP+  S++ ++ LN RL        A GG++  GG +A  G    L R++A    R  +   ++  L+RLKVHV+G+++G+T+E  P ++  F  YL  DG Y+P+GF F  E     F  LGA R + P  D
Sbjct:  105 RRPKWRWIAEGVHDPPPDRVLKGKHLWKAAALLIIVFFVRPKRTLMQRKARSKDRDTQDWNATLTIYFDRCQTWLLKVARVPVGNSVLKNSALNFRLNRLDGKREAFGGAAASGGGNARGGFVSALVRKVA----RGINHENLALTLMRLKVHVKGVLNGLTQEMPPTDIMTFFSYLAADGNYFPDGFFFEKETNMLAFDELGAVRNLTPTTD 313
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BLAST of mRNA_P-wetherbeei_contig15188.1.1 vs. uniprot
Match: A0A836CDK1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDK1_9STRA)

HSP 1 Score: 145 bits (367), Expect = 1.750e-35
Identity = 113/313 (36.10%), Postives = 152/313 (48.56%), Query Frame = 1 
Query:  226 LLRAVAMMVIAYVVRPQRAAVARKAAARDRDRAECRAALALFLERCRPWALRQARVPLTSLVNDAKLNLRLAAGGSSEGGGHSAGTGLGPFLRRRLALPSSRVASASEVSARLVRLKVHVRGIVDGVTREPLPAELRKFLVYLCTDGAYYPEGFLFRCEKERFEFSVLGATRRML--------------------------------------------PEADTTAATITAAARQHAGSGRWYDLSRVEMLVADLLLVRVLIPGALLLPCAAGAQRGPGTKQQVAAHNARVLASEVYRVLRRVQRGLPPLPAA 1032
            L RA A++V+A+V RP+  A++RK+ +R +D  E  A LAL+  RCR WALR  R+PL+S + D  L+LR  A         +A          R  L +    +   +  R  +LKVHV+GI+DGVTREP P ++ KFL +L  DG YYPEGFLF  E  R  FS LGATR ++                                            P  +    +  A    H  +G  YD+S VEMLV + LLVR L+P A+L P  +G +R  G           VLAS VY +LR ++   P L AA
Sbjct:   73 LFRAAAIVVLAFVARPRLDALSRKSKSRTQDADEFAATLALYQGRCRAWALRATRLPLSSCLKDPSLSLRAGA--------TTAXXXXXXXXXXRRLLQAK---TGGSLELRHTKLKVHVKGIIDGVTREPPPHDIIKFLAFLIADGNYYPEGFLFPGECARMSFSPLGATRWIVRPAGSGDNGNGXXXXXXXXXXXXXXXXXXXRTTVKRGMRKTSLPPTLEIVRRSKKACTYVHGATGVAYDVSTVEMLVTNFLLVRQLLPWAVLYPWESGLKRLAG-----------VLASCVYMLLRPLR---PELAAA 360
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BLAST of mRNA_P-wetherbeei_contig15188.1.1 vs. uniprot
Match: A0A662XYK2_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XYK2_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.180e-11
Identity = 75/261 (28.74%), Postives = 119/261 (45.59%), Query Frame = 1 
Query:  334 AALALFLERCRPWALRQARVPLTSLVNDAKLNLRLA-----AGGSSEGGGHSAGTGLGPFLRRRLALPSSRVASASEVSARLVRLKVHVRGIVDG----VTREPLPAELRKFLVYLCTDGAYYPEGF----------LFRCEKERFEFSVLGATRRMLPEADTT---------AATITAAARQHAGS-GRWYDLSRVEMLVADLLLVRVLIPGALLLPCAAGAQRGPGTKQQVAAHNARVLASEVYRVLRRVQRGLPPLPA 1029
            A L ++ +  R W  +  R PL SL+ D  +++ ++     AG +  G         G  L RR   P++     +   A+L++LKV ++GI+D     + ++ +PA +  F   + TDG Y+P             LF  E++  EF  LGATRRM  E   +         A  +    ++   + G     SR ++++ + L VR+LIP  +L P   G       KQ  AA N   LA+ +Y V R+    L PLPA
Sbjct:   68 AVLQVYFDATRMWLGKVVRTPLLSLLQDPTVDVDISSKTGLAGSTLRGFAKK----FGGLLARRPVPPNTLSGDQAADPAKLLKLKVRLKGILDALAKAIEKKEVPAGILDFWKRMSTDGVYFPPSVMLVDAPEQYQLFPEERQALEFDALGATRRMQSEVSISMDKGDSIGDAEPVPDDGKEVLSTRGTRKAFSRFDIVMLNFLCVRILIPHVILTPWDVGVGSVGMGKQ--AAANLSSLATVLYLVCRQ----LSPLPA 318
