mRNA_P-wetherbeei_contig1518.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1518.1.1
Unique NamemRNA_P-wetherbeei_contig1518.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1518.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1518contigP-wetherbeei_contig1518:5..2209 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1976
Hectar predicted targeting categoryother localisation
Exons2
Cds size1974
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186047.1858256-CDS-P-wetherbeei_contig1518:6..2021683186047.1858256-CDS-P-wetherbeei_contig1518:6..202Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1518 7..202 -
1683186047.1935744-CDS-P-wetherbeei_contig1518:431..22091683186047.1935744-CDS-P-wetherbeei_contig1518:431..2209Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1518 432..2209 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1518.1.1prot_P-wetherbeei_contig1518.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1518 7..2209 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1518.1.1

>prot_P-wetherbeei_contig1518.1.1 ID=prot_P-wetherbeei_contig1518.1.1|Name=mRNA_P-wetherbeei_contig1518.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=658bp
RFAAIASNNDVPQGMSLFASQRRMRFAFTDGDPSLEGLAKGGDENALPCP
SPWRPGKLGGASHSARTLGNDRQHGSRESKSYERTDSPDFHPALSGFHLE
RSDGGDGFGAPAAGPPPSPFGRNSGNNARDLPAFPFSPRRSPRAAARKRH
VLASPIFETEAQRAAPEEKPGPTRMGWVSPRGQSAMPRSPAAVSGRSSNR
ASTSALQAAVPLSTASCVGDGASASAAKPGQAAAVPPTLARSAGSTRTSK
LGAREARAANGDTATASAVAVAEPLAATPLGRSPSSRSARSAALFGSAIL
AVPEMAPADAATAAVTAGPTQAEASAKTTNSSASAVKKAGTRPAYLAAAA
TASLAGHAANQNTFALANGERLRWSGGVPGAAKAGKGRRANSGPSITPED
VPAAAAAFQPGGPAPMETGSTIVRPQRCQALPAATVPPLLMPMRPSPLSQ
AEDAALQSSPDCHAETGQSSATSKEPWNVLLDDAVPMLPSPLSPQQQGQQ
LLLLPQSSPPAAEHDGDVVTAALPSASTDVEAARAVAAVAVSRVSCYSGE
DFTVAAAAENLGAASAALHAAQAAAASWEARAKDLENKLLVAWSSAQLSA
DEARQSERAIWTAGLDVALAPIITSGNRGASAADGEAARALLSRIGQFCE
SVAGLTLG
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mRNA from alignment at P-wetherbeei_contig1518:5..2209-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1518.1.1 ID=mRNA_P-wetherbeei_contig1518.1.1|Name=mRNA_P-wetherbeei_contig1518.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2205bp|location=Sequence derived from alignment at P-wetherbeei_contig1518:5..2209- (Phaeothamnion wetherbeei SAG_119_79)
CGATTCGCAGCCATCGCGTCAAACAACGACGTGCCCCAAGGGATGTCGCT
