mRNA_P-wetherbeei_contig15130.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15130.2.1
Unique NamemRNA_P-wetherbeei_contig15130.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15130.2.1 vs. uniprot
Match: A0A847ZTV6_9HYPH (Triosephosphate isomerase n=1 Tax=Phyllobacteriaceae bacterium TaxID=1871068 RepID=A0A847ZTV6_9HYPH)

HSP 1 Score: 82.4 bits (202), Expect = 9.410e-18
Identity = 38/54 (70.37%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:    1 MTKKIPWIGTGWKMNKLRADAVGFANTLKGSAIASTALAQTFVLPPFPYIAEVA 162
            M +KIPWIGT WKMNKLR DA  FA TLK S  A+T  AQ F++PPFPYIAEVA
Sbjct:    1 MARKIPWIGTSWKMNKLREDARAFAETLKSSPFANTTAAQPFIIPPFPYIAEVA 54
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BLAST of mRNA_P-wetherbeei_contig15130.2.1 vs. uniprot
Match: UPI0018C79B75 (triose-phosphate isomerase n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=UPI0018C79B75)

HSP 1 Score: 79.3 bits (194), Expect = 1.380e-16
Identity = 37/54 (68.52%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:    1 MTKKIPWIGTGWKMNKLRADAVGFANTLKGSAIASTALAQTFVLPPFPYIAEVA 162
            M +KIPWIGT WKMNKLRADA  FA TL  S +A     Q FV+PPFPYIAEVA
Sbjct:    1 MARKIPWIGTSWKMNKLRADAQSFARTLAASPVAQATNCQPFVIPPFPYIAEVA 54
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BLAST of mRNA_P-wetherbeei_contig15130.2.1 vs. uniprot
Match: A0A257JEU2_9PROT (L-erythrulose-1-phosphate isomerase (Fragment) n=1 Tax=Alphaproteobacteria bacterium PA3 TaxID=2015571 RepID=A0A257JEU2_9PROT)

HSP 1 Score: 74.3 bits (181), Expect = 1.430e-16
Identity = 35/51 (68.63%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:   10 KIPWIGTGWKMNKLRADAVGFANTLKGSAIASTALAQTFVLPPFPYIAEVA 162
            K PWIGT WKMNK RA+A  FA  LK  A A+T  AQ FV+PPFPYIAEVA
Sbjct:    2 KTPWIGTSWKMNKTRAEARAFAQALKACAFANTTQAQPFVIPPFPYIAEVA 52
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BLAST of mRNA_P-wetherbeei_contig15130.2.1 vs. uniprot
Match: A0A2W2B8U2_9HYPH (Triosephosphate isomerase n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=A0A2W2B8U2_9HYPH)

HSP 1 Score: 74.3 bits (181), Expect = 1.100e-14
Identity = 35/51 (68.63%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:   10 KIPWIGTGWKMNKLRADAVGFANTLKGSAIASTALAQTFVLPPFPYIAEVA 162
            K PWIGT WKMNK R +A  FA  LK S  A+TA AQ FV+PPFPYIAEVA
Sbjct:    2 KTPWIGTSWKMNKTRGEARAFAEALKASPFATTAKAQPFVIPPFPYIAEVA 52
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BLAST of mRNA_P-wetherbeei_contig15130.2.1 vs. uniprot
Match: A0A4Q2UFN9_9HYPH (Triosephosphate isomerase n=1 Tax=Lichenibacterium minor TaxID=2316528 RepID=A0A4Q2UFN9_9HYPH)

HSP 1 Score: 61.6 bits (148), Expect = 6.100e-10
Identity = 29/48 (60.42%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:   19 WIGTGWKMNKLRADAVGFANTLKGSAIASTALAQTFVLPPFPYIAEVA 162
            WIGT WKMNKLRA+A  FA  L G+ +A    AQ FV+PPF  +AEVA
Sbjct:    7 WIGTSWKMNKLRAEARAFAEALVGTDLARNTAAQLFVIPPFTAVAEVA 54
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BLAST of mRNA_P-wetherbeei_contig15130.2.1 vs. uniprot
Match: UPI001F006B85 (triose-phosphate isomerase n=1 Tax=Lichenibacterium sp. 6Y81 TaxID=2895977 RepID=UPI001F006B85)

