mRNA_P-wetherbeei_contig151.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig151.1.1 vs. uniprot
Match: A0A2H3KNG0_9CHLR (Uncharacterized protein n=3 Tax=Candidatus Chloroploca TaxID=1579476 RepID=A0A2H3KNG0_9CHLR) HSP 1 Score: 64.7 bits (156), Expect = 2.170e-7 Identity = 55/209 (26.32%), Postives = 91/209 (43.54%), Query Frame = 3
Query: 525 PSDIVTLIFDPATGTLGSPKMRLSLGYNPSAITIDATGRWLAVSYFMAGGPGGGVGIFPVLEHEDAVLPATGYLRWDAGEPFAPPISEEMRRQFVDARFGLPDGEIAGDGWQPCPSMVHDVSFDPTINSFLLAVDFGLSRVLCFAFDATTGAVGPEPVNILQLPLMSGPRSICWHPTGTVVYVSLQSEPGVAVVGFDAATGMLELRQVV 1151
P + +L D A+ +L + S G P +T+D G W V+ + GG VG+ P+ + VL G LR D + + E R+Q ++ DG F++A D G+ ++ + D G + P + + +GPR +CWHP G V+YV+ + + +AV G+D G L RQ++
Sbjct: 70 PGGVTSLRLDRASHSLTILGWQRSGGDWPCHVTLDPRGTWAIVANY----GGGSVGLLPLTA--EGVL---GPLR-DVAQHEGRSVDPE-RQQHPHPHAST----VSADG------------------RFVIASDLGIDQLRIYTLDTPHGGLTPHTHTLARRG--AGPRHLCWHPNGRVLYVANELDNTIAVYGYDPGKGTLVERQII 243
BLAST of mRNA_P-wetherbeei_contig151.1.1 vs. uniprot
Match: A0A1H3UHD1_9PSED (6-phosphogluconolactonase, cycloisomerase 2 family n=23 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A1H3UHD1_9PSED) HSP 1 Score: 63.9 bits (154), Expect = 5.040e-7 Identity = 52/213 (24.41%), Postives = 88/213 (41.31%), Query Frame = 3
Query: 528 SDIVTLIFDPATGTLGSPKMRLSLGYNPSAITIDATGRWLAVSYFMAGGPGGGVGIFPVLEHEDAVLPATGYLRWDAGEPFAPPISEEMRRQFVDARFGLPDGEIAGDGWQPCPSMVHDVSFDPTINSFLLAVDFGLSRVLCFAFDATTGAVGPEPVNILQLPLMSGPRSICWHPTGTVVYVSLQSEPGVAVVGFDAATGMLELRQVVAAPPS 1166
S++ + D TG L + G NP +++D TG++LAV+ + GG IFP+ +D L +L GEP + + S H + FDP+ FL+ D GL V + G V++++ +GPR + + P G YV + + V +DA G L+ +++++ PS
Sbjct: 120 SEVSSFAIDEKTGELTRLNTVGTQGKNPVHLSVDPTGKFLAVANYATGG----FAIFPI--QDDGSLGELAHLESLPGEPGPHKVEQSS-------------------------SHPHMIPFDPS-GRFLVIPDKGLDGVFVYRVQQNNAKYGATQVSMVKAREGAGPRHVVFTPAGKNAYVVNELDSSVTGYAYDADQGSLQPQEIISTLPS 300
BLAST of mRNA_P-wetherbeei_contig151.1.1 vs. uniprot
Match: UPI001676A0D0 (lactonase family protein n=1 Tax=Streptomyces TaxID=1883 RepID=UPI001676A0D0) HSP 1 Score: 59.7 bits (143), Expect = 1.130e-5 Identity = 40/122 (32.79%), Postives = 54/122 (44.26%), Query Frame = 3
Query: 807 VDARFGLPDGEIAGDGWQPCPSMV----HDVSFDPTINSFLLAVDFGLSRVLCFAFDATT---GAVGPEPVNILQLPLMSGPRSICWHPTGTVVYVSLQSEPGVAVVGFDAATGMLELRQVV 1151
D R G + G P P H V DP+ F L DFG RV + +D TT A P+ SGPR + +HP G VY+ + + + +DAA G+L LRQV+
Sbjct: 168 ADGRLGGVVSRVQDTGSGPHPRQAGPHPHHVVVDPS-RRFALVADFGADRVFVYDYDRTTHRLSAGPPDGPGAYATAPGSGPRRLAFHPNGQAVYLLNELTADIQTLRWDAARGVLTLRQVL 288
BLAST of mRNA_P-wetherbeei_contig151.1.1 vs. uniprot
Match: A0A0D9AVF2_PSEST (3-carboxymuconate cyclase n=9 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A0D9AVF2_PSEST) HSP 1 Score: 57.8 bits (138), Expect = 4.230e-5 Identity = 52/209 (24.88%), Postives = 81/209 (38.76%), Query Frame = 3
Query: 534 IVTLIFDPATGTLGSPKMRLSLGYNPSAITIDATGRWLAVS-YFMAGGPGGGVGIFPVLEHEDAVLPATGYLRWDAGEPFAPPISEEMRRQFVDARFGLPDGEIAGDGWQPCPSMVHDVSFDPTINSFLLAVDFGLSRVLCFAFDATTGA--VGPEPVNILQLPLMSGPRSICWHPTGTVVYVSLQSEPGVAVVGFDAATGMLELRQVV 1151
