mRNA_P-wetherbeei_contig15082.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15082.3.1
Unique NamemRNA_P-wetherbeei_contig15082.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15082.3.1 vs. uniprot
Match: A0A351T6M1_9PROT (Flagellar hook protein FlgE n=3 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A351T6M1_9PROT)

HSP 1 Score: 254 bits (648), Expect = 2.070e-80
Identity = 132/167 (79.04%), Postives = 148/167 (88.62%), Query Frame = 1
Query:   13 MTIAWDTALTGLGTSTITLDIGTVGRPDGITQFATNSVLAAASINGAVFGNLLGLEVNNEGFVTATFENGIRQKIYKIPLAVFPNPNGLAARNGNSYGQSDTSGAFSLLEATRGTAGRIDPNVLEASTVELAEEFTNLITAQRAYSANSKIITTADEMLDELIRIKR 513
            + I WD A TGL TS I LD+GTVGRPDG+TQFATNS L++AS+NGAVFG+L GLEV+  G VTATFENGIR +IYKIPLAVFPNPNGL+AR+GN+YGQSD+SGAF+LL+AT   AGRID NVLEASTVELA EFT+LITAQRAYSANSKII TADEMLDELIRIKR
Sbjct:  278 LNITWDAASTGLSTSAIALDLGTVGRPDGLTQFATNSTLSSASVNGAVFGSLQGLEVDVSGNVTATFENGIRTQIYKIPLAVFPNPNGLSARSGNTYGQSDSSGAFTLLQATTAGAGRIDSNVLEASTVELAGEFTSLITAQRAYSANSKIIQTADEMLDELIRIKR 444          
BLAST of mRNA_P-wetherbeei_contig15082.3.1 vs. uniprot
Match: A0A3M1G8D1_9PROT (Flagellar hook protein FlgE n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M1G8D1_9PROT)

HSP 1 Score: 177 bits (448), Expect = 1.690e-50
Identity = 90/169 (53.25%), Postives = 124/169 (73.37%), Query Frame = 1
Query:    7 SPMTIAWDTALTGLGTSTITLDIGTVGRPDGITQFATNSVLAAASINGAVFGNLLGLEVNNEGFVTATFENGIRQKIYKIPLAVFPNPNGLAARNGNSYGQSDTSGAFSLLEATRGTAGRIDPNVLEASTVELAEEFTNLITAQRAYSANSKIITTADEMLDELIRIKR 513
            +P++  W   + G    +ITL++GT G  DGITQF + S L ++S++GAVFGN++G+ +  +G VTA F+NG+ + +YK+P+A F NP+GL    GN+YG SD SG FSL+EA  G  G I P+ LE+STV+LA EFT LIT QRA+SA+++IITTADEML EL +IKR
Sbjct:  281 APLSANW---VNGSAPGSITLNLGTDGEVDGITQFDSTSTLISSSVDGAVFGNVIGVSIGKDGIVTALFDNGLTRSVYKLPVATFQNPDGLTRVQGNAYGVSDQSGTFSLVEAGTGGGGSISPSSLESSTVDLAAEFTQLITTQRAFSASTRIITTADEMLTELNQIKR 446          
BLAST of mRNA_P-wetherbeei_contig15082.3.1 vs. uniprot
Match: A0A7Y8MDL9_9PROT (Flagellar hook protein FlgE n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7Y8MDL9_9PROT)

HSP 1 Score: 176 bits (447), Expect = 2.010e-50
Identity = 94/167 (56.29%), Postives = 121/167 (72.46%), Query Frame = 1
Query:   13 MTIAWDTALTGLGTSTITLDIGTVGRPDGITQFATNSVLAAASINGAVFGNLLGLEVNNEGFVTATFENGIRQKIYKIPLAVFPNPNGLAARNGNSYGQSDTSGAFSLLEATRGTAGRIDPNVLEASTVELAEEFTNLITAQRAYSANSKIITTADEMLDELIRIKR 513
            +T+ W  A +GL   +IT++ GT G  DG TQF + S L  AS+NGA+FGN+ G+ V+ +G V A F+NGI + I+K+PL  F NPNGL   NGN+Y ++D SG  SLLEA  G AG I P  LEASTV+LA EFT+LIT QRAYSA ++IITT+DEML+E+ RIKR
Sbjct:  273 VTVPW-AASSGLAAQSITVNFGTPGAADGFTQFDSVSSLINASVNGALFGNITGVRVDEDGVVRAQFDNGIERSIFKVPLGTFQNPNGLGPVNGNAYQRTDQSGDVSLLEANTGGAGAIAPASLEASTVDLASEFTDLITTQRAYSAATRIITTSDEMLEEVTRIKR 438          
BLAST of mRNA_P-wetherbeei_contig15082.3.1 vs. uniprot
Match: A0A832EV49_9RHOB (Flagellar hook protein FlgE n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A832EV49_9RHOB)

