mRNA_P-wetherbeei_contig15184.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15184.2.1
Unique NamemRNA_P-wetherbeei_contig15184.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15184.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15184contigP-wetherbeei_contig15184:376..1001 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size273
Hectar predicted targeting categoryother localisation
Exons2
Cds size249
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186047.319824-UTR-P-wetherbeei_contig15184:375..3991683186047.319824-UTR-P-wetherbeei_contig15184:375..399Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15184 376..399 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186047.3276951-CDS-P-wetherbeei_contig15184:399..5421683186047.3276951-CDS-P-wetherbeei_contig15184:399..542Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15184 400..542 +
1683186047.3358366-CDS-P-wetherbeei_contig15184:895..10011683186047.3358366-CDS-P-wetherbeei_contig15184:895..1001Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15184 896..1001 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15184.2.1prot_P-wetherbeei_contig15184.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15184 400..1001 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15184.2.1

>prot_P-wetherbeei_contig15184.2.1 ID=prot_P-wetherbeei_contig15184.2.1|Name=mRNA_P-wetherbeei_contig15184.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=83bp
MSGPWTAAAATTAAAKAAKPTAVPALGMPLPLKKPQRRVRRRRRQQSQLA
PIASTGGLPGAPIGCASAAAAAAAVAAAPSPG*
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mRNA from alignment at P-wetherbeei_contig15184:376..1001+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15184.2.1 ID=mRNA_P-wetherbeei_contig15184.2.1|Name=mRNA_P-wetherbeei_contig15184.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=626bp|location=Sequence derived from alignment at P-wetherbeei_contig15184:376..1001+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGCGGCGGCGGCCGCAGGGGCGATGTCGGGCCCATGGACTGCTGCTGC
TGCGACGACTGCAGCAGCGAAGGCAGCGAAGCCGACGGCGGTGCCGGCGC
TGGGAATGCCGCTGCCGTTGAAGAAACCGCAGCGGCGGGTGCGGCGACGG
CGGCGGCAGCAGTCGCAGTACTGCCTCGCATGTATTCGGAAAGTGTGCGT
CGCAGCTTTCTGCTCCTGCTCGATTTGCTGCCGCCACCCCCACCGCCGCC
GCCAACGCTACTGGTGCTGCCCGTGGTCTCGCGATGCTCACCGGCTTCGC
CACCGCTGAAACGGCCATCCAGTGTGTACCTTCGCCAGGTGTCGCTCCCC
GCCGATAGTGCTGCATCCCCGACGAATGTGAACCGGACGGCATACTGCAC
ATGACATGCATCGACGTCCATCGGTTCCATCAGCTCCGCCGACAGCACTT
CGATCGCCAGCGGCGCGCCGGGTGTCAGAGCACCGCCGCCGGCCCCCAGC
ATAACGGTCGCAAAGCGGAGGCTGGCGCCGATCGCATCCACGGGCGGGCT
TCCAGGTGCCCCGATCGGCTGCGCGTCAGCGGCGGCAGCAGCGGCGGCCG
TAGCTGCTGCCCCCTCCCCAGGGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15184:376..1001+

>mRNA_P-wetherbeei_contig15184.2.1 ID=mRNA_P-wetherbeei_contig15184.2.1|Name=mRNA_P-wetherbeei_contig15184.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=249bp|location=Sequence derived from alignment at P-wetherbeei_contig15184:376..1001+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGGGCCCATGGACTGCTGCTGCTGCGACGACTGCAGCAGCGAAGGC
AGCGAAGCCGACGGCGGTGCCGGCGCTGGGAATGCCGCTGCCGTTGAAGA
AACCGCAGCGGCGGGTGCGGCGACGGCGGCGGCAGCAGTCGCAGCTGGCG
CCGATCGCATCCACGGGCGGGCTTCCAGGTGCCCCGATCGGCTGCGCGTC
AGCGGCGGCAGCAGCGGCGGCCGTAGCTGCTGCCCCCTCCCCAGGGTGA
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