mRNA_P-wetherbeei_contig15168.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15168.1.1
Unique NamemRNA_P-wetherbeei_contig15168.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15168.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15168contigP-wetherbeei_contig15168:2..1639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1638
Hectar predicted targeting categoryother localisation
Exons1
Cds size1308
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186046.8005576-UTR-P-wetherbeei_contig15168:1..2401683186046.8005576-UTR-P-wetherbeei_contig15168:1..240Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15168 2..240 -
1683186046.8158944-UTR-P-wetherbeei_contig15168:1548..16391683186046.8158944-UTR-P-wetherbeei_contig15168:1548..1639Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15168 1549..1639 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186046.808797-CDS-P-wetherbeei_contig15168:240..15481683186046.808797-CDS-P-wetherbeei_contig15168:240..1548Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15168 241..1548 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15168.1.1prot_P-wetherbeei_contig15168.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15168 241..1548 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15168.1.1

>prot_P-wetherbeei_contig15168.1.1 ID=prot_P-wetherbeei_contig15168.1.1|Name=mRNA_P-wetherbeei_contig15168.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=436bp
MAMAPQTAATPAPTTSQPALAAAGGFGLNTTARSFVPGGSAAAATAPGIP
GVPGKPSAAPSPPPPGGPAVAEAKEAGGSEGKVAQRAFKSQGGPMGAGGH
KLAGAGAGAGGLLPSPIPAIVAGTDGGAGTAAKDSGDIAAPALAPAPAPI
MAAALAPAATYAPPATFGFGALAEPVPTTIAPGLPSPAPLASQFGQVTAA
ATTTVTQAAQAVGTPEIVATPAAAPSEGTGTGTVGGVGIFGAGAPSQDHL
ALKMAQRAQRFAGAPRMMSPQMAALLVQAPAAATPVAALAPAPTAAVTAP
PALVGAAAATRADASAPVLRLKRPAPTTEGESGEAPAKTARTDDTDGGGG
GGGGCRGSGANGGGGSTGGSSASTEAMEVVDSQPEATSGGSSGVGARNTA
EGAEEGKPADGGGSAAGVGGTPSGGGDGTDGSAST*
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mRNA from alignment at P-wetherbeei_contig15168:2..1639-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15168.1.1 ID=mRNA_P-wetherbeei_contig15168.1.1|Name=mRNA_P-wetherbeei_contig15168.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1638bp|location=Sequence derived from alignment at P-wetherbeei_contig15168:2..1639- (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCTCCGACGGCGGCGGCTCCGACGGCGGCGGCTCCGACGGCGGCGG
CTGCGGCGGCTGCAACAGCGCCGGCGCCCGCCGTGTCTTTTATGGCGATG
GCGCCTCAAACAGCGGCGACGCCGGCGCCGACGACGAGCCAGCCGGCCCT
TGCGGCTGCGGGCGGGTTCGGCTTGAACACGACCGCTCGGTCGTTCGTGC
CTGGCGGCTCCGCGGCGGCGGCGACAGCGCCGGGAATTCCGGGAGTGCCG
GGAAAACCGTCGGCAGCGCCGTCGCCGCCCCCGCCTGGTGGGCCTGCGGT
CGCCGAGGCGAAGGAGGCGGGTGGCAGCGAAGGGAAAGTCGCGCAGCGGG
CCTTCAAATCGCAGGGCGGTCCCATGGGCGCTGGCGGCCACAAGCTGGCC
GGCGCTGGCGCCGGAGCAGGCGGCCTGCTGCCTTCACCCATCCCCGCCAT
CGTGGCCGGCACGGACGGCGGTGCCGGCACGGCTGCCAAGGACAGTGGCG
ACATCGCAGCGCCCGCGCTCGCGCCGGCGCCGGCACCAATCATGGCGGCC
