mRNA_P-wetherbeei_contig1507.8.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1507.8.1
Unique NamemRNA_P-wetherbeei_contig1507.8.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1507.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1507contigP-wetherbeei_contig1507:4760..5792 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1033
Hectar predicted targeting categoryother localisation
Exons1
Cds size882
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186043.6840258-UTR-P-wetherbeei_contig1507:4759..47741683186043.6840258-UTR-P-wetherbeei_contig1507:4759..4774Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1507 4760..4774 +
1683186043.713646-UTR-P-wetherbeei_contig1507:5656..57921683186043.713646-UTR-P-wetherbeei_contig1507:5656..5792Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1507 5657..5792 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186043.6960912-CDS-P-wetherbeei_contig1507:4774..56561683186043.6960912-CDS-P-wetherbeei_contig1507:4774..5656Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1507 4775..5656 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1507.8.1prot_P-wetherbeei_contig1507.8.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1507 4775..5656 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1507.8.1

>prot_P-wetherbeei_contig1507.8.1 ID=prot_P-wetherbeei_contig1507.8.1|Name=mRNA_P-wetherbeei_contig1507.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=294bp
MPARSVNVVCVNSVDGTHICSCTLTLRNGMPCRHWCACHFNHPKDAPSSI
AVINPRWFLEPDEVEGGDGGDSNGGSIGSGCGSDDVGEGDSRGNNVDVGD
AYDVYAATALLLLAPGKEKKEVLAAATAAATAAATGEGVAGSFDANAGAS
SASAQMTAAATTAAASACVPSRGAGAGEETPMFDMGESSSAAGSVGAGAA
AAAAKPSLSSCRQAKASWLRQKAWRRRQYADIQAGHNEVMAIFENCTLSS
HHVKEYRNRVLLLANEMYEKTPEGRADVAPGRRAEAGVSGSAG*
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mRNA from alignment at P-wetherbeei_contig1507:4760..5792+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1507.8.1 ID=mRNA_P-wetherbeei_contig1507.8.1|Name=mRNA_P-wetherbeei_contig1507.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1033bp|location=Sequence derived from alignment at P-wetherbeei_contig1507:4760..5792+ (Phaeothamnion wetherbeei SAG_119_79)
GTGGTTGCTGGCGGCATGCCAGCAAGATCGGTGAATGTCGTATGTGTCAA
CTCTGTTGACGGCACGCACATTTGCTCCTGCACGCTGACGCTGCGGAACG
GCATGCCTTGCCGTCATTGGTGCGCGTGCCACTTCAACCACCCCAAGGAC
GCGCCCTCTTCGATCGCTGTGATCAACCCACGTTGGTTCTTAGAGCCGGA
CGAGGTTGAAGGCGGCGACGGCGGCGACAGCAACGGCGGCAGCATCGGAA
GCGGGTGCGGCAGCGATGACGTGGGCGAGGGTGACAGCCGCGGCAACAAT
GTTGATGTAGGTGACGCATATGACGTCTACGCGGCGACGGCCCTCCTTCT
CCTTGCACCGGGGAAGGAGAAGAAGGAGGTTTTGGCGGCGGCGACGGCGG
CGGCGACAGCAGCGGCGACGGGAGAGGGAGTTGCCGGCAGCTTCGATGCG
AACGCTGGTGCCAGCAGCGCCTCAGCGCAAATGACGGCGGCGGCAACGAC
GGCGGCAGCATCTGCGTGTGTGCCTAGTCGGGGGGCGGGGGCTGGGGAGG
AGACGCCGATGTTCGACATGGGAGAGTCCTCAAGCGCTGCCGGCAGTGTC
GGTGCCGGTGCCGCCGCCGCGGCTGCAAAACCGTCGCTGTCATCCTGCCG
CCAGGCCAAGGCCAGCTGGCTTCGGCAGAAGGCATGGCGGCGGCGGCAGT
ACGCTGATATACAAGCAGGGCACAACGAGGTAATGGCGATTTTCGAGAAC
TGCACGCTGTCATCACACCACGTCAAAGAATACCGGAATCGCGTGTTGCT
TTTGGCGAACGAGATGTACGAGAAGACGCCTGAAGGACGTGCAGACGTGG
CGCCAGGGAGGAGGGCTGAGGCGGGCGTGTCGGGTAGCGCAGGCTAGGTC
AGGCGTAGCGTTTTACTGGACCCAACACCCCGTGGGCGGAAAATGCTCGG
GGCAAAGCCTAAAAGGCGTCACTTGGATAATTTCGAGCGATCCTGGGGGC
GTTAATTGGACAAATTAAGTCAACACCTCCTAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1507:4760..5792+

>mRNA_P-wetherbeei_contig1507.8.1 ID=mRNA_P-wetherbeei_contig1507.8.1|Name=mRNA_P-wetherbeei_contig1507.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=882bp|location=Sequence derived from alignment at P-wetherbeei_contig1507:4760..5792+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCAGCAAGATCGGTGAATGTCGTATGTGTCAACTCTGTTGACGGCAC
GCACATTTGCTCCTGCACGCTGACGCTGCGGAACGGCATGCCTTGCCGTC
ATTGGTGCGCGTGCCACTTCAACCACCCCAAGGACGCGCCCTCTTCGATC
GCTGTGATCAACCCACGTTGGTTCTTAGAGCCGGACGAGGTTGAAGGCGG
CGACGGCGGCGACAGCAACGGCGGCAGCATCGGAAGCGGGTGCGGCAGCG
ATGACGTGGGCGAGGGTGACAGCCGCGGCAACAATGTTGATGTAGGTGAC
GCATATGACGTCTACGCGGCGACGGCCCTCCTTCTCCTTGCACCGGGGAA
GGAGAAGAAGGAGGTTTTGGCGGCGGCGACGGCGGCGGCGACAGCAGCGG
CGACGGGAGAGGGAGTTGCCGGCAGCTTCGATGCGAACGCTGGTGCCAGC
AGCGCCTCAGCGCAAATGACGGCGGCGGCAACGACGGCGGCAGCATCTGC
GTGTGTGCCTAGTCGGGGGGCGGGGGCTGGGGAGGAGACGCCGATGTTCG
ACATGGGAGAGTCCTCAAGCGCTGCCGGCAGTGTCGGTGCCGGTGCCGCC
GCCGCGGCTGCAAAACCGTCGCTGTCATCCTGCCGCCAGGCCAAGGCCAG
CTGGCTTCGGCAGAAGGCATGGCGGCGGCGGCAGTACGCTGATATACAAG
CAGGGCACAACGAGGTAATGGCGATTTTCGAGAACTGCACGCTGTCATCA
CACCACGTCAAAGAATACCGGAATCGCGTGTTGCTTTTGGCGAACGAGAT
GTACGAGAAGACGCCTGAAGGACGTGCAGACGTGGCGCCAGGGAGGAGGG
CTGAGGCGGGCGTGTCGGGTAGCGCAGGCTAG
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