mRNA_P-wetherbeei_contig15110.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15110.1.1
Unique NamemRNA_P-wetherbeei_contig15110.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15110.1.1 vs. uniprot
Match: A0A2D4BGN4_PYTIN (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BGN4_PYTIN)

HSP 1 Score: 216 bits (551), Expect = 6.960e-70
Identity = 103/134 (76.87%), Postives = 111/134 (82.84%), Query Frame = 1
Query:    1 MAAGPPATHVQFETSMGTFTVELYYNHAPIACQNLVGLAAAGYYNGTVCHRVIKGFMCQMGDPTGTGRGGESMWGGKFSDEIMRDLKHTGAGVVSMANAGPNTNGSQFFVTLAPAPWLDGKHTIFGRISSGMQV 402
            M   P ATHV FET++G FTVELYY HAP  C NL  LA  GYYN T+ HR+IK FM Q GDPTGTGRGGES++GGKF DEI + LKHTGAGVVSMANAGPNTNGSQFFVTLAP PWLDGKHTIFGRISSGM+V
Sbjct:    1 MTTAPTATHVVFETTVGDFTVELYYEHAPRTCFNLAELARRGYYNNTIFHRIIKDFMIQGGDPTGTGRGGESVFGGKFDDEISKALKHTGAGVVSMANAGPNTNGSQFFVTLAPTPWLDGKHTIFGRISSGMRV 134          
BLAST of mRNA_P-wetherbeei_contig15110.1.1 vs. uniprot
Match: A0A835Z3Y0_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3Y0_9STRA)

HSP 1 Score: 216 bits (549), Expect = 1.710e-69
Identity = 102/142 (71.83%), Postives = 115/142 (80.99%), Query Frame = 1
Query:    1 MAAGPPATHVQFETSMGTFTVELYYNHAPIACQNLVGLAAAGYYNGTVCHRVIKGFMCQMGDPTGTGRGGESMWGGKFSDEIMRDLKHTGAGVVSMANAGPNTNGSQFFVTLAPAPWLDGKHTIFGRISSGMQVSRNRRMKA 426
            MA   P THV+F+TSMG+FTVELYY HAP +C NL  LA +GYYN TV HR+I+ FM Q GDPTGTGRGG+S++G KF DEI R+LKHTGAGVVSMANAGPNTNGSQFF+TLAP PWLDGKHTI GRIS GM V +   M A
Sbjct:    1 MAQSGPPTHVKFDTSMGSFTVELYYKHAPRSCHNLSELAKSGYYNNTVFHRIIRNFMVQGGDPTGTGRGGQSIYGAKFEDEITRELKHTGAGVVSMANAGPNTNGSQFFITLAPTPWLDGKHTILGRISEGMAVVQRMGMVA 142          
BLAST of mRNA_P-wetherbeei_contig15110.1.1 vs. uniprot
Match: W7U6L7_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U6L7_9STRA)

HSP 1 Score: 215 bits (547), Expect = 9.810e-69
Identity = 99/127 (77.95%), Postives = 108/127 (85.04%), Query Frame = 1
Query:   22 THVQFETSMGTFTVELYYNHAPIACQNLVGLAAAGYYNGTVCHRVIKGFMCQMGDPTGTGRGGESMWGGKFSDEIMRDLKHTGAGVVSMANAGPNTNGSQFFVTLAPAPWLDGKHTIFGRISSGMQV 402
            THV+FETS+G FTVELYY HAP  C N   LA +GYYNGT+ HR+IK FM Q GDPTGTGRGGES++GGKF DEI RDLKHTGAGVVSMANAGPNTNGSQFF+TL P PWLDGKHTIFGRIS GM +
Sbjct:   41 THVRFETSVGNFTVELYYKHAPRTCHNFAELARSGYYNGTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGVVSMANAGPNTNGSQFFLTLGPTPWLDGKHTIFGRISHGMPI 167          
BLAST of mRNA_P-wetherbeei_contig15110.1.1 vs. uniprot
Match: K3WIX2_GLOUD (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WIX2_GLOUD)

