mRNA_P-wetherbeei_contig15121.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15121.1.1
Unique NamemRNA_P-wetherbeei_contig15121.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15121.1.1 vs. uniprot
Match: D7FKR7_ECTSI (L-galactono-1,4-lactone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKR7_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 2.000e-44
Identity = 83/137 (60.58%), Postives = 99/137 (72.26%), Query Frame = 1
Query:    1 FSAGTLTEPSRADLRYVEEALALIEANGIAAPSPIEQRWTATSSAPMSPA-SAADPAAVHSWVGIIMYLPSDDPGTRVAITEAFFRYRDLCRDRLWDKYDCAEHWAKIEKPRTDGERETVRRRLRRRYKIDEFNSAR 408
            F  GTL EP+  DL Y++E + LIE  GI AP+PIEQRWT++S+A +SPA   A P  V SWVG+IMYLP+DD   R  +TEAFF YRDLC+ RLWD+YDCA HWAKIEKPRT  E E  R RL RR+ +  FNS R
Sbjct:  418 FPVGTLEEPNGKDLDYMDELMRLIEREGIPAPAPIEQRWTSSSNATLSPAHDGASPETVFSWVGVIMYLPADDVDARKRVTEAFFAYRDLCKVRLWDRYDCAVHWAKIEKPRTAREAEDTRARLGRRFPVGAFNSVR 554          
BLAST of mRNA_P-wetherbeei_contig15121.1.1 vs. uniprot
Match: A0A7J8ZYA1_9ROSI (ALO domain-containing protein (Fragment) n=1 Tax=Gossypium laxum TaxID=34288 RepID=A0A7J8ZYA1_9ROSI)

HSP 1 Score: 145 bits (367), Expect = 3.990e-41
Identity = 76/137 (55.47%), Postives = 95/137 (69.34%), Query Frame = 1
Query:    1 FSAGTLTEPSRADLRYVEEALALIEANGIAAPSPIEQRWTATSSAPMSPASAADPAAVHSWVGIIMYLPSDDPGTRVAITEAFFRYRDLCRDRLWDKYDCAEHWAKIEKPRTDGERETVRRRLRRRYKIDEFNSARR 411
            F AGTL++PS  DL Y+EE   LIE N + AP+PIEQRWTA S +PMSPAS++    + SWVGIIMYLP+ D   R  ITE FF YR L + +LWDKY   EHWAKIE P+   E E ++ RL+ R+ +D +N ARR
Sbjct:   80 FPAGTLSKPSMKDLEYIEELKKLIETNELPAPAPIEQRWTARSQSPMSPASSSAEDDIFSWVGIIMYLPTMDARQRKEITEEFFHYRHLTQTQLWDKYSAYEHWAKIEVPKDKEELEALQARLKTRFPVDAYNKARR 216          
BLAST of mRNA_P-wetherbeei_contig15121.1.1 vs. uniprot
Match: A0A7S0R7R7_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0R7R7_9CHLO)

HSP 1 Score: 152 bits (384), Expect = 1.070e-40
Identity = 80/139 (57.55%), Postives = 100/139 (71.94%), Query Frame = 1
Query:    1 FSAGTLTEPSRADLRYVEEALALIEANGIAAPSPIEQRWTATSSAPMSPASAA--DPAAVHSWVGIIMYLPSDDPGTRVAITEAFFRYRDLCRDRLWDKYDCAEHWAKIEKPRTDGERETVRRRLRRRYKIDEFNSARR 411
            F  G+L   S  D+ Y+EE L LIEA  IAAPSPIEQRWTA SS+ MSPASA+  D +++HSW+GIIMYLPS +P  R  IT AF  Y++LC +RLW KY   EHWAK+E P +  + E +RRRLR R+ +D FN+ARR
Sbjct:  428 FPCGSLENLSMKDITYMEEVLELIEAENIAAPSPIEQRWTAGSSSRMSPASASPNDASSLHSWIGIIMYLPSQEPAVRAQITAAFNAYKELCIERLWGKYGAVEHWAKVELPDSSEKLEDLRRRLRERFPVDAFNAARR 566          
BLAST of mRNA_P-wetherbeei_contig15121.1.1 vs. uniprot
Match: A0A6J1EAT5_CUCMO (L-galactono-1,4-lactone dehydrogenase 1, mitochondrial-like n=1 Tax=Cucurbita moschata TaxID=3662 RepID=A0A6J1EAT5_CUCMO)

