mRNA_P-wetherbeei_contig10401.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10401.1.1
Unique NamemRNA_P-wetherbeei_contig10401.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10401.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10401contigP-wetherbeei_contig10401:383..1913 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1531
Hectar predicted targeting categorymitochondrion
Exons1
Cds size990
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185867.938699-UTR-P-wetherbeei_contig10401:382..8581683185867.938699-UTR-P-wetherbeei_contig10401:382..858Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10401 383..858 -
1683185867.958793-UTR-P-wetherbeei_contig10401:1848..19131683185867.958793-UTR-P-wetherbeei_contig10401:1848..1913Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10401 1849..1913 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185867.9489422-CDS-P-wetherbeei_contig10401:858..18481683185867.9489422-CDS-P-wetherbeei_contig10401:858..1848Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10401 859..1848 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10401.1.1prot_P-wetherbeei_contig10401.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10401 859..1848 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10401.1.1

>prot_P-wetherbeei_contig10401.1.1 ID=prot_P-wetherbeei_contig10401.1.1|Name=mRNA_P-wetherbeei_contig10401.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=330bp
MFFAGRRVGLRQRGAYLRQRRLRRLQKRVIAAWAADAWDTRLARGALRAL
SRLAARCRAKATRIRALSVAWGDKARIGASVGGAALLWPLALGRVLGRGP
ESVEAFFRVWKAAAATARRERLAQTDAADFHLRKALSAAVTAWLAAAAVG
PERRAAAQEKSAAADSFRRTALVRRALRSWRNAAVAATKAAMEAEVARLT
APVRAAAATAAAAAAHARALWQTPSDAVAVNRGGSGGGGGGGGITAEMGV
SVPASAAAARAPTETATAVASSPTSAAAYAALGVHAQKRRRRLEWSRELS
ARAPFLSRCLVEWHVAAAQRRLLRSYSAS*
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mRNA from alignment at P-wetherbeei_contig10401:383..1913-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10401.1.1 ID=mRNA_P-wetherbeei_contig10401.1.1|Name=mRNA_P-wetherbeei_contig10401.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1531bp|location=Sequence derived from alignment at P-wetherbeei_contig10401:383..1913- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGTCGCCACCCGCTTCGGCCGCTCTGGCGACGTCCGCGTGCGGGTC
GCGCTCCGCCGGTGGATGTTCTTCGCGGGCCGCCGCGTGGGCCTTCGGCA
GCGGGGCGCGTACCTGCGACAACGGCGGCTGCGGCGGCTGCAGAAGCGCG
TCATCGCCGCCTGGGCGGCGGATGCGTGGGACACGCGGCTCGCCCGCGGT
GCGCTGCGGGCGCTCTCGCGGCTCGCCGCACGCTGCCGCGCCAAGGCGAC
CCGCATCCGTGCGCTTTCAGTGGCGTGGGGAGACAAGGCGAGAATAGGCG
CGAGCGTCGGCGGGGCGGCACTTTTGTGGCCGCTGGCGCTTGGGCGGGTG