HSP 1 Score: 211 bits (537), Expect = 1.040e-67
Identity = 98/133 (73.68%), Postives = 109/133 (81.95%), Query Frame = 1
Query:    4 AAGPPATHVQFETSMGTFTVELYYNHAPIACQNLVGLAAAGYYNGTVCHRVIKGFMCQMGDPTGTGRGGESMWGGKFSDEIMRDLKHTGAGVVSMANAGPNTNGSQFFVTLAPAPWLDGKHTIFGRISSGMQV 402
            AA  P THV  ET++GTFTVELYY HAP  C N   LA  GYYN T+ HR+IK FM Q GDPTGTGRGGES++GGKF DEI ++LKHTGAGV+SMANAGPNTNGSQFFV LAP PWLDGKHT+FGRIS GM+V
Sbjct:    5 AASAPPTHVVVETTVGTFTVELYYEHAPKTCWNFAELARRGYYNNTIFHRIIKDFMIQGGDPTGTGRGGESVYGGKFEDEISKELKHTGAGVLSMANAGPNTNGSQFFVALAPTPWLDGKHTVFGRISDGMKV 137          
BLAST of mRNA_P-wetherbeei_contig15110.1.1 vs. uniprot
Match: A0A835XTW7_9CHLO (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XTW7_9CHLO)

HSP 1 Score: 211 bits (536), Expect = 1.100e-67
Identity = 97/128 (75.78%), Postives = 110/128 (85.94%), Query Frame = 1
Query:   19 ATHVQFETSMGTFTVELYYNHAPIACQNLVGLAAAGYYNGTVCHRVIKGFMCQMGDPTGTGRGGESMWGGKFSDEIMRDLKHTGAGVVSMANAGPNTNGSQFFVTLAPAPWLDGKHTIFGRISSGMQV 402
            A  VQ +TS+GTFTVELYY HAP  C+N   LA  GYY+GT+ HR+I  FM Q GDPTGTGRGGES++GGKF DEI R+LKHTGAG++SMANAGPNTNGSQFFVTLAPAPWLDGKHTIFGR++SGMQV
Sbjct:    3 APQVQIDTSLGTFTVELYYKHAPRTCKNFEELAKKGYYDGTIFHRIIPDFMAQGGDPTGTGRGGESIYGGKFEDEITRELKHTGAGILSMANAGPNTNGSQFFVTLAPAPWLDGKHTIFGRVTSGMQV 130          
BLAST of mRNA_P-wetherbeei_contig15110.1.1 vs. uniprot
Match: A8JGI0_CHLRE (Peptidyl-prolyl cis-trans isomerase n=3 Tax=Chlamydomonas TaxID=3052 RepID=A8JGI0_CHLRE)

HSP 1 Score: 210 bits (535), Expect = 1.560e-67
Identity = 95/125 (76.00%), Postives = 109/125 (87.20%), Query Frame = 1
Query:   28 VQFETSMGTFTVELYYNHAPIACQNLVGLAAAGYYNGTVCHRVIKGFMCQMGDPTGTGRGGESMWGGKFSDEIMRDLKHTGAGVVSMANAGPNTNGSQFFVTLAPAPWLDGKHTIFGRISSGMQV 402
            VQ +TSMG+FTVELYY HAP  C+N   LA  GYY+GT+ HR+I+ FMCQ GDPTGTGRGGES++GGKF DEI RDLKHTGAG++SMAN+GPNTNGSQFFVTLAP PWLDGKHTIFGR++SGM V
Sbjct:    6 VQIDTSMGSFTVELYYKHAPRTCKNFEELAKKGYYDGTIFHRIIRDFMCQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGILSMANSGPNTNGSQFFVTLAPTPWLDGKHTIFGRVTSGMAV 130          
BLAST of mRNA_P-wetherbeei_contig15110.1.1 vs. uniprot
Match: A0A7S2UYX2_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYX2_9STRA)