HSP 1 Score: 143 bits (361), Expect = 2.950e-40
Identity = 74/137 (54.01%), Postives = 93/137 (67.88%), Query Frame = 1
Query:    1 FSAGTLTEPSRADLRYVEEALALIEANGIAAPSPIEQRWTATSSAPMSPASAADPAAVHSWVGIIMYLPSDDPGTRVAITEAFFRYRDLCRDRLWDKYDCAEHWAKIEKPRTDGERETVRRRLRRRYKIDEFNSARR 411
            F AGTL +P+  D+ Y+EE   LIE   I AP+PIEQRWTA S +PMSPAS++    + SWVGIIMYLP+ D   R  ITE FF YR L +  LWD+Y   EHWAKIE P+   E   ++ RLR+R+ +DE+N ARR
Sbjct:   77 FPAGTLAKPNMKDIEYIEELKQLIEKENIPAPAPIEQRWTACSKSPMSPASSSAEDDIFSWVGIIMYLPTSDARQRKEITEEFFHYRHLTQTLLWDQYSAFEHWAKIEVPKDKDELAALQARLRKRFPVDEYNKARR 213          
BLAST of mRNA_P-wetherbeei_contig15121.1.1 vs. uniprot
Match: A0A835ZG22_9STRA (L-galactono-1,4-lactone dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG22_9STRA)

HSP 1 Score: 149 bits (375), Expect = 7.210e-40
Identity = 78/126 (61.90%), Postives = 93/126 (73.81%), Query Frame = 1
Query:   34 ADLRYVEEALALIEANGIAAPSPIEQRWTATSSAPMSPASAADPAAVHSWVGIIMYLPSDDPGTRVAITEAFFRYRDLCRDRLWDKYDCAEHWAKIEKPRTDGERETVRRRLRRRYKIDEFNSARR 411
            ADL YV E LALIE   + AP+PIEQRWTA S+A MSPA  A    V SWVGIIMYLPSD+   R  IT AFF YRDLC+++LWD+Y+C EHWAKIEKP T  E  +++ RLRR Y ++ FN+ARR
Sbjct:  365 ADLNYVLEVLALIEEGNVPAPAPIEQRWTAPSAARMSPARVAG--GVASWVGIIMYLPSDEARQRSDITRAFFEYRDLCKEKLWDRYECTEHWAKIEKPDTPEEAASLQARLRRHYPVNAFNAARR 488          
BLAST of mRNA_P-wetherbeei_contig15121.1.1 vs. uniprot
Match: R1FS38_EMIHU (Mitochondrial L-galactono-1,4-lactone dehydrogenase n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FS38_EMIHU)

HSP 1 Score: 149 bits (375), Expect = 1.500e-39
Identity = 78/130 (60.00%), Postives = 95/130 (73.08%), Query Frame = 1
Query:   22 EPSRADLRYVEEALALIEANGIAAPSPIEQRWTATSSAPMSPASAADPAAVHSWVGIIMYLPSDDPGTRVAITEAFFRYRDLCRDRLWDKYDCAEHWAKIEKPRTDGERETVRRRLRRRYKIDEFNSARR 411
            E  R DL+Y+ + LALIEA+ I APSPIEQRW+  S++PMSPA +A    +HSWVGIIMYLP D P  R AIT+AF+ Y  +CR +LW KYD  +HWAKIE P    ER  VRRRLR R+ +DEFN+ARR
Sbjct:  427 ESCRRDLQYMTDLLALIEASDIPAPSPIEQRWSRRSASPMSPAHSAGEDDLHSWVGIIMYLPIDRPEARQAITDAFWDYNAVCRRQLWPKYDAHQHWAKIEPPADAAERAAVRRRLRDRFPVDEFNAARR 556          
BLAST of mRNA_P-wetherbeei_contig15121.1.1 vs. uniprot
Match: D3JYX1_ACTDE (L-galactono-1,4-lactone dehydrogenase (Fragment) n=1 Tax=Actinidia deliciosa TaxID=3627 RepID=D3JYX1_ACTDE)

