mRNA_P-wetherbeei_contig151.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig151.6.1
Unique NamemRNA_P-wetherbeei_contig151.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig151.6.1 vs. uniprot
Match: A0A2U1RYC1_9PROT (Cell shape determination protein CcmA n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A2U1RYC1_9PROT)

HSP 1 Score: 53.9 bits (128), Expect = 6.840e-5
Identity = 35/122 (28.69%), Postives = 59/122 (48.36%), Query Frame = 2 
Query:  941 AGKVMLVGHGVSIDGLEVEDAEIFVVDGRVLNGRV-QANEVRVTGTFQGSLECRHIQVTKGATXXXXXXXXXXXXXXXXXXALVVRVKLSLHVAGRARSFVRYGDVVAAPGSRLIGDVGVYG 1303
            AG  ++VG  + + G+E++D +  VV+GRV    V +A ++   G+F+G+ +    ++ +GA                    L  R +L +H  GR    VRYG ++   G  + GDVG  G
Sbjct:   57 AGSRLIVGPNIKLKGVEIDDCDTLVVEGRVEATMVSRAIQIAEQGSFKGTADIEVAEI-RGA----------------FEGELTARGRLVIHATGRVTGKVRYGRLLVQEGGEITGDVGTLG 161
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BLAST of mRNA_P-wetherbeei_contig151.6.1 vs. uniprot
Match: J2M1P2_9BURK (Integral membrane protein CcmA involved in cell shape determination n=10 Tax=Herbaspirillum TaxID=963 RepID=J2M1P2_9BURK)

HSP 1 Score: 53.5 bits (127), Expect = 9.770e-5
Identity = 41/137 (29.93%), Postives = 65/137 (47.45%), Query Frame = 2 
Query:  944 GKVMLVGHGVSIDGLEVEDAEIFVVDGRV---LNGRVQANEVRVTGTFQGSLECRHIQVTKGATXXXXXXXXXXXXXXXXXXALVVRVKLSLHVAGRARSFVRYGDVVAAPGSRLIGDVGVYGGSSDESPLRQLNCA 1345
            G  ++VG  + + G+E+ D +  VV+GRV   ++ RV   ++   G F+GS E    ++                        L VR KL ++ +G+    +RYG +V   G +L GDV V GGSS++  L Q   A
Sbjct:   57 GSKLIVGPNIKLKGVEINDCDTLVVEGRVEATMDSRVI--QIAEKGAFKGSAEIDLAEIR-----------------GDFDGELTVRQKLVIYSSGKVSGKIRYGKLVIEEGGQLSGDVQV-GGSSEQRELLQAKTA 173
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig151.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2U1RYC1_9PROT6.840e-528.69Cell shape determination protein CcmA n=1 Tax=Beta... [more]
J2M1P2_9BURK9.770e-529.93Integral membrane protein CcmA involved in cell sh... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig151contigP-wetherbeei_contig151:6868..8670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1144319.PMI16_01575
PFAMsBactofilin
Model size1481
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.45e-05
EggNOG OGsCOG1664@1|root,COG1664@2|Bacteria,1N26P@1224|Proteobacteria,2VSIS@28216|Betaproteobacteria,474FV@75682|Oxalobacteraceae
DescriptionIntegral membrane protein CcmA involved in cell shape determination
Cds size1368
COG categoryM