HSP 1 Score: 210 bits (535), Expect = 1.900e-67
Identity = 99/127 (77.95%), Postives = 107/127 (84.25%), Query Frame = 1
Query:   22 THVQFETSMGTFTVELYYNHAPIACQNLVGLAAAGYYNGTVCHRVIKGFMCQMGDPTGTGRGGESMWGGKFSDEIMRDLKHTGAGVVSMANAGPNTNGSQFFVTLAPAPWLDGKHTIFGRISSGMQV 402
            THV+FETSMG F VELYYNHAP  C N   L+  GYYN    HRVIK FM Q GDPTGTGRGGES++GGKF DE+ RDLKHTGAG++SMANAGPNTNGSQFF+TLAP PWLDGKHTIFGRISSGMQV
Sbjct:    5 THVKFETSMGVFEVELYYNHAPKTCLNFSELSKRGYYNNVGFHRVIKDFMVQGGDPTGTGRGGESIFGGKFEDELTRDLKHTGAGILSMANAGPNTNGSQFFMTLAPTPWLDGKHTIFGRISSGMQV 131          
BLAST of mRNA_P-wetherbeei_contig15110.1.1 vs. uniprot
Match: A0A6T7JJD9_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7JJD9_9STRA)

HSP 1 Score: 211 bits (536), Expect = 2.750e-67
Identity = 98/133 (73.68%), Postives = 109/133 (81.95%), Query Frame = 1
Query:    4 AAGPPATHVQFETSMGTFTVELYYNHAPIACQNLVGLAAAGYYNGTVCHRVIKGFMCQMGDPTGTGRGGESMWGGKFSDEIMRDLKHTGAGVVSMANAGPNTNGSQFFVTLAPAPWLDGKHTIFGRISSGMQV 402
            + G P THVQFETS+GTF VELY+ H P    N+  LA  GYYNGT+ HRVI+ FM Q GDPTGTGRGGES++GGKF DEI R+LKHTGAGVVSMAN+GPNTNGSQFF+TL P PWLDGKHTIFGRI SGM V
Sbjct:    5 SGGSPYTHVQFETSIGTFVVELYHKHTPRTAYNIAALAETGYYNGTIFHRVIRDFMIQGGDPTGTGRGGESIYGGKFEDEITRNLKHTGAGVVSMANSGPNTNGSQFFITLKPTPWLDGKHTIFGRIYSGMGV 137          
BLAST of mRNA_P-wetherbeei_contig15110.1.1 vs. uniprot
Match: A0A024GVR4_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GVR4_9STRA)

HSP 1 Score: 209 bits (533), Expect = 3.830e-67
Identity = 99/134 (73.88%), Postives = 109/134 (81.34%), Query Frame = 1
Query:    1 MAAGPPATHVQFETSMGTFTVELYYNHAPIACQNLVGLAAAGYYNGTVCHRVIKGFMCQMGDPTGTGRGGESMWGGKFSDEIMRDLKHTGAGVVSMANAGPNTNGSQFFVTLAPAPWLDGKHTIFGRISSGMQV 402
            M + PP THV  ETS+GTFTVELYY +AP AC N   LA+ GYYN T+ HR+IK FM Q GDP+GTGRGGES++GG F DEI   LKHTGAG+VSMANAG NTNGSQFFVTLAP PWLDGKHTIFGRIS GMQV
Sbjct:    1 MTSSPPVTHVMVETSIGTFTVELYYQNAPNACHNFSQLASNGYYNNTIFHRIIKDFMIQGGDPSGTGRGGESIFGGHFDDEIDSSLKHTGAGIVSMANAGKNTNGSQFFVTLAPTPWLDGKHTIFGRISDGMQV 134          
BLAST of mRNA_P-wetherbeei_contig15110.1.1 vs. uniprot
Match: D8LDW9_ECTSI (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDW9_ECTSI)