HSP 1 Score: 144 bits (362), Expect = 2.880e-39
Identity = 74/136 (54.41%), Postives = 96/136 (70.59%), Query Frame = 1
Query:    1 FSAGTLTEPSRADLRYVEEALALIEANGIAAPSPIEQRWTATSSAPMSPASAADPAAVHSWVGIIMYLPSDDPGTRVAITEAFFRYRDLCRDRLWDKYDCAEHWAKIEKPRTDGERETVRRRLRRRYKIDEFNSAR 408
            F AGTL++PS  DL+++EE + LIE   I AP+PIEQRWTA S +PMSPAS+A    + SWVGIIMYLP+ DP  R  ITE FF YR L + +LWD++   EHWAKIE P+   E   ++ RLR+R+ +D +N AR
Sbjct:  184 FPAGTLSKPSMKDLQFMEEVMQLIEKEMIPAPAPIEQRWTARSKSPMSPASSAAEEDIFSWVGIIMYLPTMDPRQRKEITEKFFHYRRLTQTQLWDQFSAYEHWAKIEVPKDKDELAALQARLRKRFPVDTYNKAR 319          
BLAST of mRNA_P-wetherbeei_contig15121.1.1 vs. uniprot
Match: A6ZEA2_MALDO (Mitochondrial L-galactono-1,4-lactone dehydrogenase (Fragment) n=1 Tax=Malus domestica TaxID=3750 RepID=A6ZEA2_MALDO)

HSP 1 Score: 142 bits (359), Expect = 7.210e-39
Identity = 75/137 (54.74%), Postives = 92/137 (67.15%), Query Frame = 1
Query:    1 FSAGTLTEPSRADLRYVEEALALIEANGIAAPSPIEQRWTATSSAPMSPASAADPAAVHSWVGIIMYLPSDDPGTRVAITEAFFRYRDLCRDRLWDKYDCAEHWAKIEKPRTDGERETVRRRLRRRYKIDEFNSARR 411
            F AGTL +PS  DL Y+E    LIE N I AP+PIEQRWTA + +PMSPAS+     + SWVGIIMYLP+ DP     ITE FF YR L + +LWDKY   EHWAKIE P+   E   ++ RLR+R+ +D +N ARR
Sbjct:  179 FPAGTLAKPSMKDLEYIEGVKQLIEKNEIPAPAPIEQRWTACTKSPMSPASSTREDDIFSWVGIIMYLPTTDPRQGKEITEEFFHYRRLTQTQLWDKYSAYEHWAKIEVPKDKDELAALQDRLRKRFPVDAYNKARR 315          
BLAST of mRNA_P-wetherbeei_contig15121.1.1 vs. uniprot
Match: UPI0010AAC1E2 (LOW QUALITY PROTEIN: L-galactono-1,4-lactone dehydrogenase, mitochondrial n=1 Tax=Malus domestica TaxID=3750 RepID=UPI0010AAC1E2)

HSP 1 Score: 142 bits (358), Expect = 8.520e-39
Identity = 75/137 (54.74%), Postives = 91/137 (66.42%), Query Frame = 1
Query:    1 FSAGTLTEPSRADLRYVEEALALIEANGIAAPSPIEQRWTATSSAPMSPASAADPAAVHSWVGIIMYLPSDDPGTRVAITEAFFRYRDLCRDRLWDKYDCAEHWAKIEKPRTDGERETVRRRLRRRYKIDEFNSARR 411
            F AGTL +PS  DL Y+E    LIE N I AP+PIEQRWTA + +PMSPAS+     + SWVGIIMYLP+ DP  R  ITE  F YR L   +LWDKY   EHWAKIE P+   E   ++ RLR+R+ +D +N ARR
Sbjct:  171 FPAGTLAKPSMKDLEYIEGIKQLIEKNEIPAPAPIEQRWTACTKSPMSPASSTREDDIFSWVGIIMYLPTXDPRQRKEITEELFHYRRLTHTQLWDKYSAYEHWAKIEVPKDKDELAALQDRLRKRFPVDAYNKARR 307          
BLAST of mRNA_P-wetherbeei_contig15121.1.1 vs. uniprot
Match: A0A7S0DY42_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0DY42_9EUKA)

