mRNA_P-wetherbeei_contig15098.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15098.2.1
Unique NamemRNA_P-wetherbeei_contig15098.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15098.2.1 vs. uniprot
Match: A0A2E9ZMD0_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E9ZMD0_9GAMM)

HSP 1 Score: 60.5 bits (145), Expect = 4.320e-8
Identity = 56/180 (31.11%), Postives = 88/180 (48.89%), Query Frame = 1
Query:    1 LALVAAFVVPILIAWWFAIMHPEAVPQGQLNHGELLHPPIDLKP----AAAGAALDALKLAPAEWGLMYYAAGPCAADCARVVELLLTVRSLIGAHGARVHVAALVDAAPSPAIAQALTIVDADARALLAREAAARTGTHR-EHGIVLLDSQRLAMMIYAVDASPVGIKEDLKRLLRGSA 525
            LAL+A FV+P+L+AW  A    +  PQ  LN+G LL PP+ L       A G AL    +A  +W ++      C   C +++E    ++  +G    RV +A L   A +PA       + ADA   L +     +G  + +   +++D Q   +++Y       G+ EDLKRLLR +A
Sbjct:   17 LALMAVFVLPLLLAWGLARGPFDWRPQSNLNYGVLLQPPLQLNAFGVMPATGTALTMNAIA-RDWFVVVLYNEVCTLGCQQLMEAAERIQIAVGRDAGRVSLALLGSEAITPAPPGNNLWLAADAA--LGQALRQASGEPQFDAKFLIVDYQGYVVLMYPPSEEGPGVLEDLKRLLRTAA 193          
BLAST of mRNA_P-wetherbeei_contig15098.2.1 vs. uniprot
Match: A0A1C9W5J7_9GAMM (Uncharacterized protein n=1 Tax=Microbulbifer aggregans TaxID=1769779 RepID=A0A1C9W5J7_9GAMM)

HSP 1 Score: 54.7 bits (130), Expect = 7.130e-6
Identity = 53/190 (27.89%), Postives = 88/190 (46.32%), Query Frame = 1
Query:    1 LALVAAFVVPILIAWWFAIMHPE-AVPQGQLNHGELLHPPIDLKPAAAGAALD-------ALKLAPAEWGLMYYAAGPCAADCARVVELLLTVRSLIGAHGARVHVAALVDAAPSPAIAQALTIVDADARALLAREAAARTGTHREHGIV--------LLDSQRLAMMIYAVDASPVGIKEDLKRLLRGS 522
            L+L+AA  +PI+ A  + + H    +P G +N GELL PP+D++  A  +A +       + + AP +W  +    G C + C  ++     V   +     RV    LV   P PA  +A    +      +  +A+A     RE G+V        L+D +  AMM Y  + +   + +D+KRLL+ S
Sbjct:   26 LSLIAAVALPIVAA--YVVYHTGLGMPDGTINQGELLQPPVDIEGLALRSASEESASQAVSFESAPHKWRYLILPDGACESACDNLLYTSRQVHIRLAEKADRVE-RLLVTPEPLPAERRAAIAAEHPRLRFVTADASALQTLRRESGLVMAEGPQAVLVDQKGFAMMRYGNEHTGNQLLKDIKRLLKYS 212          
BLAST of mRNA_P-wetherbeei_contig15098.2.1 vs. uniprot
Match: A0A7C7YYX1_9GAMM (Uncharacterized protein n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A7C7YYX1_9GAMM)

HSP 1 Score: 53.5 bits (127), Expect = 1.550e-5
Identity = 52/187 (27.81%), Postives = 82/187 (43.85%), Query Frame = 1
Query:    1 LALVAAFVVPILIAWWFAIMHPEAVPQGQLNHGELLHPP---IDLKPAAAGAALDALKLAPAEWGLMYYAAGPCAADCARVVELLLTVRSLIGAHGARVH-VAALVDAAPSPA------IAQALTIVDADARALLAREAAARTGTHREHG-IVLLDSQRLAMMIYAVDASPVGIKEDLKRLLRGSAI 528
            +ALVA F+ P+L+A+++        P G +N G+L+ PP    DL          AL     +W  +Y++   C   C  V+E L+ +R   G H  R+  + A+V  +  P+       A     ++  A     +          E G I LLD     MM Y +   P  I++DL RL+R S +
Sbjct:   18 IALVAVFIAPVLVAFFWQ-------PTGYVNRGQLIEPPRLVSDLAMHMINGRATALSSLKGKWTYVYFSHEVCDQTCNAVIESLVRIRLSRGKHKHRIQFLVAIVSPSAPPSDERVSHSAVRTAYIEKSALGRWRKAFGVEDSAPPEAGRIYLLDPLGYLMMSYPLAIDPNDIRKDLARLMRVSRV 197          
BLAST of mRNA_P-wetherbeei_contig15098.2.1 vs. uniprot
Match: A0A523LL39_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A523LL39_9GAMM)

