mRNA_P-wetherbeei_contig15042.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15042.1.1
Unique NamemRNA_P-wetherbeei_contig15042.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15042.1.1 vs. uniprot
Match: A0A6H5KEN7_9PHAE (AB hydrolase-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEN7_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 3.540e-13
Identity = 41/85 (48.24%), Postives = 51/85 (60.00%), Query Frame = 1
Query:    7 VQMTHDIRLREYSPGYLSEAAVLQTLRDIRSPTLLISGADGMPMPG----AFEERRAAMADRLTQLTLPGSHHLHLDADTAAAVA 249
            VQ T+D+RLR  SP +L+E +VL  L+ I S  L+I G  GM         F  R+ A  +RL  L LPGSHHLHLD +TA  VA
Sbjct:  137 VQFTNDVRLRSSSPSHLTEESVLMYLKAIESECLMIRGETGMLANADGVAEFVARKEACGERLRDLVLPGSHHLHLDDETAPLVA 221          
BLAST of mRNA_P-wetherbeei_contig15042.1.1 vs. uniprot
Match: A0A4D9D369_9STRA (AB hydrolase-1 domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D369_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 2.690e-9
Identity = 36/78 (46.15%), Postives = 44/78 (56.41%), Query Frame = 1
Query:    7 VQMTHDIRLREYSPGYLSEAAVLQTLRDIRSPTLLISGADGMPMPGAFEE--RRAAMADRLTQLTLPGSHHLHLDADT 234
            V+  HD RL   +  YL+E      L   R P LL+ G +G P     EE  R AA+  RLT L++PGSHHLHLDA T
Sbjct:  375 VRFRHDQRLAASAHIYLTEEQSRAFLMASRCPVLLLRGEEGWPAASPEEEILREAALGPRLTVLSVPGSHHLHLDAST 452          
BLAST of mRNA_P-wetherbeei_contig15042.1.1 vs. uniprot
Match: A0A6L7N989_9GAMM (Alpha/beta hydrolase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L7N989_9GAMM)

HSP 1 Score: 57.0 bits (136), Expect = 1.310e-7
Identity = 29/75 (38.67%), Postives = 43/75 (57.33%), Query Frame = 1
Query:    1 GPVQMTHDIRLREYSPGYLSEAAVLQTLRDIRSPTLLISGADGMPMPGAFEERRAAMADRLTQLTLPGSHHLHLD 225
            G +++  D RLR  S  YL+EAAV++ +R + +PTL+I    G  +      +R A      +  LPG+HHLHLD
Sbjct:  200 GEIRLHTDRRLRNPSAMYLTEAAVMEFVRGVEAPTLVILADQGTIIDRDVTHQRIAALGNAEKAVLPGNHHLHLD 274          
BLAST of mRNA_P-wetherbeei_contig15042.1.1 vs. uniprot
Match: UPI00140330D0 (alpha/beta hydrolase n=2 Tax=Marinobacter TaxID=2742 RepID=UPI00140330D0)

HSP 1 Score: 56.2 bits (134), Expect = 2.600e-7
Identity = 32/79 (40.51%), Postives = 43/79 (54.43%), Query Frame = 1
Query:    1 GPVQMTHDIRLREYSPGYLSEAAVLQTLRDIRSPTLLISGADGMPMPGAFEERRAAMADRLTQLTLPGSHHLHLDADTA 237
            G  +   D RLR  SPG L EA V   L+ I +PTLL+    G+       ++R+ +   L  +T+PGSHH HLD D A
Sbjct:  220 GGFRWRTDARLRFPSPGRLDEAQVHAFLQAIEAPTLLLRAESGLLGGREKWQQRSQLIRNLQDVTVPGSHHCHLDGDVA 298          
BLAST of mRNA_P-wetherbeei_contig15042.1.1 vs. uniprot
Match: UPI001E4EEA7E (alpha/beta hydrolase n=1 Tax=Motilimonas eburnea TaxID=1737488 RepID=UPI001E4EEA7E)

