mRNA_P-wetherbeei_contig15126.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15126.1.1
Unique NamemRNA_P-wetherbeei_contig15126.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15126.1.1 vs. uniprot
Match: A0A849V2K9_9GAMM (Uncharacterized protein n=1 Tax=Methyloglobulus sp. TaxID=2518622 RepID=A0A849V2K9_9GAMM)

HSP 1 Score: 120 bits (301), Expect = 2.680e-33
Identity = 58/103 (56.31%), Postives = 75/103 (72.82%), Query Frame = 1
Query:   13 MSEWIAERRLLYTEKGSTTRQELIIRIGRPYIVKPGSVQFEISDGTAACCVEIVGLNDGYLDEVYGADLLQALQLATNVEPTLRRLSTKYDLYFPTGEPYFEE 321
            M  +IAER LLY++KGS+ R EL +RI  P +V  G V FE S GTAAC +E  GL +  ++EV+GAD +QAL LATN++P L+RL  +YDLY+  GEPYFEE
Sbjct:    1 MGHFIAERSLLYSQKGSSNRYELNVRINEPRLVNQGEVNFEFSPGTAACKIEFNGLPESLVEEVFGADSIQALSLATNIDPYLKRLQKEYDLYWIDGEPYFEE 103          
BLAST of mRNA_P-wetherbeei_contig15126.1.1 vs. uniprot
Match: A0A521X3I6_9GAMM (Uncharacterized protein n=1 Tax=Methylobacter sp. TaxID=2051955 RepID=A0A521X3I6_9GAMM)

HSP 1 Score: 110 bits (275), Expect = 2.420e-29
Identity = 54/103 (52.43%), Postives = 72/103 (69.90%), Query Frame = 1
Query:   13 MSEWIAERRLLYTEKGSTTRQELIIRIGRPYIVKPGSVQFEISDGTAACCVEIVGLNDGYLDEVYGADLLQALQLATNVEPTLRRLSTKYDLYFPTGEPYFEE 321
            MS+ IA+R+L+++ KG   R   ++++  P  +K G V+F+ + GTA C V+  GL     + VYGAD LQALQLA +VEP L+RLS KYDLYFPTGE YFEE
Sbjct:    1 MSQCIAQRKLMFSLKGKNERNPFVVQVLAPRELKEGDVEFQFTGGTAVCIVQFEGLPSVNPEHVYGADSLQALQLAADVEPILKRLSKKYDLYFPTGEGYFEE 103          
BLAST of mRNA_P-wetherbeei_contig15126.1.1 vs. uniprot
Match: A0A0R0C3B3_9GAMM (Uncharacterized protein n=2 Tax=Stenotrophomonas terrae TaxID=405446 RepID=A0A0R0C3B3_9GAMM)

HSP 1 Score: 105 bits (262), Expect = 2.640e-27
Identity = 53/107 (49.53%), Postives = 71/107 (66.36%), Query Frame = 1
Query:    1 ELLRMSEWIAERRLLYTEKGSTTRQELIIRIGRPYIVKPGSVQFEISDGTAACCVEIVGLNDGYLDEVYGADLLQALQLATNVEPTLRRLSTKYDLYFPTGEPYFEE 321
            E + M   IA+R L+++ +G+  R  + I I  P+I++PGSV FE S GTA C ++I GL + +    YGAD LQALQLA+N +  LR L  KYD YFP GEPYFE+
Sbjct:    2 ERVSMPHPIAKRELMFSIRGTEKRTGITIHISAPFILQPGSVNFEFSGGTAGCTLQIDGLPEEFSHTAYGADSLQALQLASNPDRHLRYLRRKYDFYFPDGEPYFED 108          
BLAST of mRNA_P-wetherbeei_contig15126.1.1 vs. uniprot
Match: A0A2E2QQA2_9PROT (Uncharacterized protein n=1 Tax=Sneathiella sp. TaxID=1964365 RepID=A0A2E2QQA2_9PROT)

