mRNA_P-wetherbeei_contig10405.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10405.1.1
Unique NamemRNA_P-wetherbeei_contig10405.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10405.1.1 vs. uniprot
Match: A0A6H5JC22_9PHAE (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC22_9PHAE)

HSP 1 Score: 314 bits (805), Expect = 9.000e-96
Identity = 163/341 (47.80%), Postives = 211/341 (61.88%), Query Frame = 1
Query:    1 KRADFFDGHSWASGLFDQANGKSQESVSEALNAYYAVYLLGVATGNAERRDWGRALLAMEMRGARTYWHMPAGTPIYDTVYASNRMTGVVAALETVHLTWFGDKYEWVHGINIMPVTPLTEDLLPYEYMEEEWVVLQTVFQRPDDPPSPQWRGIVYCAQAVVQPDAAWDNLDGLNIYDSGNSRSNALYWIATRPQRAANATAYNSSAFAFDVEVEAQCAANSPCFAQGLVED--CCPTAAGDWLGCCPSYNKA--GDAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGG------AQQHAGHDPDTPKA-CKNNPGCEALLGDCCPAPGNVYLGCCGA 990
            ++ D +DGHSW SG+F Q NGKSQESVSE++NAYY VYL G+ATG+   +DWGR LLAME+R AR YW MP    +YD+ ++S+RM G+VA+LE V LTWFGD  E+VH +N+MP TP+TEDLL  ++ME+EW VL+  F   +  P PQW G +Y A +VV P  AW NL  L+I+D+GNS++N+LYWIATRP    +  AYN S F  +V+VEA+C+ANS C A+ L ++  CCPT    WLGCCPS +    G +A                               GG       ++H       P+A C  N GC  L G CCP    VYLGCCG+
Sbjct:  596 RQKDLYDGHSWTSGIFPQGNGKSQESVSESINAYYGVYLFGLATGDDATKDWGRVLLAMEVRAARKYWQMPRHNGVYDSYFSSHRMVGMVASLEAVQLTWFGDNVEYVHCVNMMPFTPITEDLLHRDFMEQEWPVLEAAFDGRE--PDPQWAGFIYLAASVVLPVEAWANLTALDIFDNGNSKTNSLYWIATRP----SGEAYNESMFPVEVKVEAECSANSACQARSLTQEKLCCPTKDDGWLGCCPSGDGVPEGPSACSSNPNCVAAGLATGLCCPGLSGEMLACCGQGGDDSEDDKKEHKAAVAVDPQALCSANQGCAMLEGACCPTQQGVYLGCCGS 930          
BLAST of mRNA_P-wetherbeei_contig10405.1.1 vs. uniprot
Match: A0A835YW37_9STRA (Endo-1,3(4)-beta-glucanase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW37_9STRA)

HSP 1 Score: 261 bits (668), Expect = 4.030e-82
Identity = 123/226 (54.42%), Postives = 155/226 (68.58%), Query Frame = 1
Query:    1 KRADFFDGHSWASGLFDQANGKSQESVSEALNAYYAVYLLGVATGNAERRDWGRALLAMEMRGARTYWHMPAGTPIYDTVYASNRMTGVVAALETVHLTWFGDKYEWVHGINIMPVTPLTEDLLPYEYMEEEWVVLQTVFQRPDDPPSPQWRGIVYCAQAVVQPDAAWDNLDGLNIYDSGNSRSNALYWIATRPQRAA--NATAYNSSAFAFDVEVEAQCAANSPC 672
            +  DFFDGHSWASGLF Q NGKSQES SEA+NAYYAVYLLG+ATGN E RDWGR LLA E+R    YWHM   + +YD+++ASNRM GVV  L+ V +TWFGD  E+VHGIN+MP TP++ +LLPY YM EEW +L T   R D P   QW G ++ A A++ P+AAW  +  L ++D+ NS++N+L+W+A+RP      N T Y     A  V V   C  NS C
Sbjct:  121 RHKDFFDGHSWASGLFSQGNGKSQESSSEAVNAYYAVYLLGMATGNRELRDWGRILLAGELRSTDKYWHMRNDSDVYDSIFASNRMVGVVGGLDAVDVTWFGDNVEYVHGINMMPFTPISAELLPYGYMREEWPMLATALTREDPPLVAQWEGYIHLAHAILDPEAAWSGISDLTVFDAANSKTNSLHWVASRPAPPPGYNETLYAEMNAAAAVTVPVSCLENSAC 346          
