mRNA_P-wetherbeei_contig15045.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15045.1.1
Unique NamemRNA_P-wetherbeei_contig15045.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15045.1.1 vs. uniprot
Match: A0A0R3CET8_9BRAD (Uncharacterized protein n=4 Tax=Bradyrhizobium TaxID=374 RepID=A0A0R3CET8_9BRAD)

HSP 1 Score: 58.5 bits (140), Expect = 5.090e-9
Identity = 25/39 (64.10%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 MTTEQPSLKLHLEPDNPIEVTELTGALASLARQYQNFII 117
            M   +PSL+LHLEPD PIE++ELTGALA++ARQYQ + +
Sbjct:    1 MAVAEPSLQLHLEPDEPIEISELTGALAAIARQYQAYAV 39
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BLAST of mRNA_P-wetherbeei_contig15045.1.1 vs. uniprot
Match: UPI00037B8467 (hypothetical protein n=1 Tax=Bradyrhizobium sp. WSM2793 TaxID=1038866 RepID=UPI00037B8467)

HSP 1 Score: 53.5 bits (127), Expect = 3.720e-8
Identity = 22/39 (56.41%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    1 MTTEQPSLKLHLEPDNPIEVTELTGALASLARQYQNFII 117
            M   +PSL+ +LEP+ PIE++ELTGALA++ARQYQ + +
Sbjct:    1 MVLAEPSLQFYLEPEEPIEISELTGALAAIARQYQTYAV 39
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BLAST of mRNA_P-wetherbeei_contig15045.1.1 vs. uniprot
Match: A0A6G8U2S5_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium sp. 1(2017) TaxID=1404888 RepID=A0A6G8U2S5_9BRAD)

HSP 1 Score: 53.5 bits (127), Expect = 3.320e-7
Identity = 22/39 (56.41%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 MTTEQPSLKLHLEPDNPIEVTELTGALASLARQYQNFII 117
            M   +PSL+LHLEP+ PIE++ELTGAL ++A QYQ + +
Sbjct:    1 MAAAEPSLQLHLEPEEPIEISELTGALTAIAHQYQAYAV 39
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BLAST of mRNA_P-wetherbeei_contig15045.1.1 vs. uniprot
Match: A0A7Y9RQJ7_9BRAD (Uncharacterized protein n=5 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=A0A7Y9RQJ7_9BRAD)

HSP 1 Score: 53.5 bits (127), Expect = 3.320e-7
Identity = 22/39 (56.41%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    1 MTTEQPSLKLHLEPDNPIEVTELTGALASLARQYQNFII 117
            M   +PSL+ +LEP+ PIE++ELTGALA++ARQYQ + +
Sbjct:    1 MVLAEPSLQFYLEPEEPIEISELTGALAAIARQYQTYAV 39
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15045.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A0R3CET8_9BRAD5.090e-964.10Uncharacterized protein n=4 Tax=Bradyrhizobium Tax... [more]
UPI00037B84673.720e-856.41hypothetical protein n=1 Tax=Bradyrhizobium sp. WS... [more]
A0A6G8U2S5_9BRAD3.320e-756.41Uncharacterized protein n=1 Tax=Bradyrhizobium sp.... [more]
A0A7Y9RQJ7_9BRAD3.320e-756.41Uncharacterized protein n=5 Tax=unclassified Brady... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15045contigP-wetherbeei_contig15045:1..117 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size117
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size117
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186042.723612-CDS-P-wetherbeei_contig15045:0..1171683186042.723612-CDS-P-wetherbeei_contig15045:0..117Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15045 1..117 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15045.1.1prot_P-wetherbeei_contig15045.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15045 1..117 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15045.1.1

>prot_P-wetherbeei_contig15045.1.1 ID=prot_P-wetherbeei_contig15045.1.1|Name=mRNA_P-wetherbeei_contig15045.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=39bp
MTTEQPSLKLHLEPDNPIEVTELTGALASLARQYQNFII
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mRNA from alignment at P-wetherbeei_contig15045:1..117-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15045.1.1 ID=mRNA_P-wetherbeei_contig15045.1.1|Name=mRNA_P-wetherbeei_contig15045.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=117bp|location=Sequence derived from alignment at P-wetherbeei_contig15045:1..117- (Phaeothamnion wetherbeei SAG_119_79)
ATGACAACCGAACAGCCGTCTTTAAAGCTCCATCTAGAGCCAGATAACCC
GATTGAAGTTACCGAACTGACTGGCGCGCTCGCTTCGTTGGCGCGCCAGT
ACCAAAATTTTATCATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15045:1..117-

>mRNA_P-wetherbeei_contig15045.1.1 ID=mRNA_P-wetherbeei_contig15045.1.1|Name=mRNA_P-wetherbeei_contig15045.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=117bp|location=Sequence derived from alignment at P-wetherbeei_contig15045:1..117- (Phaeothamnion wetherbeei SAG_119_79)
ATGACAACCGAACAGCCGTCTTTAAAGCTCCATCTAGAGCCAGATAACCC
GATTGAAGTTACCGAACTGACTGGCGCGCTCGCTTCGTTGGCGCGCCAGT
ACCAAAATTTTATCATC
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