HSP 1 Score: 103 bits (258), Expect = 9.550e-27
Identity = 56/105 (53.33%), Postives = 72/105 (68.57%), Query Frame = 1
Query:   13 MSEWIAERRLLYTEKGSTTRQELIIRIGRPYIVKPGSVQFEISDGTAACCVEIVGLNDGYLDEVYGADLLQALQLATN-VEPTLRRLSTKYDLYFPTGEPYFEEE 324
            M++ +AER+LLY+ K +  R E  +RI  P  +  G   FE    TA C +E  G+ DG  D+ YGADLLQAL+L+ N VEP LRRLS KYDLYFP+GEPYFE++
Sbjct:    1 MTQAVAERKLLYSLKNAGERHEFSVRIMPPRYLVQGEKFFEPGAETAVCSIEFDGI-DGQNDKTYGADLLQALELSVNSVEPMLRRLSKKYDLYFPSGEPYFEDD 104          
BLAST of mRNA_P-wetherbeei_contig15126.1.1 vs. uniprot
Match: UPI001C059A1E (hypothetical protein n=1 Tax=Zooshikella sp. WH53 TaxID=2827238 RepID=UPI001C059A1E)

HSP 1 Score: 102 bits (253), Expect = 5.040e-26
Identity = 49/100 (49.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query:   22 WIAERRLLYTEKGSTTRQELIIRIGRPYIVKPGSVQFEISDGTAACCVEIVGLNDGYLDEVYGADLLQALQLATNVEPTLRRLSTKYDLYFPTGEPYFEE 321
            ++AER+LL++EKG    +EL+I+I  P++V    V+F     T+ C VEI GL++   + +YG D LQA+ LA+NVEP L RLS KYD ++ TGEPYF+E
Sbjct:    3 YVAERKLLFSEKGGQCTKELVIKISEPFVVNQNDVKFPTDGVTSGCHVEIEGLDESGFN-LYGMDSLQAINLASNVEPLLERLSNKYDFFWLTGEPYFDE 101          
BLAST of mRNA_P-wetherbeei_contig15126.1.1 vs. uniprot
Match: A0A653B9V8_PSEOL (Uncharacterized protein n=2 Tax=Pseudomonas oleovorans TaxID=301 RepID=A0A653B9V8_PSEOL)

HSP 1 Score: 101 bits (252), Expect = 1.230e-25
Identity = 54/107 (50.47%), Postives = 68/107 (63.55%), Query Frame = 1
Query:    1 ELLRMSEWIAERRLLYTEKGSTTRQELIIRIGRPYIVKPGSVQFEISDGTAACCVEIVGLNDGYLDEV-YGADLLQALQLATNVEPTLRRLSTKYDLYFPTGEPYFE 318
            EL    E IA R L Y  KG   R  L I++ +PY+++ G V F  S GT+ C ++  GL+    D V YGAD+LQALQ A +VEP L+R+S  YDLYF TGEPYFE
Sbjct:   14 ELAMSREVIAIRELEYAAKGKEARCRLTIKVFKPYLLQQGKVPFSFSPGTSGCELKFEGLDTKRFDTVFYGADMLQALQFAADVEPILKRISQDYDLYFETGEPYFE 120          
BLAST of mRNA_P-wetherbeei_contig15126.1.1 vs. uniprot
Match: A0A0Q8EUR2_9GAMM (Uncharacterized protein n=1 Tax=Pseudoxanthomonas sp. Root65 TaxID=1736576 RepID=A0A0Q8EUR2_9GAMM)

HSP 1 Score: 100 bits (250), Expect = 1.520e-25
Identity = 52/103 (50.49%), Postives = 66/103 (64.08%), Query Frame = 1
Query:   13 MSEWIAERRLLYTEKGSTTRQELIIRIGRPYIVKPGSVQFEISDGTAACCVEIVGLNDGYLDEVYGADLLQALQLATNVEPTLRRLSTKYDLYFPTGEPYFEE 321
            M+E IAER L Y  +G   R++L+IRI  P+IV  GSV FE+    A C  E+ GL +   D  YGAD +QALQLA N++  L  L  KYD YF +GEPYFE+
Sbjct:    1 MTERIAERSLQYAVRGGGQRKDLVIRIFSPFIVPVGSVNFEVDGVVAGCRWELEGLPEKVSDTTYGADSVQALQLAANIDGVLAALRDKYDFYFRSGEPYFED 103          
BLAST of mRNA_P-wetherbeei_contig15126.1.1 vs. uniprot
Match: UPI00131B3A65 (hypothetical protein n=1 Tax=Dyella sp. S184 TaxID=1641862 RepID=UPI00131B3A65)