HSP 1 Score: 209 bits (531), Expect = 1.040e-66
Identity = 101/140 (72.14%), Postives = 112/140 (80.00%), Query Frame = 1
Query:    7 AGPPATHVQFETSMGTFTVELYYNHAPIACQNLVGLAAAGYYNGTVCHRVIKGFMCQMGDPTGTGRGGESMWGGKFSDEIMRDLKHTGAGVVSMANAGPNTNGSQFFVTLAPAPWLDGKHTIFGRISSGMQVSRNRRMKA 426
            +G   THV F+TS+G+FTVELY  HAP +C N+  LA  GYY+ T+ HRVIK FM Q GDPTGTGRGGES +GGKF DEI RDLKHTGAGVVSMAN+GPNTNGSQFFVTL P PWLDGKHTI GRISSGM+V R   M A
Sbjct:    2 SGNGPTHVHFQTSVGSFTVELYSQHAPKSCHNMGELARRGYYDNTIFHRVIKDFMVQGGDPTGTGRGGESSFGGKFEDEIRRDLKHTGAGVVSMANSGPNTNGSQFFVTLGPTPWLDGKHTILGRISSGMKVVRRMGMVA 141          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15110.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D4BGN4_PYTIN6.960e-7076.87Peptidyl-prolyl cis-trans isomerase n=2 Tax=Pythiu... [more]
A0A835Z3Y0_9STRA1.710e-6971.83Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribon... [more]
W7U6L7_9STRA9.810e-6977.95Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nannoc... [more]
K3WIX2_GLOUD1.040e-6773.68Peptidyl-prolyl cis-trans isomerase n=2 Tax=Pythia... [more]
A0A835XTW7_9CHLO1.100e-6775.78Peptidyl-prolyl cis-trans isomerase n=1 Tax=Edapho... [more]
A8JGI0_CHLRE1.560e-6776.00Peptidyl-prolyl cis-trans isomerase n=3 Tax=Chlamy... [more]
A0A7S2UYX2_9STRA1.900e-6777.95Peptidyl-prolyl cis-trans isomerase n=1 Tax=Fibroc... [more]
A0A6T7JJD9_9STRA2.750e-6773.68Peptidyl-prolyl cis-trans isomerase n=1 Tax=Atthey... [more]
A0A024GVR4_9STRA3.830e-6773.88Peptidyl-prolyl cis-trans isomerase n=1 Tax=Albugo... [more]
D8LDW9_ECTSI1.040e-6672.14Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectoca... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15110contigP-wetherbeei_contig15110:50..1303 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog42099.EPrPV00000020196
PFAMsAdaptin_N,B2-adapt-app_C
Model size441
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.35e-63
EggNOG OGsCOG0652@1|root,COG5096@1|root,KOG4308@1|root,KOG0881@2759|Eukaryota,KOG1061@2759|Eukaryota,KOG4308@2759|Eukaryota,1MAM6@121069|Pythiales
Ec32 ortholog descriptionCyclophilin-like domain
Ec32 orthologEc-23_003510.1
DescriptionAP-2 complex subunit beta. Source PGD
Cds size441
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186045.028247-CDS-P-wetherbeei_contig15110:49..1771683186045.028247-CDS-P-wetherbeei_contig15110:49..177Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15110 50..177 -
1683186045.0394278-CDS-P-wetherbeei_contig15110:432..5461683186045.0394278-CDS-P-wetherbeei_contig15110:432..546Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15110 433..546 -
1683186045.0495443-CDS-P-wetherbeei_contig15110:681..8321683186045.0495443-CDS-P-wetherbeei_contig15110:681..832Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15110 682..832 -
1683186045.0603225-CDS-P-wetherbeei_contig15110:1255..13031683186045.0603225-CDS-P-wetherbeei_contig15110:1255..1303Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15110 1256..1303 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15110.1.1prot_P-wetherbeei_contig15110.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15110 50..1303 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15110.1.1

>prot_P-wetherbeei_contig15110.1.1 ID=prot_P-wetherbeei_contig15110.1.1|Name=mRNA_P-wetherbeei_contig15110.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=147bp
MAAGPPATHVQFETSMGTFTVELYYNHAPIACQNLVGLAAAGYYNGTVCH
RVIKGFMCQMGDPTGTGRGGESMWGGKFSDEIMRDLKHTGAGVVSMANAG
PNTNGSQFFVTLAPAPWLDGKHTIFGRISSGMQVSRNRRMKAGSFS*
back to top