BLAST of mRNA_P-wetherbeei_contig10405.1.1 vs. uniprot
Match: A0A835ZFG2_9STRA (Endo-1,3(4)-beta-glucanase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFG2_9STRA)

HSP 1 Score: 251 bits (641), Expect = 7.120e-76
Identity = 130/261 (49.81%), Postives = 167/261 (63.98%), Query Frame = 1
Query:    1 KRADFFDGHSWASGLFDQANGKSQESVSEALNAYYAVYLLGVATGNAERRDWGRALLAMEMRGARTYWHMPAGTPIYDTVYASNRMTGVVAALETVHLTWFGDKYEWVHGINIMPVTPLTEDLLPYEYMEEEWVVLQTVFQRP-------------DDPPSPQWRGIVYCAQAVVQPDAAWDNLDGLNIYDSGNSRSNALYWIATRPQRA---ANATAYNSSAFAFDVEVEAQCAANSPCFAQGLVEDCCPTAAGDWLGCC 735
            +  D +D HSWASGLF Q+NGKSQES+SEA+NAYYAV+L GVAT N   RDWGR L  ME+R   TYW MP+GTPIYD+ +ASN+M GVV AL+ +  TWFGDK+E++H IN+MP TP+TE LL   ++ EE+ VL                     D  + +W G VY  QA+V P+ +W +L  L I+DSGNS +N LYW ATRP+     A A A +S+         A+C+AN+ C A  LV +CCPT+ G  L CC
Sbjct:  277 RHKDMYDFHSWASGLFPQSNGKSQESISEAINAYYAVHLYGVATKNDALRDWGRVLAQMELRAGHTYWQMPSGTPIYDSNFASNKMAGVVGALDVICNTWFGDKFEYIHAINMMPFTPITEALLRPPFVAEEYPVLARALAHAINFHLTLARALAHGDGVAQEWLGFVYMDQAIVDPNQSWADLLSLRIFDSGNSLTNGLYWSATRPKHDIAFAKAPAASSNG--------AKCSANAACAAHALVGECCPTSQGVMLNCC 529          
BLAST of mRNA_P-wetherbeei_contig10405.1.1 vs. uniprot
Match: D8LU99_ECTSI (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU99_ECTSI)

HSP 1 Score: 257 bits (656), Expect = 9.830e-76
Identity = 117/194 (60.31%), Postives = 149/194 (76.80%), Query Frame = 1
Query:    1 KRADFFDGHSWASGLFDQANGKSQESVSEALNAYYAVYLLGVATGNAERRDWGRALLAMEMRGARTYWHMPAGTPIYDTVYASNRMTGVVAALETVHLTWFGDKYEWVHGINIMPVTPLTEDLLPYEYMEEEWVVLQTVFQRPDDPPSPQWRGIVYCAQAVVQPDAAWDNLDGLNIYDSGNSRSNALYWIATRP 582
            ++ DF+DGHSW SG+F Q NGKSQESVSE++NAYY VYLLG+ATG+   +DWGR LLAME+R AR YW MP    +YD+ ++S+RM G+VA+LE V LTWFGD  E+VH IN+MP TP+TEDLL  ++ME+EW VL+  F   +  P PQW G +Y A +VV P  AW NL  L+I+DSGNS++N+LYWIATRP
Sbjct:  596 RQKDFYDGHSWTSGMFPQGNGKSQESVSESINAYYGVYLLGLATGDDAMKDWGRVLLAMEVRAARKYWQMPRHNGVYDSYFSSHRMVGMVASLEAVQLTWFGDNVEYVHCINMMPFTPITEDLLHRDFMEQEWPVLEAAFDGRE--PDPQWAGFIYLAASVVLPVEAWANLTALDIFDSGNSKTNSLYWIATRP 787          
BLAST of mRNA_P-wetherbeei_contig10405.1.1 vs. uniprot
Match: W7TQI2_9STRA (Endo-1,3(4)-beta-glucanase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQI2_9STRA)

HSP 1 Score: 231 bits (589), Expect = 7.170e-66
Identity = 105/194 (54.12%), Postives = 137/194 (70.62%), Query Frame = 1