+ I P +G L +L+LG P+ +++ GR+L VS Y + PGG + + P + + ++P T A E E + V + PDG+ L D G R+ + +D + P + LP SGPR + + P G Y +L+ VA FD G L RQ+V
Sbjct: 92 VSAFIMAPNSGKLSPLAQQLTLGDEPTHLSLSRDGRYLFVSNYGSSANPGGNLAVMPTAK-DGTLMPVTQIAAHQASEVHP----ERQQSAHVHSAVMSPDGKT------------------------LFVSDLGADRIFVYRYDPANAERPLSPADPAFIALPEGSGPRHLVFSPDGLQAYATLELSAQVA--RFDHVDGGLVQRQLV 269
BLAST of mRNA_P-wetherbeei_contig151.1.1 vs. uniprot
Match: A0A3D2M2J6_PSESP (3-carboxymuconate cyclase n=1 Tax=Pseudomonas sp. TaxID=306 RepID=A0A3D2M2J6_PSESP) HSP 1 Score: 57.0 bits (136), Expect = 7.320e-5 Identity = 51/209 (24.40%), Postives = 82/209 (39.23%), Query Frame = 3
Query: 534 IVTLIFDPATGTLGSPKMRLSLGYNPSAITIDATGRWLAVS-YFMAGGPGGGVGIFPVLEHEDAVLPATGYLRWDAGEPFAPPISEEMRRQFVDARFGLPDGEIAGDGWQPCPSMVHDVSFDPTINSFLLAVDFGLSRVLCFAFDATTGA--VGPEPVNILQLPLMSGPRSICWHPTGTVVYVSLQSEPGVAVVGFDAATGMLELRQVV 1151
+ + PA+G L +++LG P+ +++ GR+L VS Y PGG + + P + + + P T A E E + V + PDG+ L D G R+ + +D + P ++LP SGPR + + P G+ Y +L+ VA FD G L RQ+V
Sbjct: 88 VSAFMMAPASGQLSPLAQQITLGDEPTHLSLSRDGRYLFVSNYGSNANPGGSLAVIPTAK-DGTLSPVTQIATHKASEKHP----ERQQSAHVHSAVMSPDGKT------------------------LFVSDLGADRIFLYRYDPANAERPLSPADPASIRLPDGSGPRHLVFSPNGSQAYATLELSAQVA--RFDHVDGSLVQRQLV 265
BLAST of mRNA_P-wetherbeei_contig151.1.1 vs. uniprot
Match: A0A1C2DBQ5_9PSED (3-carboxymuconate cyclase n=11 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A1C2DBQ5_9PSED) HSP 1 Score: 57.0 bits (136), Expect = 7.580e-5 Identity = 55/205 (26.83%), Postives = 82/205 (40.00%), Query Frame = 3
Query: 549 FDPATGTLGSPKMRLSLGYNPSAITIDATGRWLAVSYFMAG-GPGGGVGIFPVLEHEDAVLPATGYLRWDAGEPFAPPISEEMRRQFVDARFGLPDGEIAGDGWQPCPSMVHDVSFDPTINSFLLAVDFGLSRVLCFAFDATTGA---VGPEPVNILQLPLMSGPRSICWHPTGTVVYVSLQSEPGVAVVGFDAATGMLELRQVV 1151
DPATG L ++SLG P+ +++ GR+L VS + +G PGG + + PV E + + P T A E + + V + P+G+ L D G R+ + +D EP I L SGPR + + P G+ Y +L+ VA FD G L RQ+V
Sbjct: 103 IDPATGRLSPLGQQISLGDEPTHLSLSHDGRYLFVSNYGSGPNPGGSLAVMPVGE-DGTLQPVTQLATHKASEVHP----QRQKSAHVHSAVLSPNGKT------------------------LFVSDLGADRIFAYRYDPANPERPLTAAEPAAITLL-AGSGPRHLVFSPDGSQAYATLELSAQVA--RFDHVDGTLVQRQLV 275 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig151.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig151.1.1 >prot_P-wetherbeei_contig151.1.1 ID=prot_P-wetherbeei_contig151.1.1|Name=mRNA_P-wetherbeei_contig151.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=518bp MAVPGHANSLLFSSTWLHALELKATPHHGPVGVASFRHCERTAVFSTFCFback to top mRNA from alignment at P-wetherbeei_contig151:230..2765- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig151.1.1 ID=mRNA_P-wetherbeei_contig151.1.1|Name=mRNA_P-wetherbeei_contig151.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2536bp|location=Sequence derived from alignment at P-wetherbeei_contig151:230..2765- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig151:230..2765- >mRNA_P-wetherbeei_contig151.1.1 ID=mRNA_P-wetherbeei_contig151.1.1|Name=mRNA_P-wetherbeei_contig151.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1554bp|location=Sequence derived from alignment at P-wetherbeei_contig151:230..2765- (Phaeothamnion wetherbeei SAG_119_79)back to top |