HSP 1 Score: 176 bits (447), Expect = 3.170e-50
Identity = 94/170 (55.29%), Postives = 130/170 (76.47%), Query Frame = 1
Query:    4 PSPMTIAWDTALTGLGTSTITLDIGTVGRPDGITQFATNSVLAAASINGAVFGNLLGLEVNNEGFVTATFENGIRQKIYKIPLAVFPNPNGLAARNGNSYGQSDTSGAFSLLEATRGTAGRIDPNVLEASTVELAEEFTNLITAQRAYSANSKIITTADEMLDELIRIKR 513
            P+     W ++L G+   TI +++G+VG   G+TQF +NSVL ++ ++GAVFG+L G++V+++GFVTA+F NG+ QKIY+IPLA F NPNGL A +G+++  S  SG+ +L  A  G AG+I    LE+S V+LA+EFTNLIT QRAYSA+S+IITTAD+MLDELIRIKR
Sbjct:  293 PAANAFNWASSL-GVSGQTIKINLGSVGASGGLTQFDSNSVLDSSIVDGAVFGSLTGVDVDDQGFVTASFSNGVVQKIYQIPLATFINPNGLKAEDGDAFSLSQESGSLNLKTAGAG-AGKISSKTLESSNVDLAKEFTNLITVQRAYSASSRIITTADQMLDELIRIKR 460          
BLAST of mRNA_P-wetherbeei_contig15082.3.1 vs. uniprot
Match: A0A3A0EPT8_9PROT (Flagellar hook protein FlgE n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A3A0EPT8_9PROT)

HSP 1 Score: 175 bits (444), Expect = 6.620e-50
Identity = 92/169 (54.44%), Postives = 120/169 (71.01%), Query Frame = 1
Query:    7 SPMTIAWDTALTGLGTSTITLDIGTVGRPDGITQFATNSVLAAASINGAVFGNLLGLEVNNEGFVTATFENGIRQKIYKIPLAVFPNPNGLAARNGNSYGQSDTSGAFSLLEATRGTAGRIDPNVLEASTVELAEEFTNLITAQRAYSANSKIITTADEMLDELIRIKR 513
            SP+ I W    +    S IT++ GT G  DG TQF T S L ++S NGA FGN+ G+ +  +G VTA F+NG+ +++Y++P+AVF NP+GL  R GNSY  SD SGAF+L  A  G AG + P+ LEASTV+LA EF+ LIT QR +SAN+++ITTADEMLDEL RIKR
Sbjct:  278 SPLNIDWTGGASDADNSAITINWGTDGDVDGFTQFDTPSTLISSSTNGARFGNVNGVSIAKDGRVTALFDNGLTKEVYELPIAVFQNPDGLTRRQGNSYDLSDISGAFTLQVAGDGGAGTVAPSTLEASTVDLAREFSELITTQRGFSANTRVITTADEMLDELNRIKR 446          
BLAST of mRNA_P-wetherbeei_contig15082.3.1 vs. uniprot
Match: UPI00142174CD (flagellar hook protein FlgE n=1 Tax=Pelagibius litoralis TaxID=374515 RepID=UPI00142174CD)