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186044.4857135-UTR-P-wetherbeei_contig151:6867..69791683186044.4857135-UTR-P-wetherbeei_contig151:6867..6979Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig151 6868..6979 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186044.5014765-CDS-P-wetherbeei_contig151:6979..79751683186044.5014765-CDS-P-wetherbeei_contig151:6979..7975Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig151 6980..7975 +
1683186044.512106-CDS-P-wetherbeei_contig151:8298..86701683186044.512106-CDS-P-wetherbeei_contig151:8298..8670Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig151 8299..8670 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig151.6.1prot_P-wetherbeei_contig151.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig151 6980..8670 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig151.6.1

>prot_P-wetherbeei_contig151.6.1 ID=prot_P-wetherbeei_contig151.6.1|Name=mRNA_P-wetherbeei_contig151.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=456bp
MFRRKLSLRAIGEKQPKPAAAIVTGAAVNEPAVASAPAATAQATAGAGRS
QRFRMRRRSEGDSGNKASAVVFTPVMLDSIIRSALDPKPRGAEAGKSRAP
STTPATPELGSPARGSARSGARAGDPSRGNRTRSMSSLFGRPTSVHQPQQ
HQPQTAMAAAAAAGGSPPLATPAATAAAEAKIETTAVPGSAAIRTGNGAF
AMDDDFGAMTDNAAGVAVVAAAAAAVSCTALSTSSGTAPGNTSAVLATLT
GGSSSTADVAGPAAGGTAGAAVGGATAGKVMLVGHGVSIDGLEVEDAEIF
VVDGRVLNGRVQANEVRVTGTFQGSLECRHIQVTKGATVIGRVVADTADV
AGRVEGALVVRVKLSLHVAGRARSFVRYGDVVAAPGSRLIGDVGVYGGSS
DESPLRQLNCARRAAEELLARRSVAAARSPVKYVRGGNSSGNASGNAGSG
GASGAA
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mRNA from alignment at P-wetherbeei_contig151:6868..8670+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig151.6.1 ID=mRNA_P-wetherbeei_contig151.6.1|Name=mRNA_P-wetherbeei_contig151.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1803bp|location=Sequence derived from alignment at P-wetherbeei_contig151:6868..8670+ (Phaeothamnion wetherbeei SAG_119_79)
TGAAGGGGGAAAACGGCAACCACCCTGTACAGCGCCGGAATCTTGTATTC
TACAGTCGTCGAAGCGCCCAGAGAGCGGCTGTTGAGAAATAGTGGATTGA
CGCTACGGTCTCATGTTTCGCAGGAAGCTCTCGTTGCGCGCCATCGGCGA
GAAACAGCCAAAGCCGGCAGCAGCAATAGTAACCGGAGCTGCGGTCAACG
AGCCAGCCGTGGCGTCTGCCCCAGCCGCGACGGCTCAAGCGACGGCAGGA
GCCGGCCGCAGCCAGCGCTTCCGGATGCGCCGACGCAGCGAAGGCGACAG
TGGTAACAAGGCCAGCGCGGTCGTATTCACGCCTGTGATGCTCGACAGCA
TCATTCGCAGTGCTCTAGACCCCAAACCTCGTGGCGCCGAGGCAGGCAAG
AGCCGCGCCCCCAGCACGACACCGGCGACCCCGGAGCTCGGTTCGCCCGC
GAGGGGCAGCGCGCGCAGCGGCGCGCGAGCTGGCGATCCGAGCCGCGGCA
ATAGGACGCGCTCCATGAGCTCGCTCTTCGGGAGACCAACCTCCGTGCAC
CAACCACAGCAGCATCAACCGCAGACGGCGATGGCGGCGGCGGCGGCGGC
GGGAGGCTCCCCGCCCCTTGCGACGCCGGCGGCGACGGCAGCCGCAGAGG
CAAAAATAGAGACGACGGCGGTTCCCGGCTCTGCGGCAATTAGAACCGGC
AACGGCGCTTTCGCGATGGATGACGACTTTGGTGCGATGACGGACAACGC
CGCCGGGGTCGCCGTTGTCGCCGCCGCTGCTGCCGCCGTCTCCTGCACTG
CTCTTTCGACCTCCTCTGGAACCGCTCCCGGTAATACGTCGGCTGTTCTG
GCTACCCTCACTGGCGGCAGCAGCTCAACGGCCGACGTGGCGGGACCGGC
GGCGGGAGGAACGGCGGGCGCGGCGGTGGGCGGCGCGACCGCGGGCAAGG