HSP 1 Score: 140 bits (352), Expect = 9.470e-39
Identity = 74/140 (52.86%), Postives = 92/140 (65.71%), Query Frame = 1
Query:    1 FSAGTLTEPSRADLRYVEEALALIEANGIAAPSPIEQRWTATSSAPMSPASAADPAAVHSWVGIIMYLPSDDP---GTRVAITEAFFRYRDLCRDRLWDKYDCAEHWAKIEKPRTDGERETVRRRLRRRYKIDEFNSARR 411
            F  GT T PS ADL Y+ + L ++EA+ + APSPIEQRW+A S APMSPA ++    +H WVGIIMYLP  +      R  IT+ F+ Y DLCR RLW  Y   +HWAKIE P    + E VRRRLR R+ +DE N+ARR
Sbjct:   81 FPTGTRTAPSGADLGYMRDLLTMVEASDLPAPSPIEQRWSAASRAPMSPAHSSGAEDLHCWVGIIMYLPEGEAEVDAVRARITKRFWEYNDLCRHRLWQPYGAHQHWAKIELPDDAADVEVVRRRLRARFPVDELNAARR 220          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15121.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKR7_ECTSI2.000e-4460.58L-galactono-1,4-lactone dehydrogenase n=1 Tax=Ecto... [more]
A0A7J8ZYA1_9ROSI3.990e-4155.47ALO domain-containing protein (Fragment) n=1 Tax=G... [more]
A0A7S0R7R7_9CHLO1.070e-4057.55Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A6J1EAT5_CUCMO2.950e-4054.01L-galactono-1,4-lactone dehydrogenase 1, mitochond... [more]
A0A835ZG22_9STRA7.210e-4061.90L-galactono-1,4-lactone dehydrogenase n=1 Tax=Trib... [more]
R1FS38_EMIHU1.500e-3960.00Mitochondrial L-galactono-1,4-lactone dehydrogenas... [more]
D3JYX1_ACTDE2.880e-3954.41L-galactono-1,4-lactone dehydrogenase (Fragment) n... [more]
A6ZEA2_MALDO7.210e-3954.74Mitochondrial L-galactono-1,4-lactone dehydrogenas... [more]
UPI0010AAC1E28.520e-3954.74LOW QUALITY PROTEIN: L-galactono-1,4-lactone dehyd... [more]
A0A7S0DY42_9EUKA9.470e-3952.86Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15121contigP-wetherbeei_contig15121:71..1366 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FKR7
Preferred nameGLDH
PFAMsALO,FAD_binding_4
Model size411
Max annot lvl2759|Eukaryota
KEGG rclassRC00092,RC00195
KEGG koko:K00225
KEGG ReactionR00640,R07679
KEGG Pathwayko00053,ko01100,ko01110,map00053,map01100,map01110
KEGG ModuleM00114
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0008150,GO:0008152,GO:0009536,GO:0016491,GO:0016627,GO:0016632,GO:0016633,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0055114,GO:0080049
Exons3
Evalue3.27e-45
EggNOG OGsCOG0277@1|root,KOG4730@2759|Eukaryota
Ec32 ortholog descriptionFAD-binding, type 2, subdomain 1
Ec32 orthologEc-21_001860.1
EC1.3.2.3
DescriptionD-arabinono-1,4-lactone oxidase activity
Cds size411
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186045.2872143-CDS-P-wetherbeei_contig15121:70..1911683186045.2872143-CDS-P-wetherbeei_contig15121:70..191Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15121 71..191 -
1683186045.296781-CDS-P-wetherbeei_contig15121:662..8391683186045.296781-CDS-P-wetherbeei_contig15121:662..839Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15121 663..839 -
1683186045.304604-CDS-P-wetherbeei_contig15121:1253..13661683186045.304604-CDS-P-wetherbeei_contig15121:1253..1366Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15121 1254..1366 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15121.1.1prot_P-wetherbeei_contig15121.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15121 71..1366 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15121.1.1