HSP 1 Score: 53.1 bits (126), Expect = 2.290e-5
Identity = 55/194 (28.35%), Postives = 86/194 (44.33%), Query Frame = 1
Query:    1 LALVAAFVVPILIAWWFAIMHPEAVPQGQLNHGELLHPPIDLKPAAA------GAALDALKLAPAE--WGLMYYAAGPCAADCARVVELLLTVRSLIGAHGARVHVAALVDAAPSPAIA-----QALTIV---DADARALLAREAAART---GTHREHGIVLLDSQRLAMMIYAVDASPVGIKEDLKRLLRGSA 525
            L++ AAF++P+L+AWW         P+   N G L+ PP+ ++ A        G   + L   P +  W L+Y  A  C   C   +  +      +G    RV    LV+ A SPA +       LT++    A +  L A  A AR    G +    + LLD +   ++ Y   A+   I  D++RLL+ SA
Sbjct:    8 LSVTAAFLLPVLLAWWLNFGPWPWRPEAAGNRGTLIQPPVLVESAGVRSLVHPGLGYEGLASEPFQGHWSLVYAGASDCPNACEAALVNMRQSWLALGKDARRVRRWFLVNDAKSPASSLLEEHPGLTVIALTSASSGTLGAALAVARETAGGANAGEWVWLLDPRGFVILSYGSSATATDILRDMQRLLKYSA 201          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15098.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2E9ZMD0_9GAMM4.320e-831.11Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A1C9W5J7_9GAMM7.130e-627.89Uncharacterized protein n=1 Tax=Microbulbifer aggr... [more]
A0A7C7YYX1_9GAMM1.550e-527.81Uncharacterized protein n=2 Tax=Gammaproteobacteri... [more]
A0A523LL39_9GAMM2.290e-528.35Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15098contigP-wetherbeei_contig15098:410..943 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1469245.JFBG01000016_gene961
Model size534
Max annot lvl135613|Chromatiales
Hectar predicted targeting categorysignal peptide
Exons1
Evalue9.82e-09
EggNOG OGsCOG1999@1|root,COG1999@2|Bacteria,1N6R6@1224|Proteobacteria,1SWXH@1236|Gammaproteobacteria,1X1CE@135613|Chromatiales
Descriptionsignal sequence binding
Cds size534
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186044.4103215-CDS-P-wetherbeei_contig15098:409..9431683186044.4103215-CDS-P-wetherbeei_contig15098:409..943Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15098 410..943 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15098.2.1prot_P-wetherbeei_contig15098.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15098 410..943 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15098.2.1

>prot_P-wetherbeei_contig15098.2.1 ID=prot_P-wetherbeei_contig15098.2.1|Name=mRNA_P-wetherbeei_contig15098.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=178bp
LALVAAFVVPILIAWWFAIMHPEAVPQGQLNHGELLHPPIDLKPAAAGAA
LDALKLAPAEWGLMYYAAGPCAADCARVVELLLTVRSLIGAHGARVHVAA
LVDAAPSPAIAQALTIVDADARALLAREAAARTGTHREHGIVLLDSQRLA
MMIYAVDASPVGIKEDLKRLLRGSAIN*
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mRNA from alignment at P-wetherbeei_contig15098:410..943-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15098.2.1 ID=mRNA_P-wetherbeei_contig15098.2.1|Name=mRNA_P-wetherbeei_contig15098.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=534bp|location=Sequence derived from alignment at P-wetherbeei_contig15098:410..943- (Phaeothamnion wetherbeei SAG_119_79)
CTCGCGCTGGTGGCCGCGTTCGTCGTGCCGATACTGATCGCGTGGTGGTT CGCCATCATGCACCCGGAGGCCGTACCGCAAGGCCAGCTCAATCACGGCG AACTGCTGCATCCTCCCATTGACCTCAAGCCCGCCGCTGCCGGTGCGGCT CTCGACGCACTCAAACTCGCACCGGCTGAATGGGGCCTCATGTATTACGC TGCCGGGCCCTGTGCCGCAGACTGCGCGCGCGTGGTCGAACTCTTGCTCA CCGTCCGCAGCCTGATCGGCGCCCACGGCGCGCGCGTCCATGTCGCCGCT CTGGTCGATGCGGCGCCCTCACCAGCTATCGCACAGGCGCTCACGATAGT GGATGCCGACGCCCGCGCGCTGTTGGCCCGCGAAGCGGCGGCCCGCACCG GCACACACAGGGAACACGGCATCGTGTTGCTCGATTCGCAGCGTCTGGCG ATGATGATATATGCCGTCGACGCCTCACCAGTCGGCATCAAGGAAGACTT GAAGCGCCTGCTGCGCGGCTCGGCCATCAACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15098:410..943-

>mRNA_P-wetherbeei_contig15098.2.1 ID=mRNA_P-wetherbeei_contig15098.2.1|Name=mRNA_P-wetherbeei_contig15098.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=534bp|location=Sequence derived from alignment at P-wetherbeei_contig15098:410..943- (Phaeothamnion wetherbeei SAG_119_79)
CTCGCGCTGGTGGCCGCGTTCGTCGTGCCGATACTGATCGCGTGGTGGTT
CGCCATCATGCACCCGGAGGCCGTACCGCAAGGCCAGCTCAATCACGGCG
AACTGCTGCATCCTCCCATTGACCTCAAGCCCGCCGCTGCCGGTGCGGCT
CTCGACGCACTCAAACTCGCACCGGCTGAATGGGGCCTCATGTATTACGC
TGCCGGGCCCTGTGCCGCAGACTGCGCGCGCGTGGTCGAACTCTTGCTCA
CCGTCCGCAGCCTGATCGGCGCCCACGGCGCGCGCGTCCATGTCGCCGCT
CTGGTCGATGCGGCGCCCTCACCAGCTATCGCACAGGCGCTCACGATAGT
GGATGCCGACGCCCGCGCGCTGTTGGCCCGCGAAGCGGCGGCCCGCACCG
GCACACACAGGGAACACGGCATCGTGTTGCTCGATTCGCAGCGTCTGGCG
ATGATGATATATGCCGTCGACGCCTCACCAGTCGGCATCAAGGAAGACTT
GAAGCGCCTGCTGCGCGGCTCGGCCATCAACTGA
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