HSP 1 Score: 100 bits (250), Expect = 1.610e-25
Identity = 52/99 (52.53%), Postives = 66/99 (66.67%), Query Frame = 1
Query:   25 IAERRLLYTEKGSTTRQELIIRIGRPYIVKPGSVQFEISDGTAACCVEIVGLNDGYLDEVYGADLLQALQLATNVEPTLRRLSTKYDLYFPTGEPYFEE 321
            IA R LLY+  G TTRQ+L IRI  PY++ PGSV F   +GTA C +E  GL    +  VYGAD LQALQLA +++P LR LS KYD +F  G+ Y ++
Sbjct:    8 IAARNLLYSPIGETTRQKLTIRIVGPYLLTPGSVSFVFDEGTAGCDIEFDGLPQKTIS-VYGADTLQALQLAVDIDPYLRGLSRKYDFFFDNGDSYLDD 105          
BLAST of mRNA_P-wetherbeei_contig15126.1.1 vs. uniprot
Match: UPI0013C4A5E3 (hypothetical protein n=1 Tax=Solimonas sp. K1W22B-7 TaxID=2303331 RepID=UPI0013C4A5E3)

HSP 1 Score: 100 bits (249), Expect = 2.160e-25
Identity = 51/104 (49.04%), Postives = 69/104 (66.35%), Query Frame = 1
Query:   13 MSEWIAERRLLYTEKGSTTRQELIIRIGRPYIVKPGSVQFEISDGTAACCVEIVGLNDGYLDEVYGADLLQALQLATNVEPTLRRLSTKYDLYFPTGEPYFEEE 324
            M  ++A+R LLY+ KG   R +  + I  PY++  GSV F    GTA C +E  GL +  + EVYGAD LQA++LA+NVEP L  L  KYD+Y+ +GEPYFE+E
Sbjct:    1 MKSYLAKRDLLYSLKGQKIRHQFSVGIREPYLLTEGSVNFIFDPGTAGCTIEFEGLPERPI-EVYGADTLQAVELASNVEPYLSGLRKKYDIYWLSGEPYFEDE 103          
BLAST of mRNA_P-wetherbeei_contig15126.1.1 vs. uniprot
Match: A0A1Y5GUQ4_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium 45_16_T64 TaxID=1856297 RepID=A0A1Y5GUQ4_9GAMM)