CTGGGTCGGGGTCCCGAAAGCGTGGAGGCCTTCTTTCGCGTCTGGAAGGC
GGCAGCTGCAACGGCGCGGCGGGAGCGTCTTGCCCAGACTGATGCAGCAG
ACTTTCACCTCCGCAAGGCACTTTCCGCTGCCGTTACGGCGTGGCTGGCG
GCTGCGGCGGTCGGCCCGGAGCGGAGAGCGGCTGCACAGGAGAAGTCCGC
CGCCGCTGATTCCTTCCGTCGTACCGCGCTCGTCCGGCGCGCGCTTCGGA
GCTGGCGGAATGCCGCCGTCGCCGCGACGAAGGCGGCGATGGAAGCGGAA
GTGGCGCGGTTGACGGCGCCGGTGCGGGCTGCCGCGGCCACCGCCGCGGC
GGCCGCCGCGCACGCCCGTGCGCTGTGGCAAACACCCAGCGACGCGGTAG
CGGTAAATAGAGGAGGAAGTGGCGGCGGCGGCGGCGGTGGTGGTATTACT
GCAGAGATGGGCGTCTCGGTGCCGGCATCGGCTGCAGCAGCACGTGCCCC
AACAGAAACGGCAACGGCAGTGGCGAGCAGCCCAACCTCGGCTGCGGCGT
ATGCGGCGTTGGGTGTTCACGCGCAGAAGCGGCGACGCCGGCTGGAGTGG
TCGCGGGAATTATCAGCACGGGCGCCCTTTCTGAGCCGTTGCCTGGTGGA
ATGGCACGTTGCCGCGGCCCAGCGACGGCTGCTGCGCTCATATTCCGCGT
CATAGCCATTGGCGTCTCCGGCGGCCTGCCGCGGGCGGTGAGTAAAATGT
TGGGTGATGTTGTCGTCTGTCGCCGTAGTGGCACGCGTTGTGATGTAAAC
ATGTTTGACAGGTGGGGGGGACACGCGAAGAAAGCGTGGTGTTTTCTTCA
TCTACTATGGGTTACAGCTATGCGCCGCGAACATATAGACTAGAAGTGGT
GGCGGCAGAGGCGGCATTTAGGTGCCAATAGATAATAAGAAACTTGCACT
GTATTCTGTTAGCTATAACAGGCTTCTCCTATAACAGGCTTCTCCCGCCA
ATGGGCGGAAGGCGGTCGCTTGGAACAGCCGCACCGGTGGGGTCAGGCGA
GCGGTAAGCGAGGATCCGCAGTGGGGGCAAGCAATAATCAGTTCCTAAGT
GCCCTGTAAAGAAAGATCCACTTCACCGGGCCTTCTCGCTCTCTCTCAAC
TCAGCATGGGGACGTAATATAACAGTTTGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10401:383..1913-

>mRNA_P-wetherbeei_contig10401.1.1 ID=mRNA_P-wetherbeei_contig10401.1.1|Name=mRNA_P-wetherbeei_contig10401.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=990bp|location=Sequence derived from alignment at P-wetherbeei_contig10401:383..1913- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCTTCGCGGGCCGCCGCGTGGGCCTTCGGCAGCGGGGCGCGTACCT
GCGACAACGGCGGCTGCGGCGGCTGCAGAAGCGCGTCATCGCCGCCTGGG
CGGCGGATGCGTGGGACACGCGGCTCGCCCGCGGTGCGCTGCGGGCGCTC
TCGCGGCTCGCCGCACGCTGCCGCGCCAAGGCGACCCGCATCCGTGCGCT
TTCAGTGGCGTGGGGAGACAAGGCGAGAATAGGCGCGAGCGTCGGCGGGG
CGGCACTTTTGTGGCCGCTGGCGCTTGGGCGGGTGCTGGGTCGGGGTCCC
GAAAGCGTGGAGGCCTTCTTTCGCGTCTGGAAGGCGGCAGCTGCAACGGC
GCGGCGGGAGCGTCTTGCCCAGACTGATGCAGCAGACTTTCACCTCCGCA
AGGCACTTTCCGCTGCCGTTACGGCGTGGCTGGCGGCTGCGGCGGTCGGC
CCGGAGCGGAGAGCGGCTGCACAGGAGAAGTCCGCCGCCGCTGATTCCTT
CCGTCGTACCGCGCTCGTCCGGCGCGCGCTTCGGAGCTGGCGGAATGCCG
CCGTCGCCGCGACGAAGGCGGCGATGGAAGCGGAAGTGGCGCGGTTGACG
GCGCCGGTGCGGGCTGCCGCGGCCACCGCCGCGGCGGCCGCCGCGCACGC
CCGTGCGCTGTGGCAAACACCCAGCGACGCGGTAGCGGTAAATAGAGGAG
GAAGTGGCGGCGGCGGCGGCGGTGGTGGTATTACTGCAGAGATGGGCGTC
TCGGTGCCGGCATCGGCTGCAGCAGCACGTGCCCCAACAGAAACGGCAAC
GGCAGTGGCGAGCAGCCCAACCTCGGCTGCGGCGTATGCGGCGTTGGGTG
TTCACGCGCAGAAGCGGCGACGCCGGCTGGAGTGGTCGCGGGAATTATCA
GCACGGGCGCCCTTTCTGAGCCGTTGCCTGGTGGAATGGCACGTTGCCGC
GGCCCAGCGACGGCTGCTGCGCTCATATTCCGCGTCATAG
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