>prot_P-wetherbeei_contig15121.1.1 ID=prot_P-wetherbeei_contig15121.1.1|Name=mRNA_P-wetherbeei_contig15121.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=137bp
FSAGTLTEPSRADLRYVEEALALIEANGIAAPSPIEQRWTATSSAPMSPA
SAADPAAVHSWVGIIMYLPSDDPGTRVAITEAFFRYRDLCRDRLWDKYDC
AEHWAKIEKPRTDGERETVRRRLRRRYKIDEFNSARR
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mRNA from alignment at P-wetherbeei_contig15121:71..1366-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15121.1.1 ID=mRNA_P-wetherbeei_contig15121.1.1|Name=mRNA_P-wetherbeei_contig15121.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1296bp|location=Sequence derived from alignment at P-wetherbeei_contig15121:71..1366- (Phaeothamnion wetherbeei SAG_119_79)
TTTTCGGCAGGGACGCTGACAGAGCCGTCGCGGGCCGACTTGCGCTACGT GGAGGAGGCACTCGCGCTGATCGAGGCCAATGGCATCGCCGCGCCATCCC CCATCGAGCAGCGGTGAGAGAAAAGCCGAGCCGACACTACAGGCGAACCG AACCTGAAACCGGAAACCAGTATCGAAACCGACACCGGAAGCGGAAGCGG AAGACGAGGATGATCCTGCTCGCGTAGGAATGGTAGGCCGGCCGGCGATT CTGATTGGGGAACGGAGAACGAGGAAGTGCGCGGGCTGGCGGGTAAGAAA TATAGTTGAAGTCTTTTTTCGAATAGCGCCGTGCTCCTTGACCCGCCGCC CAGCGGGCTGCATAGCAGCCGCCACAACCGTTGACCGCAGCGGAGGGCCT GCCTGCGCCGGCCGGCTCGTCTGCTGGTTCCTTCCTTTAATTCTGCCCGT GCAAAATGGCTTTCCTCTTATCTGCGGCGGCGGCATCTTTTTTCCCCTTG TTCCTCTCTTCTTCGCTCTGCGGGCAGGTGGACGGCGACAAGCTCCGCCC CGATGAGCCCGGCATCCGCGGCGGACCCGGCCGCCGTCCACAGCTGGGTC GGCATCATCATGTACCTCCCGTCGGACGACCCCGGGACGCGGGTGGCCAT CACAGAGGCGTTCTTCCGCTACCGCGACCTCTGCCGGGATCGCCTCTGGG ACAAGTGAGTCAGTCATTTACTAAGGAGTGGGTCGGCCAGAGTGGCCTGA AGGGTACGGGAAGGGACGGTGCCGGAAGGTAGGAGGGAAATACGGCGCAG GAAGGGCGATGCGGGGAAGGGCGGGGCGGGAAGGTGGGTGCAGGATCGAG GGGAGTACAGACCTTGAACTTACGAACTTGGATGGTTGACGGGAAGAACG GTGCAGGGAAAGAGGGCTCGAGGGATGCAGAGAGGGAAGGGTTAGTCTGG GTGGTTTACTGGCGATCGGGCTATGGGATGTGCATGCTGTGAGGTTCAAA GACGTGGGTTCAAAGACCTGTTCCTGTGCCGTGGGTTCCTTCCATACTGG TTTATTGTATGCGACGGAAAGACGCGCGCGATTTGCTTGCAGGCGCCCGT CACTGCCTGGGTACATTGCAGCATCCGACCACGTTTGGCTTTGCGCCTCT GTAATGAACTGTGCTCTTTCACCAGGTACGACTGCGCGGAGCACTGGGCG AAGATCGAGAAGCCGCGCACCGACGGGGAGCGGGAGACGGTGCGGCGGCG GCTGCGGCGGCGGTACAAGATAGATGAATTCAACAGCGCTAGGCGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15121:71..1366-

>mRNA_P-wetherbeei_contig15121.1.1 ID=mRNA_P-wetherbeei_contig15121.1.1|Name=mRNA_P-wetherbeei_contig15121.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=411bp|location=Sequence derived from alignment at P-wetherbeei_contig15121:71..1366- (Phaeothamnion wetherbeei SAG_119_79)
TTTTCGGCAGGGACGCTGACAGAGCCGTCGCGGGCCGACTTGCGCTACGT
GGAGGAGGCACTCGCGCTGATCGAGGCCAATGGCATCGCCGCGCCATCCC
CCATCGAGCAGCGGTGGACGGCGACAAGCTCCGCCCCGATGAGCCCGGCA
TCCGCGGCGGACCCGGCCGCCGTCCACAGCTGGGTCGGCATCATCATGTA
CCTCCCGTCGGACGACCCCGGGACGCGGGTGGCCATCACAGAGGCGTTCT
TCCGCTACCGCGACCTCTGCCGGGATCGCCTCTGGGACAAGTACGACTGC
GCGGAGCACTGGGCGAAGATCGAGAAGCCGCGCACCGACGGGGAGCGGGA
GACGGTGCGGCGGCGGCTGCGGCGGCGGTACAAGATAGATGAATTCAACA
GCGCTAGGCGA
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