mRNA_P-wetherbeei_contig1506.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1506.1.1
Unique NamemRNA_P-wetherbeei_contig1506.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1506.1.1 vs. uniprot
Match: A0A6H5KUE0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KUE0_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 2.060e-27
Identity = 112/391 (28.64%), Postives = 171/391 (43.73%), Query Frame = 1 
Query:  442 LGEAIYRLERWLGAKQDAIRDREMAVLAEFGRLMETLDGSFDAPSSLEFTSWL---GAREAAAQRMA---------EAADGARLRQ----GGVRSAAAVPIAMVDS--GAATKRAKALLADAEKQLAVAISTRAKVLGGAPLSDKANPRGMLRR---SGPVLPLGKFTPLRELAPRELETARLVVWLCFLRRYAAHLATALDKGLLRSDFDAVHAAAALREALGAGVEARLRLQLRLFDRDSDGWLDDAETAAAVEAMTEPLRHAVGDVHAMLG--GLDKAARRAMPKAIKWAAWDVLELPVKRRCAFAWGAGLRETGPAPTDRAASVDGFVASQQEHFRELGAVSAGLTREVDQARWDWHDMRKRQRRVAIYGLVLFAGTVTADALVQLM 1545
            +G  +  ++  LGAKQ+ IR  E+ V+  F  ++  LDGS +     EF +WL   G  +A+              E A G ++      G     AA   A V++   AA+ R  AL+ D E  L      R +      L  K    G        G        +P   ++  +L  ARL      L  + + L+++L K  L++        AA R A  A  E RL     LFD   DG LD      AV+A+   +  A    +A      LDK     MP  +K+  WDV+E+P+KRRC+FAW    ++ GP   +   S D F  S+++HF E+ +V+     E  + R  WH  RK ++   +YG  LF   +  D L++++
Sbjct:  106 VGRVLDDMDTRLGAKQEKIRVHEIGVIERFAAVVSALDGSLEPREGDEFLAWLRSQGFDDASPTPQPGGGPXXXXXETAAGTKVENKCSNGKSEGGAAEERAEVEAFLSAASARLNALVVDKEDAL---FGDRGEAEAEESLQAKGERGGXXXXXXXGGDASGEPVVSP--NMSDEDLYQARLGAHRAMLCHFLSLLSSSLGKQQLKTGLSLGEVVAATRSAYLAAPEDRLAAVYPLFDTHGDGHLDTESVDLAVDAVVLSVTAASERCYAAAARPALDKKTAAVMPATMKYVLWDVMEVPMKRRCSFAWAENRKQVGP--DEWRVSWDQFAPSRRQHFPEMDSVARDYVAEFSRRRSAWHTSRKGRKEAMVYGSALFVAVLIIDNLLKMV 489
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BLAST of mRNA_P-wetherbeei_contig1506.1.1 vs. uniprot
Match: A0A836CPD1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPD1_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.150e-19
Identity = 43/104 (41.35%), Postives = 63/104 (60.58%), Query Frame = 1 
Query: 1228 MPKAIKWAAWDVLELPVKRRCAFAWGAGLRETGPAPTDRAASVDGFVASQQEHFRELGAVSAGLTREVDQARWDWHDMRKRQRRVAIYGLVLFAGTVTADALVQ 1539
            MP A+++A WD L+ P KRRCAFA+  G ++ GP       + D F+ +Q+ +F +L  V   L   ++  RW WH +RKR++R AIYG +LF+ TV  D   Q
Sbjct:    1 MPSALRYATWDRLDFPSKRRCAFAFAEGRKQVGPVEWH--VTADAFLETQRTYFVDLVRVGGALMDVMEDERWQWHMLRKRRKRAAIYGALLFSATVVLDTWTQ 102
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1506.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KUE0_9PHAE2.060e-2728.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CPD1_9STRA1.150e-1941.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1506contigP-wetherbeei_contig1506:53..1864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog36331.EPrPI00000013955
Model size1623
Max annot lvl121069|Pythiales
Hectar predicted targeting categorymitochondrion
Exons2
Evalue1.63e-07
EggNOG OGs2CQWK@1|root,2S45X@2759|Eukaryota,1MANP@121069|Pythiales