mRNA from alignment at P-wetherbeei_contig15110:50..1303-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15110.1.1 ID=mRNA_P-wetherbeei_contig15110.1.1|Name=mRNA_P-wetherbeei_contig15110.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1254bp|location=Sequence derived from alignment at P-wetherbeei_contig15110:50..1303- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGCGGGACCTCCGGCCACGCACGTGCAATTCGAAACGTCCATGGT GAGTTGACCCCCCATCTTCTCGCTACCCCCTTTCTTGGCTTTTGGAGAGG CCTCATAATGAAGAAGATAATCCCGTAGAATGATTAAAATGATTACTGCG ATGGTATTTCAATCGCGGTTGCCGTGCGTGGGACGCGAGGGTTTTAGCGT GTGGTACCAGTAGGGTGGAAAGAGAGGCGCACAAACAAACGTCAGCAGAT GTTTTGATAGAGGACTGTCAAGGAGGCATCTCTGCGAACAGATTTTACGG CGTAACTATTGATCGACGGCCGCCAGCATTGCTGTTGCTTTGTTTTGGGT TCTGCTATTGAATGTCCTATGGCGCCTCGCGTGCGAGACAAAATGCTTGT TTCATTCATCATCATTTCACTACTCCTCTTCATTGACTCCCGAACTCGTC GTCTTGTTATTGTCGCTGCAGGGCACCTTTACCGTAGAGCTGTATTATAA CCATGCGCCGATTGCATGCCAAAACTTGGTGGGGCTGGCGGCTGCCGGAT ATTACAACGGCACCGTTTGCCACCGGGTCATCAAAGGGTTCATGTGCCAG ATGGGCGACCCGACTGGAACGGGTAATGTTTGTAAATTCTGTGAATTCTT TAGAACATCGACCGACCCTAAACGCTGTGCTGGATTAAAAGTCAACATTA AAATTCAGCATGCTCCCTTTCGTCTCCTCTTCTTTGGCGCCGCGCGGTCT CCGGCAGGACGCGGCGGCGAGAGCATGTGGGGCGGGAAATTCAGCGACGA GATCATGCGAGATTTGAAGCACACCGGCGCGGGGGTCGTGTCGATGGCAA ACGCCGGACCCAACACGAACGGTGAGATCATCTGCAGCCGGACGGAGGTA GCATTGTAGCTTTAGCCGGAGGGAATTCGAATAGTAGTTTCAGTCGGAAA GCGCCATTGCTCAACTTCCGTCCCACCAGACGTAGCACCATGTTGATTTT GGAAGCTGGGCCCATCTCTTCCTTTCCTTTACACAGATTACATTAGACTA GCGCCTGAATGGGCCAGTTGTCAATTGTCTCACCTCTCGTCCATTGGTTG TGCTTGGTCGAACATGCGTGCCACAGGCTCACAGTTCTTTGTTACTTTGG CGCCGGCGCCATGGCTCGACGGCAAGCACACCATTTTTGGGAGGATTTCC TCCGGCATGCAGGTCAGTCGCAACCGGCGGATGAAGGCGGGGTCTTTCTC ATAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig15110:50..1303-

>mRNA_P-wetherbeei_contig15110.1.1 ID=mRNA_P-wetherbeei_contig15110.1.1|Name=mRNA_P-wetherbeei_contig15110.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=441bp|location=Sequence derived from alignment at P-wetherbeei_contig15110:50..1303- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGCGGGACCTCCGGCCACGCACGTGCAATTCGAAACGTCCATGGG
CACCTTTACCGTAGAGCTGTATTATAACCATGCGCCGATTGCATGCCAAA
ACTTGGTGGGGCTGGCGGCTGCCGGATATTACAACGGCACCGTTTGCCAC
CGGGTCATCAAAGGGTTCATGTGCCAGATGGGCGACCCGACTGGAACGGG
ACGCGGCGGCGAGAGCATGTGGGGCGGGAAATTCAGCGACGAGATCATGC
GAGATTTGAAGCACACCGGCGCGGGGGTCGTGTCGATGGCAAACGCCGGA
CCCAACACGAACGGCTCACAGTTCTTTGTTACTTTGGCGCCGGCGCCATG
GCTCGACGGCAAGCACACCATTTTTGGGAGGATTTCCTCCGGCATGCAGG
TCAGTCGCAACCGGCGGATGAAGGCGGGGTCTTTCTCATAA
back to top