prot_P-wetherbeei_contig151.6.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig151.6.1
Unique Nameprot_P-wetherbeei_contig151.6.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length456
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig151.6.1 vs. uniprot
Match: A0A2U1RYC1_9PROT (Cell shape determination protein CcmA n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A2U1RYC1_9PROT)

HSP 1 Score: 53.9 bits (128), Expect = 6.200e-5
Identity = 35/122 (28.69%), Postives = 59/122 (48.36%), Query Frame = 0 
Query:  277 AGKVMLVGHGVSIDGLEVEDAEIFVVDGRVLNGRV-QANEVRVTGTFQGSLECRHIQVTKGATXXXXXXXXXXXXXXXXXXALVVRVKLSLHVAGRARSFVRYGDVVAAPGSRLIGDVGVYG 397
            AG  ++VG  + + G+E++D +  VV+GRV    V +A ++   G+F+G+ +    ++ +GA                    L  R +L +H  GR    VRYG ++   G  + GDVG  G
Sbjct:   57 AGSRLIVGPNIKLKGVEIDDCDTLVVEGRVEATMVSRAIQIAEQGSFKGTADIEVAEI-RGA----------------FEGELTARGRLVIHATGRVTGKVRYGRLLVQEGGEITGDVGTLG 161
[Close]
BLAST of mRNA_P-wetherbeei_contig151.6.1 vs. uniprot
Match: J2M1P2_9BURK (Integral membrane protein CcmA involved in cell shape determination n=10 Tax=Herbaspirillum TaxID=963 RepID=J2M1P2_9BURK)

HSP 1 Score: 53.5 bits (127), Expect = 8.840e-5
Identity = 41/137 (29.93%), Postives = 65/137 (47.45%), Query Frame = 0 
Query:  278 GKVMLVGHGVSIDGLEVEDAEIFVVDGRV---LNGRVQANEVRVTGTFQGSLECRHIQVTKGATXXXXXXXXXXXXXXXXXXALVVRVKLSLHVAGRARSFVRYGDVVAAPGSRLIGDVGVYGGSSDESPLRQLNCA 411
            G  ++VG  + + G+E+ D +  VV+GRV   ++ RV   ++   G F+GS E    ++                        L VR KL ++ +G+    +RYG +V   G +L GDV V GGSS++  L Q   A
Sbjct:   57 GSKLIVGPNIKLKGVEINDCDTLVVEGRVEATMDSRVI--QIAEKGAFKGSAEIDLAEIR-----------------GDFDGELTVRQKLVIYSSGKVSGKIRYGKLVIEEGGQLSGDVQV-GGSSEQRELLQAKTA 173
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig151.6.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2U1RYC1_9PROT6.200e-528.69Cell shape determination protein CcmA n=1 Tax=Beta... [more]
J2M1P2_9BURK8.840e-529.93Integral membrane protein CcmA involved in cell sh... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007607Bactofilin A/BPFAMPF04519Bactofilincoord: 306..393
e-value: 1.1E-10
score: 41.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..164
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 436..456
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 129..156
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..67

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig151contigP-wetherbeei_contig151:6980..8670 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig151.6.1mRNA_P-wetherbeei_contig151.6.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig151 6868..8670 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig151.6.1 ID=prot_P-wetherbeei_contig151.6.1|Name=mRNA_P-wetherbeei_contig151.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=456bp
MFRRKLSLRAIGEKQPKPAAAIVTGAAVNEPAVASAPAATAQATAGAGRS
QRFRMRRRSEGDSGNKASAVVFTPVMLDSIIRSALDPKPRGAEAGKSRAP
STTPATPELGSPARGSARSGARAGDPSRGNRTRSMSSLFGRPTSVHQPQQ
HQPQTAMAAAAAAGGSPPLATPAATAAAEAKIETTAVPGSAAIRTGNGAF
AMDDDFGAMTDNAAGVAVVAAAAAAVSCTALSTSSGTAPGNTSAVLATLT
GGSSSTADVAGPAAGGTAGAAVGGATAGKVMLVGHGVSIDGLEVEDAEIF
VVDGRVLNGRVQANEVRVTGTFQGSLECRHIQVTKGATVIGRVVADTADV
AGRVEGALVVRVKLSLHVAGRARSFVRYGDVVAAPGSRLIGDVGVYGGSS
DESPLRQLNCARRAAEELLARRSVAAARSPVKYVRGGNSSGNASGNAGSG
GASGAA
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007607BacA/B