HSP 1 Score: 174 bits (440), Expect = 1.490e-49
Identity = 92/170 (54.12%), Postives = 116/170 (68.24%), Query Frame = 1
Query:    4 PSPMTIAWDTALTGLGTSTITLDIGTVGRPDGITQFATNSVLAAASINGAVFGNLLGLEVNNEGFVTATFENGIRQKIYKIPLAVFPNPNGLAARNGNSYGQSDTSGAFSLLEATRGTAGRIDPNVLEASTVELAEEFTNLITAQRAYSANSKIITTADEMLDELIRIKR 513
            P   TI      TG G   IT+D+GT+G  +G++QF  N  +     +G  FGN  G+ +N+EG VTA F+NG RQ IY++PL +F NPNGL AR+GN Y ++D SG F L  A  G AG I P  LEASTV+LAEEFT +I  QRAYSAN+K+ITTAD ML+ELIR+KR
Sbjct:  251 PVTPTITLTGFTTGAGNEVITVDLGTIGSTNGLSQFGGNFTIGNIDQDGVRFGNYTGININDEGIVTAVFDNGQRQDIYQLPLGMFRNPNGLQARSGNVYLETDRSGNFQLNLAGAGGAGDIAPAALEASTVDLAEEFTKMIITQRAYSANTKVITTADSMLEELIRVKR 420          
BLAST of mRNA_P-wetherbeei_contig15082.3.1 vs. uniprot
Match: A0A2A5DRG0_9PROT (Flagellar hook protein FlgE n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2A5DRG0_9PROT)

HSP 1 Score: 176 bits (447), Expect = 1.760e-49
Identity = 96/171 (56.14%), Postives = 124/171 (72.51%), Query Frame = 1
Query:   16 TIAWDTALTGLGTSTITLDIGTVG-----RPDGITQFATNSVLAAASINGAVFGNLLGLEVNNEGFVTATFENGIRQKIYKIPLAVFPNPNGLAARNGNSYGQSDTSGAFSLLEATRGTAGRIDPNVLEASTVELAEEFTNLITAQRAYSANSKIITTADEMLDELIRIKR 513
            TI W    T    ST+ L+ GT G     + +G+TQF+++  ++  + NG  FG+  G+ +N+EG VTA F+NG  + IY+IPLA F +PNGL A+NGN YGQ+D+SG F L  A  GTAG++  + LEASTV+LAEEFTN+I AQRAYSAN+KIITTADEMLDELIRIKR
Sbjct:  388 TIDWANGATN---STVALNFGTSGPLGTAQTNGVTQFSSDFFVSFVNQNGVSFGSFTGVNINDEGVVTAQFDNGDSRAIYRIPLATFASPNGLEAKNGNVYGQTDSSGNFFLNFANTGTAGKVAASALEASTVDLAEEFTNMIIAQRAYSANAKIITTADEMLDELIRIKR 555          
BLAST of mRNA_P-wetherbeei_contig15082.3.1 vs. uniprot
Match: A0A1Y5G7Z3_9PROT (Flagellar hook protein FlgE n=1 Tax=Rhodospirillales bacterium 47_12_T64 TaxID=1856302 RepID=A0A1Y5G7Z3_9PROT)

HSP 1 Score: 176 bits (446), Expect = 2.030e-49
Identity = 95/168 (56.55%), Postives = 116/168 (69.05%), Query Frame = 1
Query:   10 PMTIAWDTALTGLGTSTITLDIGTVGRPDGITQFATNSVLAAASINGAVFGNLLGLEVNNEGFVTATFENGIRQKIYKIPLAVFPNPNGLAARNGNSYGQSDTSGAFSLLEATRGTAGRIDPNVLEASTVELAEEFTNLITAQRAYSANSKIITTADEMLDELIRIKR 513
            P+TI W    TG   STITLD GT+G  DGI QFA N ++ +   +G  FGN  G+ ++ EG VTA F+NG +  I +IPLA+FPNPNGL AR GN+Y  +  SG F L     G AG I  + LEAS ++LAEEFTN+I  QRAYSA++KIITTADEMLDELIRI R
Sbjct:  376 PLTIDWSIGSTGATNSTITLDTGTIGAADGIIQFAGNFIVNSTEQDGVSFGNFRGVSISEEGVVTALFDNGEQLDIAQIPLAMFPNPNGLEARTGNAYSSTADSGNFILNRPKVGGAGLIAASSLEASNIDLAEEFTNMIVTQRAYSASAKIITTADEMLDELIRIVR 543          
BLAST of mRNA_P-wetherbeei_contig15082.3.1 vs. uniprot
Match: A0A3M1JZC2_9PROT (Flagellar hook protein FlgE n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M1JZC2_9PROT)

