mRNA_P-wetherbeei_contig15044.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15044.2.1
Unique NamemRNA_P-wetherbeei_contig15044.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15044.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15044contigP-wetherbeei_contig15044:2..1354 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1079
Hectar predicted targeting categoryother localisation
Exons2
Cds size582
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186042.6216152-UTR-P-wetherbeei_contig15044:1..4861683186042.6216152-UTR-P-wetherbeei_contig15044:1..486Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15044 2..486 +
1683186042.6513534-UTR-P-wetherbeei_contig15044:1342..13541683186042.6513534-UTR-P-wetherbeei_contig15044:1342..1354Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15044 1343..1354 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186042.631761-CDS-P-wetherbeei_contig15044:486..9941683186042.631761-CDS-P-wetherbeei_contig15044:486..994Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15044 487..994 +
1683186042.6415424-CDS-P-wetherbeei_contig15044:1268..13421683186042.6415424-CDS-P-wetherbeei_contig15044:1268..1342Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15044 1269..1342 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15044.2.1prot_P-wetherbeei_contig15044.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15044 487..1342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15044.2.1

>prot_P-wetherbeei_contig15044.2.1 ID=prot_P-wetherbeei_contig15044.2.1|Name=mRNA_P-wetherbeei_contig15044.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=194bp
MYIWQAAAGLEAKGWELLDELFPPGQSSWDVNDATDSFVIGREGTPNRCA
GGAWIGGQEFASMEEAKSTIDALLKAHHSPCTEAQLNLARGEAKGMAKCE
RFGHRQVRAARSRSASGNSSDEESPEVNSDGGSSTSSRSSRTASGAATAS
KKLGCTFQINVNRHVADCEGTVGARVTWHAFTITTNAGVWTRY*
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mRNA from alignment at P-wetherbeei_contig15044:2..1354+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15044.2.1 ID=mRNA_P-wetherbeei_contig15044.2.1|Name=mRNA_P-wetherbeei_contig15044.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1353bp|location=Sequence derived from alignment at P-wetherbeei_contig15044:2..1354+ (Phaeothamnion wetherbeei SAG_119_79)
AATTGTTGGCCAATTACTAATTGCCAGAACTAATTGTAATTGTCCGGGCT
GTGGAATTCTTCAATCCTATCCCTGGCGAGACGGAACTCTATGGGACGCT
TCCCTCAAAAGCAATGTACTGTAATGATCAAACGTGTGCTTTTCCTTACT
CTGCCATTTAATGTTGCTGTCAGGAGGACAGTCTTATCGCTCATGGCGTC
GCCTGAGCCCGCGGAGCGCTCAGTATCATTCGCACGCCCTGGTGTGATGG
AGTTTGAGCGGGGTGCCCCCCCAAGGGACTTTGAGGTCCTTTTCCCCGGA
GGACAGGCGGATGCTCTTCAGGGCGCAGGCTGAGGTGAAAGAGGGTGGGG
GCGCAGCCATCAGGGACTCGCCGGAGCCATCGGAAAGAAACATTGCCATC
TTATTTTCGGGAAATTTGTATCCAACTTCCTCAAACAGACATGGGTGCTT
TTTCTGCAATCTATTCTTAATGTGTCCTAGCATCCATGTATATATGGCAG
GCCGCTGCGGGGCTCGAGGCGAAGGGGTGGGAGCTGCTGGACGAGTTGTT
TCCGCCAGGACAAAGCTCGTGGGACGTGAATGACGCCACCGACTCCTTTG
TCATTGGCAGGGAGGGTACCCCCAATCGATGTGCTGGGGGCGCTTGGATT
GGTGGACAGGAGTTCGCGTCCATGGAGGAGGCGAAGAGCACAATCGACGC
GCTTCTCAAAGCGCACCATTCCCCGTGTACCGAGGCACAATTAAATCTCG
CGAGGGGAGAAGCAAAGGGGATGGCCAAGTGCGAGCGCTTCGGTCATCGT
CAAGTCCGGGCGGCGCGCTCGCGCTCTGCATCTGGCAATTCTTCAGACGA
AGAGAGCCCTGAAGTCAACTCGGACGGCGGTTCCAGCACCTCTTCGCGGT
CTTCACGAACAGCATCCGGCGCTGCTACGGCCAGCAAGAAGCTCGGCTGC
ACCTTCCAGATCAATGTCAACAGGCACGTTGCGGACTGTGAAGGTGAGCA
ATTTTGGCGTCGGCAACTGCTATTTATTTCCTATTGAATGTAGGCAGCTT
CAGTCGCAATGTTTTACTAGGTGCGTTCCTTTGTTGCAGTGAATAAAGGT
TCTTCTCTTCCAGTGGTTAGCATGATACTTGAAAATCGGCTTCGGCTGCC
AGGAATCCTCACTGTTGCTCCCTCCTTCAAAACCTACACGACTTGCGGTG
TCCAATGTTTCTCTACCTTCCTGCTTGCTGCCTTACCCGCTATGTCCTCT
TTCGTGCTCGTCTGCAGGGACGGTCGGCGCAAGGGTGACGTGGCATGCGT
TTACCATAACCACGAATGCCGGCGTTTGGACCAGATACTAATTTCGGCGG
CTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15044:2..1354+

>mRNA_P-wetherbeei_contig15044.2.1 ID=mRNA_P-wetherbeei_contig15044.2.1|Name=mRNA_P-wetherbeei_contig15044.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=582bp|location=Sequence derived from alignment at P-wetherbeei_contig15044:2..1354+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTATATATGGCAGGCCGCTGCGGGGCTCGAGGCGAAGGGGTGGGAGCT
GCTGGACGAGTTGTTTCCGCCAGGACAAAGCTCGTGGGACGTGAATGACG
CCACCGACTCCTTTGTCATTGGCAGGGAGGGTACCCCCAATCGATGTGCT
GGGGGCGCTTGGATTGGTGGACAGGAGTTCGCGTCCATGGAGGAGGCGAA
GAGCACAATCGACGCGCTTCTCAAAGCGCACCATTCCCCGTGTACCGAGG
CACAATTAAATCTCGCGAGGGGAGAAGCAAAGGGGATGGCCAAGTGCGAG
CGCTTCGGTCATCGTCAAGTCCGGGCGGCGCGCTCGCGCTCTGCATCTGG
CAATTCTTCAGACGAAGAGAGCCCTGAAGTCAACTCGGACGGCGGTTCCA
GCACCTCTTCGCGGTCTTCACGAACAGCATCCGGCGCTGCTACGGCCAGC
AAGAAGCTCGGCTGCACCTTCCAGATCAATGTCAACAGGCACGTTGCGGA
CTGTGAAGGGACGGTCGGCGCAAGGGTGACGTGGCATGCGTTTACCATAA
CCACGAATGCCGGCGTTTGGACCAGATACTAA
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