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15188.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G7T7_ECTSI7.730e-3738.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTT4_9PHAE1.080e-3638.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CDK1_9STRA1.750e-3536.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A662XYK2_9STRA2.180e-1128.74Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15188contigP-wetherbeei_contig15188:277..1533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog157072.XP_008874265.1
Model size1065
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.1e-17
EggNOG OGs2CYYC@1|root,2S77R@2759|Eukaryota
Cds size1065
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186047.443943-CDS-P-wetherbeei_contig15188:276..7421683186047.443943-CDS-P-wetherbeei_contig15188:276..742Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15188 277..742 +
1683186047.454968-CDS-P-wetherbeei_contig15188:853..11431683186047.454968-CDS-P-wetherbeei_contig15188:853..1143Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15188 854..1143 +
1683186047.4642642-CDS-P-wetherbeei_contig15188:1224..15331683186047.4642642-CDS-P-wetherbeei_contig15188:1224..1533Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15188 1225..1533 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15188.1.1prot_P-wetherbeei_contig15188.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15188 277..1533 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15188.1.1

>prot_P-wetherbeei_contig15188.1.1 ID=prot_P-wetherbeei_contig15188.1.1|Name=mRNA_P-wetherbeei_contig15188.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=355bp
ATTTAAAVTTYGAADEDAEARWLRRDEERRRRRAAAITALSRRGGGEVPH
RKPRWRWRADGLPDPEPALVLSGRPLLRAVAMMVIAYVVRPQRAAVARKA
AARDRDRAECRAALALFLERCRPWALRQARVPLTSLVNDAKLNLRLAAGG
SSEGGGHSAGTGLGPFLRRRLALPSSRVASASEVSARLVRLKVHVRGIVD
GVTREPLPAELRKFLVYLCTDGAYYPEGFLFRCEKERFEFSVLGATRRML
PEADTTAATITAAARQHAGSGRWYDLSRVEMLVADLLLVRVLIPGALLLP
CAAGAQRGPGTKQQVAAHNARVLASEVYRVLRRVQRGLPPLPAASAAAAS
AAAAT
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mRNA from alignment at P-wetherbeei_contig15188:277..1533+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15188.1.1 ID=mRNA_P-wetherbeei_contig15188.1.1|Name=mRNA_P-wetherbeei_contig15188.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1257bp|location=Sequence derived from alignment at P-wetherbeei_contig15188:277..1533+ (Phaeothamnion wetherbeei SAG_119_79)
GCTACCACCACCGCCGCTGCTGTCACCACCTACGGCGCCGCCGACGAAGA
CGCCGAGGCGCGATGGCTGCGCCGCGATGAGGAGCGCCGCCGCCGCCGTG