HSP 1 Score: 60.8 bits (146), Expect = 1.180e-9
Identity = 28/48 (58.33%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:   19 WIGTGWKMNKLRADAVGFANTLKGSAIASTALAQTFVLPPFPYIAEVA 162
            WIGT WKMNKLRA+A  F   LK S +A +  AQ F++PPF  +AEVA
Sbjct:    7 WIGTSWKMNKLRAEARAFVEALKASDLARSTPAQLFIIPPFTAVAEVA 54
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BLAST of mRNA_P-wetherbeei_contig15130.2.1 vs. uniprot
Match: A0A4Q2REE7_9HYPH (Triosephosphate isomerase n=1 Tax=Lichenibacterium ramalinae TaxID=2316527 RepID=A0A4Q2REE7_9HYPH)

HSP 1 Score: 59.3 bits (142), Expect = 4.370e-9
Identity = 28/48 (58.33%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:   19 WIGTGWKMNKLRADAVGFANTLKGSAIASTALAQTFVLPPFPYIAEVA 162
            WIGT WKMNK+RA+A  FA  L  S +A    AQ FV+PPF  +AEVA
Sbjct:    7 WIGTSWKMNKVRAEARAFAEALAASDLARRTTAQLFVIPPFTAVAEVA 54
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BLAST of mRNA_P-wetherbeei_contig15130.2.1 vs. uniprot
Match: UPI001D0A1668 (triose-phosphate isomerase n=3 Tax=Lichenihabitans TaxID=2723776 RepID=UPI001D0A1668)

HSP 1 Score: 59.3 bits (142), Expect = 4.520e-9
Identity = 30/54 (55.56%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:    1 MTKKIPWIGTGWKMNKLRADAVGFANTLKGSAIASTALAQTFVLPPFPYIAEVA 162
            M  K PWIGT +KMNK+RA+A  FA  L  S +  TA A+ FV+PPF  IA+VA
Sbjct:    1 MAAKRPWIGTSFKMNKIRAEARDFARALVASPLIETADAKLFVIPPFTSIADVA 54
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BLAST of mRNA_P-wetherbeei_contig15130.2.1 vs. uniprot
Match: UPI001A93737B (triose-phosphate isomerase n=1 Tax=unclassified Jiella TaxID=2643868 RepID=UPI001A93737B)

HSP 1 Score: 55.8 bits (133), Expect = 8.600e-8
Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:    1 MTKKIPWIGTGWKMNKLRADAVGFANTLKGSAIASTALAQTFVLPPFPYIAEVA 162
            ++ K P+IGT WKMNK RA+A  F  ++K S +A+   AQ FV+PPF  +  VA
Sbjct:    7 VSTKRPFIGTSWKMNKTRAEAAAFCQSVKASPLAACENAQLFVIPPFTVLTAVA 60
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BLAST of mRNA_P-wetherbeei_contig15130.2.1 vs. uniprot
Match: A0A5C4N765_9RHOB (Triosephosphate isomerase n=1 Tax=Rubellimicrobium roseum TaxID=687525 RepID=A0A5C4N765_9RHOB)