TGATGCTAGTGGGCCACGGGGTGTCGATAGACGGCCTCGAGGTGGAGGAC
GCAGAGATCTTTGTGGTGGACGGACGAGTTCTCAACGGACGCGTTCAGGC
CAACGAGGTGCGCGTCACCGGAACCTTCCAGGGCAGCCTTGAGTGCCGCC
ACATCCAGGTGAGGGAAGAGATGAGCGGAGACGAGGGGGAAGGAGGAGGG
ATATTCTCCAGCAATTGTTACTTGTACTCGGAAGCATCGATTCAAGGAAG
CTGCCGGGGGCAGTGTCAAAGATGTTTGCCGCAGTTGTACGACAGGCATT
TTTTGGAGTGAATCTGCAAAAGGCTTTGTAGATGGGCTCGATACAACAGT
AGAATCCCACATCCGATGCCGTCTGCCAACACCTCACCCAGTATCCAAGC
TGCCTGCCAACCGCAATCTCCGTCCGTCGTTGTTGCAAACCGAAAACTCC
GATACATCCTTCTGCCGCATCTACGAAGCAGGTGACCAAGGGTGCGACCG
TGATTGGGCGGGTGGTGGCGGACACCGCGGACGTCGCCGGACGTGTGGAG
GGCGCCCTCGTCGTCCGCGTCAAGCTCAGCCTCCACGTAGCCGGCCGCGC
GCGCAGCTTCGTCCGCTACGGCGACGTCGTCGCCGCACCGGGCAGCCGCC
TCATTGGCGACGTCGGCGTCTACGGTGGCTCGAGCGACGAGAGCCCGCTG
CGGCAGCTCAACTGCGCTCGGCGGGCTGCCGAGGAGCTGTTGGCGCGCCG
CTCCGTGGCGGCGGCGCGTTCCCCGGTCAAGTATGTGCGCGGCGGCAACA
GTAGCGGCAACGCCAGCGGCAATGCCGGCAGCGGCGGCGCCAGTGGCGCC
GCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig151:6868..8670+

>mRNA_P-wetherbeei_contig151.6.1 ID=mRNA_P-wetherbeei_contig151.6.1|Name=mRNA_P-wetherbeei_contig151.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1368bp|location=Sequence derived from alignment at P-wetherbeei_contig151:6868..8670+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTTCGCAGGAAGCTCTCGTTGCGCGCCATCGGCGAGAAACAGCCAAA
GCCGGCAGCAGCAATAGTAACCGGAGCTGCGGTCAACGAGCCAGCCGTGG
CGTCTGCCCCAGCCGCGACGGCTCAAGCGACGGCAGGAGCCGGCCGCAGC
CAGCGCTTCCGGATGCGCCGACGCAGCGAAGGCGACAGTGGTAACAAGGC
CAGCGCGGTCGTATTCACGCCTGTGATGCTCGACAGCATCATTCGCAGTG
CTCTAGACCCCAAACCTCGTGGCGCCGAGGCAGGCAAGAGCCGCGCCCCC
AGCACGACACCGGCGACCCCGGAGCTCGGTTCGCCCGCGAGGGGCAGCGC
GCGCAGCGGCGCGCGAGCTGGCGATCCGAGCCGCGGCAATAGGACGCGCT
CCATGAGCTCGCTCTTCGGGAGACCAACCTCCGTGCACCAACCACAGCAG
CATCAACCGCAGACGGCGATGGCGGCGGCGGCGGCGGCGGGAGGCTCCCC
GCCCCTTGCGACGCCGGCGGCGACGGCAGCCGCAGAGGCAAAAATAGAGA
CGACGGCGGTTCCCGGCTCTGCGGCAATTAGAACCGGCAACGGCGCTTTC
GCGATGGATGACGACTTTGGTGCGATGACGGACAACGCCGCCGGGGTCGC
CGTTGTCGCCGCCGCTGCTGCCGCCGTCTCCTGCACTGCTCTTTCGACCT
CCTCTGGAACCGCTCCCGGTAATACGTCGGCTGTTCTGGCTACCCTCACT
GGCGGCAGCAGCTCAACGGCCGACGTGGCGGGACCGGCGGCGGGAGGAAC
GGCGGGCGCGGCGGTGGGCGGCGCGACCGCGGGCAAGGTGATGCTAGTGG
GCCACGGGGTGTCGATAGACGGCCTCGAGGTGGAGGACGCAGAGATCTTT
GTGGTGGACGGACGAGTTCTCAACGGACGCGTTCAGGCCAACGAGGTGCG
CGTCACCGGAACCTTCCAGGGCAGCCTTGAGTGCCGCCACATCCAGGTGA
CCAAGGGTGCGACCGTGATTGGGCGGGTGGTGGCGGACACCGCGGACGTC
GCCGGACGTGTGGAGGGCGCCCTCGTCGTCCGCGTCAAGCTCAGCCTCCA
CGTAGCCGGCCGCGCGCGCAGCTTCGTCCGCTACGGCGACGTCGTCGCCG
CACCGGGCAGCCGCCTCATTGGCGACGTCGGCGTCTACGGTGGCTCGAGC
GACGAGAGCCCGCTGCGGCAGCTCAACTGCGCTCGGCGGGCTGCCGAGGA
GCTGTTGGCGCGCCGCTCCGTGGCGGCGGCGCGTTCCCCGGTCAAGTATG
TGCGCGGCGGCAACAGTAGCGGCAACGCCAGCGGCAATGCCGGCAGCGGC
GGCGCCAGTGGCGCCGCT
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