CCGCCGCCATCACCGCCCTCTCCCGCCGCGGCGGCGGAGAGGTGCCACAC
CGCAAGCCACGCTGGAGGTGGCGCGCCGATGGCCTCCCCGACCCGGAACC
GGCGCTGGTCCTGTCCGGCCGGCCGCTGCTCCGCGCCGTCGCCATGATGG
TCATCGCCTACGTCGTCCGTCCGCAGCGAGCCGCCGTCGCTCGGAAGGCG
GCCGCGCGGGACCGCGACCGAGCCGAGTGCCGGGCGGCGCTGGCGCTCTT
CCTGGAGCGCTGTCGGCCGTGGGCGCTGCGCCAGGCACGCGTGCCGCTGA
CGTCGCTTGTGAACGACGCCAAGCTAAACTTGCGTCTTGCCGCCGGTGGC
AGTAGCGAAGGCGGCGGTGCTGGCGATAGCGGCGGGGACTCTGCTGAGGG
CGACGGTGGCGACTATGGAGATGGCGACGGCTACAGTGCCGATGCTGGCA
ACGACCGAAGCGGCGGAATCATCCAAGGCCATTCTGCGGGAACCGGGCTG
GGGCCTTTCCTCCGCCGCCGCTTGGCTCTGCCATCGTCGCGCGTCGCATC
GGCTTCCGAAGTCTCGGCGCGGCTGGTGCGCCTCAAGGTACACGTGCGCG
GCATCGTCGACGGCGTGACGCGAGAGCCGTTGCCTGCGGAGCTAAGAAAG
TTCCTCGTCTATCTGTGCACGGACGGTGCCTACTATCCCGAAGGCTTTCT
CTTCCGCTGCGAAAAGGAACGCTTTGAGTTTTCGGTGCTCGGGGCGACCC
GCCGCATGCTGCCAGAAGTGCCGACTCCACCACAGACTGCTGCAGCTGCC
CGCGCCTTGACCCGCGACCCGGCAAGCACCGGCGGCGGCTGGAACGAGGC
GGACACTACTGCGGCAACAATAACAGCGGCGGCGCGGCAACACGCCGGGT
CCGGTCGGTGGTACGACTTGAGCCGCGTGGAAATGCTTGTGGCGGACTTG
TTATTGGTGCGCGTCCTAATTCCGGGTGCGCTGCTGCTGCCGTGCGCCGC
CGGCGCCCAGCGCGGGCCGGGCACTAAGCAGCAGGTCGCGGCGCACAACG
CGAGGGTGCTGGCGTCGGAGGTCTACCGGGTGCTGCGGCGCGTCCAGCGT
GGGTTGCCGCCACTGCCGGCAGCATCCGCGGCGGCAGCATCTGCAGCGGC
GGCCACG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15188:277..1533+

>mRNA_P-wetherbeei_contig15188.1.1 ID=mRNA_P-wetherbeei_contig15188.1.1|Name=mRNA_P-wetherbeei_contig15188.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1065bp|location=Sequence derived from alignment at P-wetherbeei_contig15188:277..1533+ (Phaeothamnion wetherbeei SAG_119_79)
GCTACCACCACCGCCGCTGCTGTCACCACCTACGGCGCCGCCGACGAAGA
CGCCGAGGCGCGATGGCTGCGCCGCGATGAGGAGCGCCGCCGCCGCCGTG
CCGCCGCCATCACCGCCCTCTCCCGCCGCGGCGGCGGAGAGGTGCCACAC
CGCAAGCCACGCTGGAGGTGGCGCGCCGATGGCCTCCCCGACCCGGAACC
GGCGCTGGTCCTGTCCGGCCGGCCGCTGCTCCGCGCCGTCGCCATGATGG
TCATCGCCTACGTCGTCCGTCCGCAGCGAGCCGCCGTCGCTCGGAAGGCG
GCCGCGCGGGACCGCGACCGAGCCGAGTGCCGGGCGGCGCTGGCGCTCTT
CCTGGAGCGCTGTCGGCCGTGGGCGCTGCGCCAGGCACGCGTGCCGCTGA
CGTCGCTTGTGAACGACGCCAAGCTAAACTTGCGTCTTGCCGCCGGTGGC
AGTAGCGAAGGCGGCGGCCATTCTGCGGGAACCGGGCTGGGGCCTTTCCT
CCGCCGCCGCTTGGCTCTGCCATCGTCGCGCGTCGCATCGGCTTCCGAAG
TCTCGGCGCGGCTGGTGCGCCTCAAGGTACACGTGCGCGGCATCGTCGAC
GGCGTGACGCGAGAGCCGTTGCCTGCGGAGCTAAGAAAGTTCCTCGTCTA
TCTGTGCACGGACGGTGCCTACTATCCCGAAGGCTTTCTCTTCCGCTGCG
AAAAGGAACGCTTTGAGTTTTCGGTGCTCGGGGCGACCCGCCGCATGCTG
CCAGAAGCGGACACTACTGCGGCAACAATAACAGCGGCGGCGCGGCAACA
CGCCGGGTCCGGTCGGTGGTACGACTTGAGCCGCGTGGAAATGCTTGTGG
CGGACTTGTTATTGGTGCGCGTCCTAATTCCGGGTGCGCTGCTGCTGCCG
TGCGCCGCCGGCGCCCAGCGCGGGCCGGGCACTAAGCAGCAGGTCGCGGC
GCACAACGCGAGGGTGCTGGCGTCGGAGGTCTACCGGGTGCTGCGGCGCG
TCCAGCGTGGGTTGCCGCCACTGCCGGCAGCATCCGCGGCGGCAGCATCT
GCAGCGGCGGCCACG
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