HSP 1 Score: 52.0 bits (123), Expect = 2.140e-6
Identity = 25/53 (47.17%), Postives = 31/53 (58.49%), Query Frame = 1 
Query:    1 MTKKIPWIGTGWKMNKLRADAVGFANTLKGSAIASTALAQTFVLPPFPYIAEV 159
            MT    W+GT WKMNK RA+A+ FA  L  +        Q FV+PPF  +AEV
Sbjct:    1 MTTGTLWVGTSWKMNKTRAEALAFAQALHEAEDGRDPRVQRFVIPPFTALAEV 53
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15130.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A847ZTV6_9HYPH9.410e-1870.37Triosephosphate isomerase n=1 Tax=Phyllobacteriace... [more]
UPI0018C79B751.380e-1668.52triose-phosphate isomerase n=1 Tax=Aestuariivirga ... [more]
A0A257JEU2_9PROT1.430e-1668.63L-erythrulose-1-phosphate isomerase (Fragment) n=1... [more]
A0A2W2B8U2_9HYPH1.100e-1468.63Triosephosphate isomerase n=1 Tax=Aestuariivirga l... [more]
A0A4Q2UFN9_9HYPH6.100e-1060.42Triosephosphate isomerase n=1 Tax=Lichenibacterium... [more]
UPI001F006B851.180e-958.33triose-phosphate isomerase n=1 Tax=Lichenibacteriu... [more]
A0A4Q2REE7_9HYPH4.370e-958.33Triosephosphate isomerase n=1 Tax=Lichenibacterium... [more]
UPI001D0A16684.520e-955.56triose-phosphate isomerase n=3 Tax=Lichenihabitans... [more]
UPI001A93737B8.600e-848.15triose-phosphate isomerase n=1 Tax=unclassified Ji... [more]
A0A5C4N765_9RHOB2.140e-647.17Triosephosphate isomerase n=1 Tax=Rubellimicrobium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15130contigP-wetherbeei_contig15130:1460..1621 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1041139.KB902713_gene4297
Preferred nametpiA2
PFAMsTIM
Model size162
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00423
KEGG koko:K01803,ko:K21910
KEGG ReactionR01015
KEGG Pathwayko00010,ko00051,ko00562,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00051,map00562,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00001,M00002,M00003
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue2.63e-08
EggNOG OGsCOG0149@1|root,COG0149@2|Bacteria,1MX4F@1224|Proteobacteria,2TTV8@28211|Alphaproteobacteria,4BAEJ@82115|Rhizobiaceae
EC5.3.1.1,5.3.1.33
Descriptiontriose-phosphate isomerase
Cds size162
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186045.7520025-CDS-P-wetherbeei_contig15130:1459..16211683186045.7520025-CDS-P-wetherbeei_contig15130:1459..1621Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15130 1460..1621 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15130.2.1prot_P-wetherbeei_contig15130.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15130 1460..1621 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15130.2.1

>prot_P-wetherbeei_contig15130.2.1 ID=prot_P-wetherbeei_contig15130.2.1|Name=mRNA_P-wetherbeei_contig15130.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=54bp
MTKKIPWIGTGWKMNKLRADAVGFANTLKGSAIASTALAQTFVLPPFPYI
AEVA
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mRNA from alignment at P-wetherbeei_contig15130:1460..1621+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15130.2.1 ID=mRNA_P-wetherbeei_contig15130.2.1|Name=mRNA_P-wetherbeei_contig15130.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=162bp|location=Sequence derived from alignment at P-wetherbeei_contig15130:1460..1621+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGAAAAAGATTCCCTGGATCGGCACCGGCTGGAAAATGAACAAGCT
CCGTGCCGATGCGGTGGGCTTTGCCAACACGCTTAAGGGTTCAGCCATTG
CCAGCACCGCATTGGCCCAAACCTTCGTGCTCCCGCCCTTTCCCTATATC
GCCGAAGTGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15130:1460..1621+

>mRNA_P-wetherbeei_contig15130.2.1 ID=mRNA_P-wetherbeei_contig15130.2.1|Name=mRNA_P-wetherbeei_contig15130.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=162bp|location=Sequence derived from alignment at P-wetherbeei_contig15130:1460..1621+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGAAAAAGATTCCCTGGATCGGCACCGGCTGGAAAATGAACAAGCT
CCGTGCCGATGCGGTGGGCTTTGCCAACACGCTTAAGGGTTCAGCCATTG
CCAGCACCGCATTGGCCCAAACCTTCGTGCTCCCGCCCTTTCCCTATATC
GCCGAAGTGGCG
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