Query:    1 KRADFFDGHSWASGLFDQANGKSQESVSEALNAYYAVYLLGVATGNAERRDWGRALLAMEMRGARTYWHMPAGTPIYDTVYASNRMTGVVAALETVHLTWFGDKYEWVHGINIMPVTPLTEDLLPYEYMEEEWVVLQTVFQRPDDPPSPQWRGIVYCAQAVVQPDAAWDNLDGLNIYDSGNSRSNALYWIATRP 582
            +  DFFDGHSWASGLF+Q NGKSQES SEA+NAYY  +L G ATG+ +  ++ + LLAME+R  R YWHM   T IYD ++A+NRM GVV  L+    TWFG   E+VHGIN+MP TP+TE +L   ++ EE+ VL +V  R DDP   +W+G +Y   AV+ P AAW  ++ L  YD+GNS+SN L+W+ATRP
Sbjct:  627 RHKDFFDGHSWASGLFEQNNGKSQESSSEAINAYYGAHLYGRATGDVKLENFAKLLLAMEIRSTRWYWHMQNNTKIYDPIFAANRMAGVVGGLDATCHTWFGASLEYVHGINMMPFTPVTEAVLDASFVREEYPVLASVLSRSDDPVEEEWKGFIYMDHAVIDPAAAWTEVESLKRYDTGNSKSNTLWWVATRP 820          
BLAST of mRNA_P-wetherbeei_contig10405.1.1 vs. uniprot
Match: A0A836CER9_9STRA (Endo-1,3(4)-beta-glucanase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CER9_9STRA)

HSP 1 Score: 231 bits (588), Expect = 7.480e-65
Identity = 117/249 (46.99%), Postives = 147/249 (59.04%), Query Frame = 1
Query:   31 WASGLFDQANGKSQESVSEALNAYYAVYLLGVATGNAERRDWGRALLAMEM---------------------------------RGARTYWHMPAGTPIYDTVYASNRMTGVVAALETVHLTWFGDKYEWVHGINIMPVTPLTEDLLPYEYMEEEWVVLQTVFQRPDDPPSPQWRGIVYCAQAVVQPDAAWDNLDGLNIYDSGNSRSNALYWIATRPQRAA--NATAYNSSAFAFDVEVEAQCAANSPC 672
            WASGLF Q NGKSQES SEA+NAYYAVYLLG+ATGN E RDWGR LLA EM                                 R    YWHM   + +YD+++ASNRM GVV  L+ V +TWFGD  E+VHGIN+MP TP++ +LLPY YM EEW +L T   R D P   QW G ++ A A++ P+AAW  +  L ++D+ NS++N+L+W+A+RP      N T Y     A  V V   C  NS C
Sbjct:  808 WASGLFSQGNGKSQESSSEAVNAYYAVYLLGMATGNRELRDWGRILLAGEMAAVKPAARLYKHFASXXXXXXXXXXXXXXXXXLRSTDKYWHMRNDSDVYDSIFASNRMVGVVGGLDAVDVTWFGDNVEYVHGINMMPFTPISAELLPYGYMREEWPMLATALTREDPPLVAQWEGYIHLAHAILDPEAAWSGISDLTVFDAANSKTNSLHWVASRPAPPPGYNETLYAEMNAAAAVTVPVSCLENSAC 1056          
BLAST of mRNA_P-wetherbeei_contig10405.1.1 vs. uniprot
Match: A0A3R8CRI4_9STRA (Glyco_hydro81C domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3R8CRI4_9STRA)

HSP 1 Score: 196 bits (497), Expect = 2.810e-58
Identity = 92/191 (48.17%), Postives = 130/191 (68.06%), Query Frame = 1
Query:   13 FFDGHSWASGLFDQANGKSQESVSEALNAYYAVYLLGVATGNAERRDWGRALLAMEMRGARTYWHMPAGTPIYDTVYASNRMTGVVAALETVHLTWFGDKYEWVHGINIMPVTPLTEDLLPYEYMEEEWVVLQT-VFQRPDDPPSPQWRGIVYCAQAVVQPDAAWDNLDGLNIYDSGNSRSNALYWIATRP 582
            +FD HS+ASG++    GKSQESVSEA+NAYY VYL+G +    E    G  LLA+E+RGA+TYW MP+ + IY+ +YA+N+MTG VAA +  + TWFG + E +H IN++P TP+T   L   Y++EE+ +LQ   F R  DP   +W+G  Y   A++ P  AW  +  ++ +D G+SR+N+LYWIATRP