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_002220.1
Descriptionfunction. Source PGD
Cds size1323
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186043.1876147-UTR-P-wetherbeei_contig1506:52..2771683186043.1876147-UTR-P-wetherbeei_contig1506:52..277Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1506 53..277 +
1683186043.2125738-UTR-P-wetherbeei_contig1506:1789..18641683186043.2125738-UTR-P-wetherbeei_contig1506:1789..1864Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1506 1790..1864 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186043.1965063-CDS-P-wetherbeei_contig1506:277..4191683186043.1965063-CDS-P-wetherbeei_contig1506:277..419Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1506 278..419 +
1683186043.2042425-CDS-P-wetherbeei_contig1506:608..17891683186043.2042425-CDS-P-wetherbeei_contig1506:608..1789Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1506 609..1789 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1506.1.1prot_P-wetherbeei_contig1506.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1506 278..1789 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1506.1.1

>prot_P-wetherbeei_contig1506.1.1 ID=prot_P-wetherbeei_contig1506.1.1|Name=mRNA_P-wetherbeei_contig1506.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=441bp
MRAFFGQAAAARAIMLRQGASTVLSSCGTLPRDVSLSRRRRPREHCLSTA
SVAAKNLRRINRDEEPPQDAGRLGEAIYRLERWLGAKQDAIRDREMAVLA
EFGRLMETLDGSFDAPSSLEFTSWLGAREAAAQRMAEAADGARLRQGGVR
SAAAVPIAMVDSGAATKRAKALLADAEKQLAVAISTRAKVLGGAPLSDKA
NPRGMLRRSGPVLPLGKFTPLRELAPRELETARLVVWLCFLRRYAAHLAT
ALDKGLLRSDFDAVHAAAALREALGAGVEARLRLQLRLFDRDSDGWLDDA
ETAAAVEAMTEPLRHAVGDVHAMLGGLDKAARRAMPKAIKWAAWDVLELP
VKRRCAFAWGAGLRETGPAPTDRAASVDGFVASQQEHFRELGAVSAGLTR
EVDQARWDWHDMRKRQRRVAIYGLVLFAGTVTADALVQLM*
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mRNA from alignment at P-wetherbeei_contig1506:53..1864+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1506.1.1 ID=mRNA_P-wetherbeei_contig1506.1.1|Name=mRNA_P-wetherbeei_contig1506.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1812bp|location=Sequence derived from alignment at P-wetherbeei_contig1506:53..1864+ (Phaeothamnion wetherbeei SAG_119_79)
GGCACACGGCACGCGGCCCCCGTGCTGGAGGAGTAACGATAACGCAAGAA
GTAGCGCGTCGACCTCCACCTGCAGTATCGGCACGGAGGTAACGATAACG
GTAGCGAAGCAACGGACTAACGAAGTAGTCAAATAGTTCTTACAAGGTTT
TACTGTACTTCCCCCATATTCCGCACTGTTTGGGGAAGCAACAGAACGCG
CAATTCGCACCGCCATCTTACCCCCATGAGAGCATTCTTTGGGCAAGCGG
CCGCAGCGCGCGCCATTATGCTAAGGCAGGGCGCCTCCACGGTTCTCTCA
TCGTGTGGCACGCTGCCGCGAGACGTCTCTCTTTCCCGAAGACGACGACC
GCGAGAGCACTGTCTGTGTAAGTGTCATACTTTGTAAACTCTTCCTCCCG
CGTATGTGTTTCTTGAACGATATCGAAATCTCCCTCTTCTGTCTCCTCCT
TCCCCTCCCTGTCCTTTCTCTCGTCCTTCACTCTCTCGCACCGCTGTCTC
CCACCTCCGTTCCGCCACTTTCACGATGGTCCACGCGTTGGTGCTTGTGT
AAGCAGCTACGGCGTCGGTGGCAGCCAAAAACCTGCGGCGCATCAACCGA
GACGAGGAGCCGCCGCAGGACGCGGGCAGGTTGGGGGAAGCCATATATCG
CTTGGAACGGTGGCTCGGGGCGAAACAAGACGCCATCCGCGATCGGGAGA