TTTCGCCTCGCAGCGGCGCATGCGCTTTGCATTCACAGACGGCGATCCTT
CCCTAGAGGGCCTCGCGAAAGGCGGCGACGAAAATGCGCTGCCTTGCCCG
TCCCCGTGGCGGCCTGGAAAGCTCGGGGGCGCTTCTCATTCTGCGAGGAC
CTTGGGAAACGACAGGCAACACGGCAGTCGTGAATCGAAAAGCTACGAGC
GGACAGACAGCCCCGATTTTCATCCCGCGTTGTCTGGCTTTCATCTAGAG
CGAAGCGATGGAGGCGATGGTTTTGGCGCACCAGCAGCCGGGCCGCCGCC
ATCTCCGTTTGGCAGGAACTCGGGCAACAACGCGCGAGACTTACCAGCTT
TTCCTTTCAGTCCGCGACGAAGCCCGCGAGCCGCGGCGCGGAAACGCCAC
GTGCTGGCATCGCCGATCTTCGAGACAGAGGCGCAGAGAGCTGCTCCAGA
GGAGAAGCCGGGACCGACGCGGATGGGGTGGGTATCTCCACGGGGGCAGT
CGGCAATGCCACGCTCGCCCGCAGCTGTGTCAGGTCGGTCCTCCAACCGG
GCTTCCACCTCGGCGCTGCAGGCTGCGGTACCTCTGTCTACTGCTTCCTG
CGTCGGCGACGGCGCCTCAGCCTCGGCTGCCAAGCCGGGGCAGGCTGCAG
CCGTGCCGCCAACACTGGCGAGGTCTGCTGGAAGCACCCGCACGTCAAAA
CTGGGTGCCAGAGAAGCACGCGCGGCGAACGGCGACACGGCAACGGCGTC
GGCGGTTGCTGTGGCAGAACCTTTGGCAGCCACGCCGCTAGGGCGCTCTC
CGAGCAGTCGATCCGCACGATCCGCCGCCTTGTTCGGCAGTGCGATTCTG
GCTGTCCCAGAGATGGCGCCAGCGGACGCCGCGACGGCAGCAGTGACGGC
GGGGCCGACGCAAGCAGAAGCTTCAGCGAAGACGACAAATTCCTCGGCAT
CTGCGGTGAAGAAGGCCGGCACCCGGCCGGCATATTTGGCGGCAGCGGCG
ACCGCTAGTTTGGCCGGCCACGCTGCGAATCAAAACACTTTCGCGCTTGC
GAACGGTGAACGTCTGCGGTGGAGCGGCGGCGTCCCCGGGGCGGCTAAAG
CTGGGAAGGGACGGCGGGCGAACAGTGGGCCCAGCATCACCCCGGAGGAC
GTGCCTGCAGCGGCAGCAGCTTTCCAGCCCGGAGGCCCGGCTCCGATGGA
GACAGGATCCACAATTGTTCGGCCGCAACGGTGTCAAGCACTGCCTGCGG
CGACGGTGCCGCCGCTGCTGATGCCGATGCGGCCGTCACCGCTGTCACAA
GCGGAGGATGCAGCCCTGCAGTCATCACCGGACTGTCACGCCGAGACGGG
CCAGAGCAGTGCGACCTCCAAAGAGCCTTGGAACGTGCTGCTGGACGATG
CGGTGCCAATGTTGCCGTCGCCGCTGTCGCCACAGCAGCAGGGGCAGCAG
CTTCTCCTCCTTCCACAGAGCTCTCCTCCTGCGGCAGAGCACGATGGCGA
CGTCGTGACGGCAGCGTTGCCGTCTGCGTCTACTGATGTCGAGGCGGCGC
GGGCCGTGGCGGCGGTCGCGGTGTCACGAGTGAGCTGCTACTCAGGAGAG
GATTTCACAGTGGCGGCGGCGGCGGAAAATCTCGGCGCGGCGTCGGCGGC
GCTACACGCAGCGCAGGCGGCGGCGGCATCGTGGGAGGCGCGCGCGAAGG
ACTTGGAGAACAAGCTTCTGGTAGCATGGTGAGATACTTAGGGGACCCTT
TTCTCATGGTGTCTTTCCGTGCACCGGAACCACAACGGCAAAAGCGTGCA
AAAGTCTTCTCCGTTTTAAGCTCCGAAGGTGCATGAATTGAATCTTACGG
TATTATGCTCTGGTTCCGAAAGCGTCTTCCTTTTTTGGGGGGGAGGGGTT
GGCAAGCGCTTTTGCCCACTTTTCCCTCTTTCTTAAATCTGCTGATGACG
GTGATAGGTCGTCGGCGCAGCTTAGCGCTGATGAGGCGCGGCAGTCGGAA
CGGGCGATCTGGACGGCGGGGCTGGATGTTGCCTTGGCGCCCATTATTAC
CAGCGGCAACCGAGGCGCATCGGCGGCAGATGGCGAAGCGGCGCGGGCGC
TGCTGTCGCGTATCGGCCAATTTTGCGAATCGGTGGCGGGGCTGACGCTG
GGCTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1518:5..2209-