Sbjct:   15 WFDSHSFASGIYTLDGGKSQESVSEAINAYYGVYLVGKSFQVPEVEHIGHLLLALEIRGAQTYWQMPSTSDIYEPIYAANKMTGQVAATKVSYTTWFGPQVEHMHLINMIPFTPITGKFLKPAYVQEEYPILQQQAFDRAQDPVDDRWKGYAYLDLAIINPTDAWTKVQSIDFFDDGSSRTNSLYWIATRP 205          
BLAST of mRNA_P-wetherbeei_contig10405.1.1 vs. uniprot
Match: A0A5D6XK97_9STRA (Endo-1,3(4)-beta-glucanase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XK97_9STRA)

HSP 1 Score: 203 bits (517), Expect = 1.360e-55
Identity = 100/191 (52.36%), Postives = 132/191 (69.11%), Query Frame = 1
Query:   13 FFDGHSWASGLFDQANGKSQESVSEALNAYYAVYLLGVATGNAERRDWGRALLAMEMRGARTYWHMPAGTPIYDTVYASNRMTGVVAALETVHLTWFGDKYEWVHGINIMPVTPLTEDLLPYEYMEEEWVVLQT-VFQRPDDPPSPQWRGIVYCAQAVVQPDAAWDNLDGLNIYDSGNSRSNALYWIATRP 582
            +FDGHS+ASG++    GKSQESVSEA+NAYY VYLLG A    E    G  LLA+E+R A+TYW MPAG+ IY+ V+A N+MTG VAA +  + TWFG + E +H IN++P TP+TE  +   Y+ EE+ VLQT  F+R   P   +WRG  Y   A+V P  AW  ++GL+ +D G+S +N+LYWIATRP
Sbjct:  643 WFDGHSFASGVYTLEGGKSQESVSEAINAYYGVYLLGKALQIPEVEHTGHILLALEIRAAKTYWQMPAGSSIYEDVFAQNKMTGQVAATKVSYTTWFGPEIEHMHLINMIPFTPITEAFIAPAYVREEYPVLQTQAFERSPAPIDARWRGYAYLDLAIVDPAQAWTLVNGLDFFDDGSSLTNSLYWIATRP 833          
BLAST of mRNA_P-wetherbeei_contig10405.1.1 vs. uniprot
Match: A0A8J6CFR8_DIALT (Endo-1,3(4)-beta-glucanase n=3 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CFR8_DIALT)

HSP 1 Score: 202 bits (514), Expect = 5.370e-55
Identity = 101/192 (52.60%), Postives = 128/192 (66.67%), Query Frame = 1
Query:   10 DFFDGHSWASGLFDQANGKSQESVSEALNAYYAVYLLGVATGNAERRDWGRALLAMEMRGARTYWHMPAGTPIYDTVYAS-NRMTGVVAALETVHLTWFGDKYEWVHGINIMPVTPLTEDLLPYEYMEEEWVVLQTVFQRPDDPPSPQWRGIVYCAQAVVQPDAAWDNLDGLNIYDSGNSRSNALYWIATRP 582
            D +DGHSWASGLF  A+GKSQES SEA+NAYY   L+G A G+   R W + LLAME+R A+ YWH+P+ +PIYD  +A+ NRM GVV A +    TWFG   E+VHGINIMPVTP+TE LLP  Y+ E++  L T   R +      W G    A A+V P  A   +  LN +D+GNSR+N L+W+ATRP
Sbjct:  705 DLYDGHSWASGLFQMADGKSQESSSEAVNAYYGAALVGEALGDEALRSWAQLLLAMEIRSAQWYWHVPSASPIYDPSFAATNRMVGVVGATDANAATWFGANLEYVHGINIMPVTPVTEALLPASYVAEQYAQLATRHGRMEA----AWAGFAVAAHAIVDPAKALLEVAELNAFDNGNSRTNMLHWVATRP 892          
BLAST of mRNA_P-wetherbeei_contig10405.1.1 vs. uniprot
Match: H3H0L4_PHYRM (Endo-1,3(4)-beta-glucanase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H0L4_PHYRM)

HSP 1 Score: 196 bits (497), Expect = 3.960e-54
Identity = 91/191 (47.64%), Postives = 130/191 (68.06%), Query Frame = 1
Query:   13 FFDGHSWASGLFDQANGKSQESVSEALNAYYAVYLLGVATGNAERRDWGRALLAMEMRGARTYWHMPAGTPIYDTVYASNRMTGVVAALETVHLTWFGDKYEWVHGINIMPVTPLTEDLLPYEYMEEEWVVLQT-VFQRPDDPPSPQWRGIVYCAQAVVQPDAAWDNLDGLNIYDSGNSRSNALYWIATRP 582