TGGCCGTCCTCGCCGAGTTTGGTCGCCTGATGGAGACCCTGGACGGATCT
TTCGACGCGCCATCATCGTTGGAGTTTACATCATGGCTTGGCGCCCGGGA
GGCGGCGGCGCAGCGGATGGCTGAGGCGGCGGACGGCGCTAGGCTCCGCC
AAGGCGGTGTACGGAGCGCGGCTGCGGTGCCGATTGCAATGGTGGACAGT
GGGGCGGCCACGAAGCGCGCCAAGGCGCTCCTTGCCGACGCGGAAAAGCA
ACTGGCTGTCGCAATCTCCACCCGTGCGAAAGTCCTTGGGGGGGCACCTC
TCAGCGATAAAGCGAACCCCCGAGGGATGCTGCGCCGATCCGGCCCGGTG
CTGCCACTGGGAAAGTTCACGCCGTTGCGTGAACTCGCTCCCCGAGAGCT
CGAGACGGCACGCCTGGTGGTTTGGCTGTGCTTCCTGCGGAGGTACGCAG
CCCACCTCGCCACGGCGCTGGATAAGGGACTTCTGCGCTCAGATTTCGAT
GCGGTGCATGCCGCGGCCGCCCTGCGCGAGGCGCTCGGGGCGGGGGTCGA
GGCGCGGCTCCGGCTCCAGCTGCGGCTGTTCGACCGCGACAGCGACGGGT
GGCTCGACGACGCCGAGACGGCCGCAGCGGTTGAAGCCATGACGGAGCCC
TTGCGGCATGCTGTTGGCGACGTCCACGCGATGCTCGGCGGGCTGGATAA
GGCGGCGCGGCGGGCCATGCCCAAAGCCATCAAATGGGCGGCCTGGGACG
TTCTCGAGCTGCCCGTCAAGCGCCGCTGCGCGTTTGCCTGGGGCGCCGGC
CTGCGGGAGACCGGGCCGGCGCCAACGGACCGCGCGGCGAGCGTCGACGG
CTTCGTGGCCTCGCAGCAGGAGCACTTTCGGGAGCTGGGTGCGGTGTCAG
CGGGGCTCACGCGTGAGGTAGACCAGGCGCGCTGGGATTGGCACGATATG
CGCAAACGGCAGCGGCGGGTTGCTATTTACGGGCTGGTGTTGTTCGCAGG
CACCGTTACCGCGGACGCGCTCGTGCAGCTCATGTGAGCGCTCGACGCTG
CAAGTGACTAGATATCCAGATGTAGAGGAGCGTTGGGTGATAATTGGAAA
AATGTAACCGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1506:53..1864+

>mRNA_P-wetherbeei_contig1506.1.1 ID=mRNA_P-wetherbeei_contig1506.1.1|Name=mRNA_P-wetherbeei_contig1506.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1323bp|location=Sequence derived from alignment at P-wetherbeei_contig1506:53..1864+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGAGCATTCTTTGGGCAAGCGGCCGCAGCGCGCGCCATTATGCTAAG
GCAGGGCGCCTCCACGGTTCTCTCATCGTGTGGCACGCTGCCGCGAGACG
TCTCTCTTTCCCGAAGACGACGACCGCGAGAGCACTGTCTGTCTACGGCG
TCGGTGGCAGCCAAAAACCTGCGGCGCATCAACCGAGACGAGGAGCCGCC
GCAGGACGCGGGCAGGTTGGGGGAAGCCATATATCGCTTGGAACGGTGGC
TCGGGGCGAAACAAGACGCCATCCGCGATCGGGAGATGGCCGTCCTCGCC
GAGTTTGGTCGCCTGATGGAGACCCTGGACGGATCTTTCGACGCGCCATC
ATCGTTGGAGTTTACATCATGGCTTGGCGCCCGGGAGGCGGCGGCGCAGC
GGATGGCTGAGGCGGCGGACGGCGCTAGGCTCCGCCAAGGCGGTGTACGG
AGCGCGGCTGCGGTGCCGATTGCAATGGTGGACAGTGGGGCGGCCACGAA
GCGCGCCAAGGCGCTCCTTGCCGACGCGGAAAAGCAACTGGCTGTCGCAA
TCTCCACCCGTGCGAAAGTCCTTGGGGGGGCACCTCTCAGCGATAAAGCG
AACCCCCGAGGGATGCTGCGCCGATCCGGCCCGGTGCTGCCACTGGGAAA
GTTCACGCCGTTGCGTGAACTCGCTCCCCGAGAGCTCGAGACGGCACGCC
TGGTGGTTTGGCTGTGCTTCCTGCGGAGGTACGCAGCCCACCTCGCCACG
GCGCTGGATAAGGGACTTCTGCGCTCAGATTTCGATGCGGTGCATGCCGC
GGCCGCCCTGCGCGAGGCGCTCGGGGCGGGGGTCGAGGCGCGGCTCCGGC
TCCAGCTGCGGCTGTTCGACCGCGACAGCGACGGGTGGCTCGACGACGCC
GAGACGGCCGCAGCGGTTGAAGCCATGACGGAGCCCTTGCGGCATGCTGT
TGGCGACGTCCACGCGATGCTCGGCGGGCTGGATAAGGCGGCGCGGCGGG
CCATGCCCAAAGCCATCAAATGGGCGGCCTGGGACGTTCTCGAGCTGCCC
GTCAAGCGCCGCTGCGCGTTTGCCTGGGGCGCCGGCCTGCGGGAGACCGG
GCCGGCGCCAACGGACCGCGCGGCGAGCGTCGACGGCTTCGTGGCCTCGC
AGCAGGAGCACTTTCGGGAGCTGGGTGCGGTGTCAGCGGGGCTCACGCGT
GAGGTAGACCAGGCGCGCTGGGATTGGCACGATATGCGCAAACGGCAGCG
GCGGGTTGCTATTTACGGGCTGGTGTTGTTCGCAGGCACCGTTACCGCGG
ACGCGCTCGTGCAGCTCATGTGA
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