HSP 1 Score: 96.3 bits (238), Expect = 1.100e-23
Identity = 49/102 (48.04%), Postives = 72/102 (70.59%), Query Frame = 1
Query:   19 EWIAERRLLYTEKGSTTRQELIIRIGRPYIVKPGSVQFEISDGTAACCVEIVGLNDGYLDEVYGADLLQALQLATNVEPTLRRLSTKYDLYFPTGEPYFEEE 324
            ++IAER LL++EK  + R+E+ IRIG PY V+   V+F +   T+ C VEI G+++   D +YG D LQA+ LA+N+EP + RLS  YD ++ +GEPYF+EE
Sbjct:    2 QYIAERILLFSEKKCSIRKEVRIRIGVPYPVQQDKVEFSVDRYTSGCRVEIEGIDECGFD-LYGMDSLQAVNLASNIEPLIERLSGDYDFFWLSGEPYFDEE 102          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15126.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A849V2K9_9GAMM2.680e-3356.31Uncharacterized protein n=1 Tax=Methyloglobulus sp... [more]
A0A521X3I6_9GAMM2.420e-2952.43Uncharacterized protein n=1 Tax=Methylobacter sp. ... [more]
A0A0R0C3B3_9GAMM2.640e-2749.53Uncharacterized protein n=2 Tax=Stenotrophomonas t... [more]
A0A2E2QQA2_9PROT9.550e-2753.33Uncharacterized protein n=1 Tax=Sneathiella sp. Ta... [more]
UPI001C059A1E5.040e-2649.00hypothetical protein n=1 Tax=Zooshikella sp. WH53 ... [more]
A0A653B9V8_PSEOL1.230e-2550.47Uncharacterized protein n=2 Tax=Pseudomonas oleovo... [more]
A0A0Q8EUR2_9GAMM1.520e-2550.49Uncharacterized protein n=1 Tax=Pseudoxanthomonas ... [more]
UPI00131B3A651.610e-2552.53hypothetical protein n=1 Tax=Dyella sp. S184 TaxID... [more]
UPI0013C4A5E32.160e-2549.04hypothetical protein n=1 Tax=Solimonas sp. K1W22B-... [more]
A0A1Y5GUQ4_9GAMM1.100e-2348.04Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15126contigP-wetherbeei_contig15126:73..399 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size327
Hectar predicted targeting categoryother localisation
Exons1
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186045.412695-UTR-P-wetherbeei_contig15126:72..841683186045.412695-UTR-P-wetherbeei_contig15126:72..84Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15126 73..84 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186045.4217207-CDS-P-wetherbeei_contig15126:84..3991683186045.4217207-CDS-P-wetherbeei_contig15126:84..399Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15126 85..399 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15126.1.1prot_P-wetherbeei_contig15126.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15126 85..399 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15126.1.1

>prot_P-wetherbeei_contig15126.1.1 ID=prot_P-wetherbeei_contig15126.1.1|Name=mRNA_P-wetherbeei_contig15126.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=105bp
MSEWIAERRLLYTEKGSTTRQELIIRIGRPYIVKPGSVQFEISDGTAACC
VEIVGLNDGYLDEVYGADLLQALQLATNVEPTLRRLSTKYDLYFPTGEPY
FEEE*
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mRNA from alignment at P-wetherbeei_contig15126:73..399+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15126.1.1 ID=mRNA_P-wetherbeei_contig15126.1.1|Name=mRNA_P-wetherbeei_contig15126.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig15126:73..399+ (Phaeothamnion wetherbeei SAG_119_79)
GAATTACTGCGTATGAGCGAATGGATTGCAGAGAGAAGGCTCCTTTACAC CGAAAAGGGCAGTACTACTCGACAAGAATTAATCATTCGCATCGGCCGGC CCTACATCGTCAAGCCGGGCTCCGTGCAATTTGAGATCTCTGACGGCACT GCTGCGTGCTGCGTGGAGATTGTCGGACTGAACGATGGATACTTAGATGA AGTGTACGGTGCCGATCTCCTGCAGGCACTACAATTGGCAACCAACGTTG AGCCGACCTTAAGGCGCCTTAGCACGAAGTACGATCTCTATTTCCCGACC GGAGAGCCGTATTTTGAAGAAGAGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15126:73..399+

>mRNA_P-wetherbeei_contig15126.1.1 ID=mRNA_P-wetherbeei_contig15126.1.1|Name=mRNA_P-wetherbeei_contig15126.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=315bp|location=Sequence derived from alignment at P-wetherbeei_contig15126:73..399+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGAATGGATTGCAGAGAGAAGGCTCCTTTACACCGAAAAGGGCAG
TACTACTCGACAAGAATTAATCATTCGCATCGGCCGGCCCTACATCGTCA
AGCCGGGCTCCGTGCAATTTGAGATCTCTGACGGCACTGCTGCGTGCTGC
GTGGAGATTGTCGGACTGAACGATGGATACTTAGATGAAGTGTACGGTGC
CGATCTCCTGCAGGCACTACAATTGGCAACCAACGTTGAGCCGACCTTAA
GGCGCCTTAGCACGAAGTACGATCTCTATTTCCCGACCGGAGAGCCGTAT
TTTGAAGAAGAGTAA
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