            +FD HS+ASG++    GKSQESVSEA+NAYY VYL+G +    E    G  LLA+E+RGA+TYW MP+ + IY+ +YA+N+MTG +AA +  + TWFG + E +H IN++P TP+T   L   Y++EE+ +LQ   F R  DP   +W+G  Y   A++ P  AW  +  ++ +D G+SR+N+LYWIATRP
Sbjct:  403 WFDSHSFASGVYTLDGGKSQESVSEAINAYYGVYLVGKSFKVPEVEHMGHLLLALEIRGAQTYWQMPSNSDIYEPIYAANKMTGQIAATKVSYTTWFGPQVEHMHLINMIPFTPITNAFLSPAYVQEEYPILQQQAFDRAQDPIDDRWKGYAYLDLAIIDPVDAWTKVQNMSFFDDGSSRTNSLYWIATRP 593          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10405.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JC22_9PHAE9.000e-9647.80Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sp. ... [more]
A0A835YW37_9STRA4.030e-8254.42Endo-1,3(4)-beta-glucanase n=1 Tax=Tribonema minus... [more]
A0A835ZFG2_9STRA7.120e-7649.81Endo-1,3(4)-beta-glucanase n=1 Tax=Tribonema minus... [more]
D8LU99_ECTSI9.830e-7660.31Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sili... [more]
W7TQI2_9STRA7.170e-6654.12Endo-1,3(4)-beta-glucanase n=2 Tax=Monodopsidaceae... [more]
A0A836CER9_9STRA7.480e-6546.99Endo-1,3(4)-beta-glucanase n=2 Tax=Tribonema minus... [more]
A0A3R8CRI4_9STRA2.810e-5848.17Glyco_hydro81C domain-containing protein n=2 Tax=P... [more]
A0A5D6XK97_9STRA1.360e-5552.36Endo-1,3(4)-beta-glucanase n=1 Tax=Pythium brassic... [more]
A0A8J6CFR8_DIALT5.370e-5552.60Endo-1,3(4)-beta-glucanase n=3 Tax=Diacronema luth... [more]
H3H0L4_PHYRM3.960e-5447.64Endo-1,3(4)-beta-glucanase n=1 Tax=Phytophthora ra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10405contigP-wetherbeei_contig10405:151..2166 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LU99
PFAMsAA_permease_2,Glyco_hydro_81
Model size990
Max annot lvl2759|Eukaryota
KEGG koko:K01180
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.61e-76
EggNOG OGsCOG5498@1|root,KOG2254@2759|Eukaryota
EC3.2.1.6
Descriptionglucan endo-1,4-beta-glucanase activity, C-3 substituted reducing group
Cds size990
COG categoryM
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185868.079357-CDS-P-wetherbeei_contig10405:150..4131683185868.079357-CDS-P-wetherbeei_contig10405:150..413Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10405 151..413 -
1683185868.0879703-CDS-P-wetherbeei_contig10405:690..10991683185868.0879703-CDS-P-wetherbeei_contig10405:690..1099Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10405 691..1099 -