>mRNA_P-wetherbeei_contig1518.1.1 ID=mRNA_P-wetherbeei_contig1518.1.1|Name=mRNA_P-wetherbeei_contig1518.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1974bp|location=Sequence derived from alignment at P-wetherbeei_contig1518:5..2209- (Phaeothamnion wetherbeei SAG_119_79)
CGATTCGCAGCCATCGCGTCAAACAACGACGTGCCCCAAGGGATGTCGCT
TTTCGCCTCGCAGCGGCGCATGCGCTTTGCATTCACAGACGGCGATCCTT
CCCTAGAGGGCCTCGCGAAAGGCGGCGACGAAAATGCGCTGCCTTGCCCG
TCCCCGTGGCGGCCTGGAAAGCTCGGGGGCGCTTCTCATTCTGCGAGGAC
CTTGGGAAACGACAGGCAACACGGCAGTCGTGAATCGAAAAGCTACGAGC
GGACAGACAGCCCCGATTTTCATCCCGCGTTGTCTGGCTTTCATCTAGAG
CGAAGCGATGGAGGCGATGGTTTTGGCGCACCAGCAGCCGGGCCGCCGCC
ATCTCCGTTTGGCAGGAACTCGGGCAACAACGCGCGAGACTTACCAGCTT
TTCCTTTCAGTCCGCGACGAAGCCCGCGAGCCGCGGCGCGGAAACGCCAC
GTGCTGGCATCGCCGATCTTCGAGACAGAGGCGCAGAGAGCTGCTCCAGA
GGAGAAGCCGGGACCGACGCGGATGGGGTGGGTATCTCCACGGGGGCAGT
CGGCAATGCCACGCTCGCCCGCAGCTGTGTCAGGTCGGTCCTCCAACCGG
GCTTCCACCTCGGCGCTGCAGGCTGCGGTACCTCTGTCTACTGCTTCCTG
CGTCGGCGACGGCGCCTCAGCCTCGGCTGCCAAGCCGGGGCAGGCTGCAG
CCGTGCCGCCAACACTGGCGAGGTCTGCTGGAAGCACCCGCACGTCAAAA
CTGGGTGCCAGAGAAGCACGCGCGGCGAACGGCGACACGGCAACGGCGTC
GGCGGTTGCTGTGGCAGAACCTTTGGCAGCCACGCCGCTAGGGCGCTCTC
CGAGCAGTCGATCCGCACGATCCGCCGCCTTGTTCGGCAGTGCGATTCTG
GCTGTCCCAGAGATGGCGCCAGCGGACGCCGCGACGGCAGCAGTGACGGC
GGGGCCGACGCAAGCAGAAGCTTCAGCGAAGACGACAAATTCCTCGGCAT
CTGCGGTGAAGAAGGCCGGCACCCGGCCGGCATATTTGGCGGCAGCGGCG
ACCGCTAGTTTGGCCGGCCACGCTGCGAATCAAAACACTTTCGCGCTTGC
GAACGGTGAACGTCTGCGGTGGAGCGGCGGCGTCCCCGGGGCGGCTAAAG
CTGGGAAGGGACGGCGGGCGAACAGTGGGCCCAGCATCACCCCGGAGGAC
GTGCCTGCAGCGGCAGCAGCTTTCCAGCCCGGAGGCCCGGCTCCGATGGA
GACAGGATCCACAATTGTTCGGCCGCAACGGTGTCAAGCACTGCCTGCGG
CGACGGTGCCGCCGCTGCTGATGCCGATGCGGCCGTCACCGCTGTCACAA
GCGGAGGATGCAGCCCTGCAGTCATCACCGGACTGTCACGCCGAGACGGG
CCAGAGCAGTGCGACCTCCAAAGAGCCTTGGAACGTGCTGCTGGACGATG
CGGTGCCAATGTTGCCGTCGCCGCTGTCGCCACAGCAGCAGGGGCAGCAG
CTTCTCCTCCTTCCACAGAGCTCTCCTCCTGCGGCAGAGCACGATGGCGA
CGTCGTGACGGCAGCGTTGCCGTCTGCGTCTACTGATGTCGAGGCGGCGC
GGGCCGTGGCGGCGGTCGCGGTGTCACGAGTGAGCTGCTACTCAGGAGAG
GATTTCACAGTGGCGGCGGCGGCGGAAAATCTCGGCGCGGCGTCGGCGGC
GCTACACGCAGCGCAGGCGGCGGCGGCATCGTGGGAGGCGCGCGCGAAGG
ACTTGGAGAACAAGCTTCTGGTAGCATGGTCGTCGGCGCAGCTTAGCGCT
GATGAGGCGCGGCAGTCGGAACGGGCGATCTGGACGGCGGGGCTGGATGT
TGCCTTGGCGCCCATTATTACCAGCGGCAACCGAGGCGCATCGGCGGCAG
ATGGCGAAGCGGCGCGGGCGCTGCTGTCGCGTATCGGCCAATTTTGCGAA
TCGGTGGCGGGGCTGACGCTGGGC
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