HSP 1 Score: 174 bits (440), Expect = 2.580e-49
Identity = 91/169 (53.85%), Postives = 120/169 (71.01%), Query Frame = 1
Query:    7 SPMTIAWDTALTGLGTSTITLDIGTVGRPDGITQFATNSVLAAASINGAVFGNLLGLEVNNEGFVTATFENGIRQKIYKIPLAVFPNPNGLAARNGNSYGQSDTSGAFSLLEATRGTAGRIDPNVLEASTVELAEEFTNLITAQRAYSANSKIITTADEMLDELIRIKR 513
            +P+ I W  A      S IT++ GT G  DG TQF T S L +AS+NGA FGN+ G+ +  +G VTA F+NG+ +++Y++P+AVF NP+GL  R GNS+  SD SG F+L  A  G +G + P+ LEASTV+LA EFT LIT QR +SA++KIITTADEMLDEL R+KR
Sbjct:  278 APLNIDWTGAAADAANSQITINWGTDGDVDGFTQFDTPSTLISASVNGARFGNVNGVSIAEDGRVTALFDNGLTKEVYELPIAVFQNPDGLTRRQGNSFDLSDDSGEFTLQIAGDGGSGNVAPSTLEASTVDLAREFTELITTQRGFSASTKIITTADEMLDELNRLKR 446          
BLAST of mRNA_P-wetherbeei_contig15082.3.1 vs. uniprot
Match: A0A192II39_9HYPH (Flagellar hook protein FlgE n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A192II39_9HYPH)

HSP 1 Score: 172 bits (437), Expect = 6.740e-49
Identity = 91/167 (54.49%), Postives = 124/167 (74.25%), Query Frame = 1
Query:   13 MTIAWDTALTGLGTSTITLDIGTVGRPDGITQFATNSVLAAASINGAVFGNLLGLEVNNEGFVTATFENGIRQKIYKIPLAVFPNPNGLAARNGNSYGQSDTSGAFSLLEATRGTAGRIDPNVLEASTVELAEEFTNLITAQRAYSANSKIITTADEMLDELIRIKR 513
            + I WD +L G+  ST+ +D G+ G  DG+TQF   S + + SINGAVFG+L G+E++  G VTA F+NG RQK +++PLA F N +GL++ NGN++ Q++ SG FSL  A  G AG I P+ LE+STV+LAEEFTN+I  QRA+SAN KIIT+ DEML+EL+R+KR
Sbjct:  278 LNITWDASL-GVNNSTVAVDFGSDGATDGMTQFNGISQIISNSINGAVFGSLTGVEIDENGIVTAFFDNGTRQKAFQLPLATFTNNSGLSSVNGNAFQQNNDSGNFSLNVAGVGGAGFIAPSSLESSTVDLAEEFTNMIQTQRAFSANGKIITSVDEMLEELVRLKR 443          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15082.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A351T6M1_9PROT2.070e-8079.04Flagellar hook protein FlgE n=3 Tax=Alphaproteobac... [more]
A0A3M1G8D1_9PROT1.690e-5053.25Flagellar hook protein FlgE n=1 Tax=Alphaproteobac... [more]
A0A7Y8MDL9_9PROT2.010e-5056.29Flagellar hook protein FlgE n=1 Tax=Alphaproteobac... [more]
A0A832EV49_9RHOB3.170e-5055.29Flagellar hook protein FlgE n=1 Tax=Rhodobacterace... [more]
A0A3A0EPT8_9PROT6.620e-5054.44Flagellar hook protein FlgE n=1 Tax=Proteobacteria... [more]
UPI00142174CD1.490e-4954.12flagellar hook protein FlgE n=1 Tax=Pelagibius lit... [more]
A0A2A5DRG0_9PROT1.760e-4956.14Flagellar hook protein FlgE n=1 Tax=Rhodospirillac... [more]
A0A1Y5G7Z3_9PROT2.030e-4956.55Flagellar hook protein FlgE n=1 Tax=Rhodospirillal... [more]
A0A3M1JZC2_9PROT2.580e-4953.85Flagellar hook protein FlgE n=1 Tax=Alphaproteobac... [more]
A0A192II39_9HYPH6.740e-4954.49Flagellar hook protein FlgE n=2 Tax=Alphaproteobac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15082contigP-wetherbeei_contig15082:1122..1637 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1122135.KB893140_gene1296
Preferred nameflgE
PFAMsFlaE,Flg_bb_rod,Flg_bbr_C
Model size516
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02390
KEGG Pathwayko02040,map02040
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.6e-47
EggNOG OGsCOG1749@1|root,COG1749@2|Bacteria,1MU5J@1224|Proteobacteria,2TSF2@28211|Alphaproteobacteria
DescriptionFlagellar hook protein flgE
Cds size504
COG categoryN
BRITEko00000,ko00001,ko02035
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186044.026282-CDS-P-wetherbeei_contig15082:1121..16251683186044.026282-CDS-P-wetherbeei_contig15082:1121..1625Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15082 1122..1625 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186044.0375986-UTR-P-wetherbeei_contig15082:1625..16371683186044.0375986-UTR-P-wetherbeei_contig15082:1625..1637Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15082 1626..1637 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15082.3.1prot_P-wetherbeei_contig15082.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15082 1122..1625 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15082.3.1