1683185868.0951242-CDS-P-wetherbeei_contig10405:1469..15931683185868.0951242-CDS-P-wetherbeei_contig10405:1469..1593Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10405 1470..1593 -
1683185868.1024644-CDS-P-wetherbeei_contig10405:1972..21661683185868.1024644-CDS-P-wetherbeei_contig10405:1972..2166Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10405 1973..2166 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10405.1.1prot_P-wetherbeei_contig10405.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10405 151..2166 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10405.1.1

>prot_P-wetherbeei_contig10405.1.1 ID=prot_P-wetherbeei_contig10405.1.1|Name=mRNA_P-wetherbeei_contig10405.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=330bp
KRADFFDGHSWASGLFDQANGKSQESVSEALNAYYAVYLLGVATGNAERR
DWGRALLAMEMRGARTYWHMPAGTPIYDTVYASNRMTGVVAALETVHLTW
FGDKYEWVHGINIMPVTPLTEDLLPYEYMEEEWVVLQTVFQRPDDPPSPQ
WRGIVYCAQAVVQPDAAWDNLDGLNIYDSGNSRSNALYWIATRPQRAANA
TAYNSSAFAFDVEVEAQCAANSPCFAQGLVEDCCPTAAGDWLGCCPSYNK
AGDAAAACSANEGCAALGLTEGLCCPSNAGYLGCCAGGAQQHAGHDPDTP
KACKNNPGCEALLGDCCPAPGNVYLGCCGA
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mRNA from alignment at P-wetherbeei_contig10405:151..2166-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10405.1.1 ID=mRNA_P-wetherbeei_contig10405.1.1|Name=mRNA_P-wetherbeei_contig10405.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2016bp|location=Sequence derived from alignment at P-wetherbeei_contig10405:151..2166- (Phaeothamnion wetherbeei SAG_119_79)
AAACGCGCAGATTTCTTCGATGGGCACAGCTGGGCGAGCGGCCTCTTTGA CCAGGCCAATGGCAAGAGCCAGGAGAGCGTATCGGAGGCCCTGAACGCTT ACTACGCCGTCTACCTGCTCGGCGTCGCCACGGGCAACGCCGAGCGGCGG GACTGGGGGCGGGCGCTGCTGGCGATGGAGATGCGCGGCGCCAGGTGGGC GGAAGAGGAAGGGGGGAGGGTCCGATGCTGGCTTTCCATTCATCCTGCAT TTCTGGCAATCGCGGGAGTGGCCCGTTATGTGCAGCACCGTTAATTCTTA GTGTTGCTTCCTGGTCGCAGAGAACGGGAAAGGTGGCGCCGCCTAGCTGC TTTTGGCTGCTGTCGTGCAGTTCTCGCATTTTGGCTTGTTCCTCGACCGG CAATTGGTTCTTCCGTTTTTTTCCGCAGCTTCTTTCCAGCGGCTCAGCGC GGTCCAGCGCAGTATCCCTACCCTCTCATCAACTCTGCTGCTGCCGACAT GGAAGAGGATTTCCGTCGTCTCAACCGCGTTGTATCGGCGGTACATTGCC TCTGGTGACCAAAACCTGAACAGGACATACTGGCACATGCCGGCGGGTAC GCCCATCTACGACACCGTCTATGCCTCCAATCGCATGACCGGGGTGGTGG CGGCGCTGGAGACGGTGCACCTCACATGGTTCGGTGACAAATACGAGGTG AGTTGGGCATTGCATGGAAACAGTGCTTTTTTGCTCTTCTTGCTTAGACT GACCTCTTTTGGCCACTGAAATCAAGGTAACTGTTCCCAGAGAAGTCTTT GTTTGCAAGATGGTATGTCCTTTTTAGCGGTTGGTTGTGGTCGTGGGCGT GCAGCGGCAGTGTCAACTGAACTGTTGCCACAGGGCAGCGCTTGGGAGTT GGCATGCTGCAAGCCAATGCCAGCTTTTTTCGAAGTTCCTTAGATCATAG GATGACCATCCTCGCGCCCACATTTTTCGCCCTCCAACCTGGCGTTTGCC