mRNA_P-wetherbeei_contig15142.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15142.1.1
Unique NamemRNA_P-wetherbeei_contig15142.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15142.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15142contigP-wetherbeei_contig15142:497..1598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1102
Hectar predicted targeting categoryother localisation
Exons1
Cds size582
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186046.2699509-UTR-P-wetherbeei_contig15142:496..10161683186046.2699509-UTR-P-wetherbeei_contig15142:496..1016Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15142 497..1016 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186046.2783499-CDS-P-wetherbeei_contig15142:1016..15981683186046.2783499-CDS-P-wetherbeei_contig15142:1016..1598Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15142 1017..1598 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15142.1.1prot_P-wetherbeei_contig15142.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15142 1017..1598 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15142.1.1

>prot_P-wetherbeei_contig15142.1.1 ID=prot_P-wetherbeei_contig15142.1.1|Name=mRNA_P-wetherbeei_contig15142.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=194bp
GKVWKGAHSSYGRRSCTQKKKLCRDKIKRPCSNETRPSPRNNAKASQLTL
SRKLESTSLTQSTTESRSAAQSSPVAYSAQSSTAARRSNVFLPPRLRGGS
HYFFRLSRDSDAPSDRVADRGAYFRSDVEPFPGGVQRPRSGRDLRADGGA
FPNADLLGQQHQPLGSAQRGGYMGSLPEQPVISVMPCRLRLFL*
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mRNA from alignment at P-wetherbeei_contig15142:497..1598-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15142.1.1 ID=mRNA_P-wetherbeei_contig15142.1.1|Name=mRNA_P-wetherbeei_contig15142.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1102bp|location=Sequence derived from alignment at P-wetherbeei_contig15142:497..1598- (Phaeothamnion wetherbeei SAG_119_79)
GGAAAAGTCTGGAAAGGTGCCCATTCTTCTTATGGCCGAAGAAGTTGCAC
GCAAAAAAAGAAATTGTGCAGAGACAAAATAAAGCGACCATGCAGTAACG
AAACCCGACCGAGCCCAAGAAATAACGCGAAGGCCTCACAGCTCACACTC
TCGAGGAAGCTGGAAAGCACCAGCCTCACTCAGTCCACCACGGAATCTCG
GAGCGCAGCGCAGTCCAGTCCAGTAGCATACTCAGCACAGAGCAGTACAG
CAGCGCGCCGCAGCAATGTATTTCTTCCTCCGCGTCTTCGTGGCGGCAGT
CATTATTTTTTCAGGTTGTCGCGTGACAGCGACGCACCTTCGGACCGGGT
CGCCGACCGCGGCGCCTACTTTCGCTCCGACGTCGAGCCCTTCCCGGGCG
GCGTACAGCGTCCAAGATCAGGACGAGACCTACGCGCCGACGGCGGCGCC
TTCCCCAATGCCGACCTATTGGGACAACAGCACCAGCCCCTCGGCAGCGC
CCAGCGCGGCGGGTACATGGGCTCCCTCCCTGAACAACCCGTGATTTCGG
TGATGCCGTGTCGCCTCCGTTTATTTCTCTGACTGGGGCGGCCGTGCCGC
CACTGTTTCCTGAAGTCACGGTTGCATGCAGCGCAAGGCGATAATTGGCG
GGGAAAGCGGCGCGTTCCAGTGCGGCGCTTCCCGGCGCTTCGAGGCCAAG
ATGGCGGCGACGGCGCTGAAATCACCATGGATGTGACCACCTTAGACACG
GAACTGGAGGCAAGCTAATGTGGAGCTAATGGATGCCGATACGAAGAAAG
GCGGCTCACGGCACCGCCGCGCCAGGCAGGGAGGAGGCAGAAGAGTGCGG
CACGCGCAACTTACTTCGGGGCATTTTTTGTTTTAGCTACACGGACGGGC
GCAGGAACGCTTGTGTGGAAAGCATGGCTCGGAACGGGGAGAAGAGATCC
CTAGGTAGGACCACCACATCTGTCGCACGCGCGCGGGAAGGGAGGGCTGA
CAGGGTGCGGGTAGGCGGCAACGCAAAGGTGGGAGGGCGTGCCGGCAGAG
CAAGGTCAGGTGGGAGCTCGGCACGTGGGTCATATGTGCAGCATATCACA
TC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15142:497..1598-

>mRNA_P-wetherbeei_contig15142.1.1 ID=mRNA_P-wetherbeei_contig15142.1.1|Name=mRNA_P-wetherbeei_contig15142.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=582bp|location=Sequence derived from alignment at P-wetherbeei_contig15142:497..1598- (Phaeothamnion wetherbeei SAG_119_79)
GGAAAAGTCTGGAAAGGTGCCCATTCTTCTTATGGCCGAAGAAGTTGCAC
GCAAAAAAAGAAATTGTGCAGAGACAAAATAAAGCGACCATGCAGTAACG
AAACCCGACCGAGCCCAAGAAATAACGCGAAGGCCTCACAGCTCACACTC
TCGAGGAAGCTGGAAAGCACCAGCCTCACTCAGTCCACCACGGAATCTCG
GAGCGCAGCGCAGTCCAGTCCAGTAGCATACTCAGCACAGAGCAGTACAG
CAGCGCGCCGCAGCAATGTATTTCTTCCTCCGCGTCTTCGTGGCGGCAGT
CATTATTTTTTCAGGTTGTCGCGTGACAGCGACGCACCTTCGGACCGGGT
CGCCGACCGCGGCGCCTACTTTCGCTCCGACGTCGAGCCCTTCCCGGGCG
GCGTACAGCGTCCAAGATCAGGACGAGACCTACGCGCCGACGGCGGCGCC
TTCCCCAATGCCGACCTATTGGGACAACAGCACCAGCCCCTCGGCAGCGC
CCAGCGCGGCGGGTACATGGGCTCCCTCCCTGAACAACCCGTGATTTCGG
TGATGCCGTGTCGCCTCCGTTTATTTCTCTGA
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