GCGCTGGCTCCAGCCGCCACATACGCACCGCCGGCCACTTTCGGCTTCGG
AGCGCTAGCGGAGCCGGTGCCGACGACAATCGCCCCGGGGCTGCCGTCAC
CAGCCCCCTTGGCGTCGCAGTTCGGCCAAGTAACGGCGGCAGCAACGACC
ACGGTGACCCAGGCGGCGCAGGCCGTAGGGACCCCAGAGATTGTTGCGAC
GCCCGCGGCAGCGCCCTCTGAAGGCACCGGCACCGGTACAGTTGGCGGCG
TCGGCATTTTCGGCGCCGGCGCCCCCAGCCAGGATCATCTTGCGCTGAAG
ATGGCGCAGCGCGCGCAGCGCTTCGCAGGCGCCCCTCGCATGATGTCGCC
GCAGATGGCGGCGCTGCTGGTGCAGGCGCCGGCGGCAGCCACGCCAGTCG
CGGCCCTGGCGCCGGCGCCGACGGCCGCCGTGACGGCACCTCCTGCTCTT
GTTGGTGCCGCTGCTGCGACGAGGGCGGACGCCTCGGCCCCCGTGCTGCG
CCTCAAGCGCCCGGCACCGACGACCGAAGGCGAATCCGGCGAAGCGCCGG
CCAAGACGGCGCGTACCGACGATACAGACGGCGGCGGCGGCGGTGGCGGT
GGCTGTCGCGGCAGTGGCGCCAACGGCGGCGGGGGCAGCACTGGTGGCAG
CAGCGCGTCTACTGAGGCAATGGAGGTGGTGGACTCTCAGCCGGAGGCCA
CCAGCGGGGGCAGCAGCGGCGTAGGCGCGAGGAATACGGCAGAGGGAGCT
GAAGAGGGCAAGCCGGCCGACGGTGGTGGCAGTGCCGCCGGTGTTGGCGG
TACGCCTAGTGGTGGCGGCGATGGCACTGATGGGAGTGCGTCGACCTGAG
TTCGCCATTCGTGGCGTCGTCGAGGGCGGCGACCGCGGCAGAAAAGCCGG
CGCCATTGGCAGTTACGGCAGCGGCCATGTCAGCGGCTGGGAACGCGCGA
AGGAGTCTTGTCACGGAGGCGGCGGGTGCGAGTTGGACGACGGCGGCAGA
CGCGGTGCTTGCAGCGACAGCGCCGCTGCCGTCGCCGCTGACGGCAGCAT
AAGGCGGGTGTGTCACGCGGAATGGGAATCCTGGCGGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15168:2..1639-

>mRNA_P-wetherbeei_contig15168.1.1 ID=mRNA_P-wetherbeei_contig15168.1.1|Name=mRNA_P-wetherbeei_contig15168.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1308bp|location=Sequence derived from alignment at P-wetherbeei_contig15168:2..1639- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGATGGCGCCTCAAACAGCGGCGACGCCGGCGCCGACGACGAGCCA
GCCGGCCCTTGCGGCTGCGGGCGGGTTCGGCTTGAACACGACCGCTCGGT
CGTTCGTGCCTGGCGGCTCCGCGGCGGCGGCGACAGCGCCGGGAATTCCG
GGAGTGCCGGGAAAACCGTCGGCAGCGCCGTCGCCGCCCCCGCCTGGTGG
GCCTGCGGTCGCCGAGGCGAAGGAGGCGGGTGGCAGCGAAGGGAAAGTCG
CGCAGCGGGCCTTCAAATCGCAGGGCGGTCCCATGGGCGCTGGCGGCCAC
AAGCTGGCCGGCGCTGGCGCCGGAGCAGGCGGCCTGCTGCCTTCACCCAT
CCCCGCCATCGTGGCCGGCACGGACGGCGGTGCCGGCACGGCTGCCAAGG
ACAGTGGCGACATCGCAGCGCCCGCGCTCGCGCCGGCGCCGGCACCAATC
ATGGCGGCCGCGCTGGCTCCAGCCGCCACATACGCACCGCCGGCCACTTT
CGGCTTCGGAGCGCTAGCGGAGCCGGTGCCGACGACAATCGCCCCGGGGC
TGCCGTCACCAGCCCCCTTGGCGTCGCAGTTCGGCCAAGTAACGGCGGCA
GCAACGACCACGGTGACCCAGGCGGCGCAGGCCGTAGGGACCCCAGAGAT
TGTTGCGACGCCCGCGGCAGCGCCCTCTGAAGGCACCGGCACCGGTACAG
TTGGCGGCGTCGGCATTTTCGGCGCCGGCGCCCCCAGCCAGGATCATCTT
GCGCTGAAGATGGCGCAGCGCGCGCAGCGCTTCGCAGGCGCCCCTCGCAT
GATGTCGCCGCAGATGGCGGCGCTGCTGGTGCAGGCGCCGGCGGCAGCCA
CGCCAGTCGCGGCCCTGGCGCCGGCGCCGACGGCCGCCGTGACGGCACCT
CCTGCTCTTGTTGGTGCCGCTGCTGCGACGAGGGCGGACGCCTCGGCCCC
CGTGCTGCGCCTCAAGCGCCCGGCACCGACGACCGAAGGCGAATCCGGCG
AAGCGCCGGCCAAGACGGCGCGTACCGACGATACAGACGGCGGCGGCGGC
GGTGGCGGTGGCTGTCGCGGCAGTGGCGCCAACGGCGGCGGGGGCAGCAC
TGGTGGCAGCAGCGCGTCTACTGAGGCAATGGAGGTGGTGGACTCTCAGC
CGGAGGCCACCAGCGGGGGCAGCAGCGGCGTAGGCGCGAGGAATACGGCA
GAGGGAGCTGAAGAGGGCAAGCCGGCCGACGGTGGTGGCAGTGCCGCCGG
TGTTGGCGGTACGCCTAGTGGTGGCGGCGATGGCACTGATGGGAGTGCGT
CGACCTGA
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