>prot_P-wetherbeei_contig15082.3.1 ID=prot_P-wetherbeei_contig15082.3.1|Name=mRNA_P-wetherbeei_contig15082.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=168bp
MTIAWDTALTGLGTSTITLDIGTVGRPDGITQFATNSVLAAASINGAVFG
NLLGLEVNNEGFVTATFENGIRQKIYKIPLAVFPNPNGLAARNGNSYGQS
DTSGAFSLLEATRGTAGRIDPNVLEASTVELAEEFTNLITAQRAYSANSK
IITTADEMLDELIRIKR*
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mRNA from alignment at P-wetherbeei_contig15082:1122..1637-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15082.3.1 ID=mRNA_P-wetherbeei_contig15082.3.1|Name=mRNA_P-wetherbeei_contig15082.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=516bp|location=Sequence derived from alignment at P-wetherbeei_contig15082:1122..1637- (Phaeothamnion wetherbeei SAG_119_79)
ACCCCATCACCGATGACAATTGCATGGGACACGGCGCTCACCGGTCTGGG CACATCTACCATTACCCTAGATATCGGCACTGTGGGCCGACCCGACGGCA TTACCCAGTTTGCCACCAATTCAGTGCTGGCTGCCGCCTCCATCAACGGT GCGGTGTTTGGCAATCTGCTGGGACTGGAAGTTAATAATGAAGGTTTTGT GACCGCAACTTTCGAAAATGGCATCCGGCAGAAAATTTATAAAATCCCTC TGGCCGTATTTCCCAATCCGAATGGGCTCGCGGCGCGTAACGGCAATTCT TATGGCCAATCGGACACGTCGGGCGCTTTCAGCCTGCTGGAAGCCACCCG GGGCACGGCGGGACGAATAGACCCTAACGTGCTGGAAGCATCGACCGTCG AACTGGCGGAAGAATTCACCAATCTGATTACAGCGCAACGGGCATATTCG GCCAACTCCAAAATCATCACCACAGCCGATGAAATGCTCGATGAGCTGAT CCGTATCAAACGCTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15082:1122..1637-

>mRNA_P-wetherbeei_contig15082.3.1 ID=mRNA_P-wetherbeei_contig15082.3.1|Name=mRNA_P-wetherbeei_contig15082.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig15082:1122..1637- (Phaeothamnion wetherbeei SAG_119_79)
ATGACAATTGCATGGGACACGGCGCTCACCGGTCTGGGCACATCTACCAT
TACCCTAGATATCGGCACTGTGGGCCGACCCGACGGCATTACCCAGTTTG
CCACCAATTCAGTGCTGGCTGCCGCCTCCATCAACGGTGCGGTGTTTGGC
AATCTGCTGGGACTGGAAGTTAATAATGAAGGTTTTGTGACCGCAACTTT
CGAAAATGGCATCCGGCAGAAAATTTATAAAATCCCTCTGGCCGTATTTC
CCAATCCGAATGGGCTCGCGGCGCGTAACGGCAATTCTTATGGCCAATCG
GACACGTCGGGCGCTTTCAGCCTGCTGGAAGCCACCCGGGGCACGGCGGG
ACGAATAGACCCTAACGTGCTGGAAGCATCGACCGTCGAACTGGCGGAAG
AATTCACCAATCTGATTACAGCGCAACGGGCATATTCGGCCAACTCCAAA
ATCATCACCACAGCCGATGAAATGCTCGATGAGCTGATCCGTATCAAACG
CTAA
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