TGTGCCATTCCCTATTTCTTTCTTCTCTTACGGCTGCTTTTCGTTCCTTT CTTCCTCTTGAACATAGTGGGTCCACGGCATCAACATCATGCCGGTAACG CCCCTCACCGAGGACCTCTTGCCCTACGAGTACATGGAGGAGGAGTGGGT CGTCCTCCAGACCGTCTTTCAGCGGCCGGACGACCCGCCCAGCCCGCAGT GGCGCGGCATCGTCTACTGTGCGCAGGCCGTCGTGCAGCCGGATGCGGCC TGGGACAATCTGGACGGCCTGAACATTTACGACTCGGGCAACAGCCGCAG CAATGCACTGTACTGGATCGCGACGCGGCCGCAGCGCGCAGCAAACGCGA CGGCGTACAACAGCAGCGCGTTCGCCTTCGACGTTGAGGTCGAGGCGCAG TGCGCGGCCAACTCGCCGTGCTTCGCGCAGGGCCTCGTGGAGGACTGCTG TCCCACCGCTGCCGGCGACTGGCTCGGTGAGAAATGAGAGACAGATATTG TTCTCTTTCTCTTTTCCTGCTGCCTCGTGCGTTTTCAGAATGTCGTTTTG AGAAGTATCATTTGCAGTTTATTCGTCGTGACGTCTGACTTTCCATTTTT GTGTTCGTACCCTGGTAGAGGCGCCTAATTCCCGCTGTTGCAATCGTGGA GGTCTGTCTGCGTCAAGTCGTCTGACAGCCCCGCTGCCCGCCGCTATGCT CTACATAATATGCTTGGGAAACAAAACGAACGCTTGACCGCTGCCCGGGC CAGGGTGCTGCCCGAGCTACAACAAGGCGGGAGATGCTGCTGCAGCCTGC TCCGCCAACGAGGGCTGCGCCGCTCTCGGCCTCACCGAGGGCCTCTGCTG CCCGTCCAACGCCGGCTACCTCGGCTGCTGCGCTGGCGGCGCCCAGCAGC ACGCTGGCCACGACCCGGACACGCCTAAGGCGTGCAAAAACAATCCGGGA TGCGAAGCGCTCCTGGGGGACTGCTGCCCCGCGCCGGGGAACGTTTACCT GGGCTGCTGCGGCGCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10405:151..2166-

>mRNA_P-wetherbeei_contig10405.1.1 ID=mRNA_P-wetherbeei_contig10405.1.1|Name=mRNA_P-wetherbeei_contig10405.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=990bp|location=Sequence derived from alignment at P-wetherbeei_contig10405:151..2166- (Phaeothamnion wetherbeei SAG_119_79)
AAACGCGCAGATTTCTTCGATGGGCACAGCTGGGCGAGCGGCCTCTTTGA
CCAGGCCAATGGCAAGAGCCAGGAGAGCGTATCGGAGGCCCTGAACGCTT
ACTACGCCGTCTACCTGCTCGGCGTCGCCACGGGCAACGCCGAGCGGCGG
GACTGGGGGCGGGCGCTGCTGGCGATGGAGATGCGCGGCGCCAGGACATA
CTGGCACATGCCGGCGGGTACGCCCATCTACGACACCGTCTATGCCTCCA
ATCGCATGACCGGGGTGGTGGCGGCGCTGGAGACGGTGCACCTCACATGG
TTCGGTGACAAATACGAGTGGGTCCACGGCATCAACATCATGCCGGTAAC
GCCCCTCACCGAGGACCTCTTGCCCTACGAGTACATGGAGGAGGAGTGGG
TCGTCCTCCAGACCGTCTTTCAGCGGCCGGACGACCCGCCCAGCCCGCAG
TGGCGCGGCATCGTCTACTGTGCGCAGGCCGTCGTGCAGCCGGATGCGGC
CTGGGACAATCTGGACGGCCTGAACATTTACGACTCGGGCAACAGCCGCA
GCAATGCACTGTACTGGATCGCGACGCGGCCGCAGCGCGCAGCAAACGCG
ACGGCGTACAACAGCAGCGCGTTCGCCTTCGACGTTGAGGTCGAGGCGCA
GTGCGCGGCCAACTCGCCGTGCTTCGCGCAGGGCCTCGTGGAGGACTGCT
GTCCCACCGCTGCCGGCGACTGGCTCGGGTGCTGCCCGAGCTACAACAAG
GCGGGAGATGCTGCTGCAGCCTGCTCCGCCAACGAGGGCTGCGCCGCTCT
CGGCCTCACCGAGGGCCTCTGCTGCCCGTCCAACGCCGGCTACCTCGGCT
GCTGCGCTGGCGGCGCCCAGCAGCACGCTGGCCACGACCCGGACACGCCT
AAGGCGTGCAAAAACAATCCGGGATGCGAAGCGCTCCTGGGGGACTGCTG
CCCCGCGCCGGGGAACGTTTACCTGGGCTGCTGCGGCGCT
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