HSP 1 Score: 55.5 bits (132), Expect = 4.180e-7
Identity = 28/69 (40.58%), Postives = 41/69 (59.42%), Query Frame = 1
Query:   16 THDIRLREYSPGYLSEAAVLQTLRDIRSPTLLISGADGMPMPGAFEERRAAMADRLTQLTLPGSHHLHL 222
            +HD +L   SP   +E    Q ++DI+ PTL++ G  G         +R+++  RLTQLTL G+HHLHL
Sbjct:  179 SHDAKLTWLSPVRFAEQQAQQIIKDIQCPTLVLLGKQGYDQIKQQLTQRSSLFHRLTQLTLTGNHHLHL 247          
BLAST of mRNA_P-wetherbeei_contig15042.1.1 vs. uniprot
Match: A0A1Y6CDU9_9PROT (Pimeloyl-ACP methyl ester carboxylesterase n=1 Tax=Pseudobacteriovorax antillogorgiicola TaxID=1513793 RepID=A0A1Y6CDU9_9PROT)

HSP 1 Score: 55.1 bits (131), Expect = 6.260e-7
Identity = 29/73 (39.73%), Postives = 40/73 (54.79%), Query Frame = 1
Query:    7 VQMTHDIRLREYSPGYLSEAAVLQTLRDIRSPTLLISGADGMPMPGAFEERRAAMADRLTQLTLPGSHHLHLD 225
            +Q THD RL+  S    SE  V   L+ I  PTL I G +      A  E+R  M  +L+Q+T+ G HHLH++
Sbjct:  194 IQWTHDPRLKLPSARLYSEPQVQAYLKSIECPTLFIRGNNTFLSNAALVEQRLEMVKQLSQITVSGGHHLHME 266          
BLAST of mRNA_P-wetherbeei_contig15042.1.1 vs. uniprot
Match: A0A840QBU8_9PSEU (Pimeloyl-ACP methyl ester carboxylesterase n=2 Tax=Saccharopolyspora phatthalungensis TaxID=664693 RepID=A0A840QBU8_9PSEU)

HSP 1 Score: 53.1 bits (126), Expect = 3.010e-6
Identity = 33/82 (40.24%), Postives = 46/82 (56.10%), Query Frame = 1
Query:    1 GPVQMTHDIRLREYSPGYLSEAAVLQTLRDIRSPTLLISGADGMPMPGAFEERRAAMADRLTQLTLPGSHHLHLD-ADTAAA 243
            G     HD+RL+  +   LSE  +L+ LR+I++PTLL+  A    +   F  RR      LTQ+T  G HHLH++ AD  AA
Sbjct:  188 GGYSWRHDVRLKYPTVLALSEEEILEFLRNIKAPTLLVKAAR-TALREEFYPRRIDSVPDLTQVTFAGGHHLHMENADPVAA 268          
BLAST of mRNA_P-wetherbeei_contig15042.1.1 vs. uniprot
Match: A0A2E5MRP1_9ALTE (Alpha/beta hydrolase n=1 Tax=Alteromonadaceae bacterium TaxID=1916082 RepID=A0A2E5MRP1_9ALTE)

HSP 1 Score: 50.8 bits (120), Expect = 2.150e-5
Identity = 28/70 (40.00%), Postives = 36/70 (51.43%), Query Frame = 1
Query:   22 DIRLREYSPGYLSEAAVLQTLRDIRSPTLLISGADGMPMPGAFEERRAAMADRLTQLTLPGSHHLHLDAD 231
            D RLR  S     EA V   LR I +P L +  ADG+    +    R  +   LT++T+PG HH HLD D
Sbjct:  224 DARLRHPSLSRFDEAQVTGFLRAIEAPVLFVRAADGLLGGRSSWLERTGLIRDLTEVTVPGGHHCHLDGD 293          
BLAST of mRNA_P-wetherbeei_contig15042.1.1 vs. uniprot
Match: A0A1E7FVE5_9STRA (Alpha/beta-hydrolase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FVE5_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 3.050e-5
Identity = 29/76 (38.16%), Postives = 38/76 (50.00%), Query Frame = 1
Query:   19 HDIRLREYSPGYLSEAAVLQTLRDIRSPTLLISGADGMPMPGAFEERRAAMADRLTQLTLPGSHHLHLDADTAAAV 246
            HD RL   S  YLS   +   ++++ +P  ++S  DG P      +R           TLPGSHHLH D DTA AV
Sbjct:  260 HDTRLLWPSLQYLSSDQIDYIMKEVEAPVCILSADDGYPFEKDRIDRAIQNLKPKMYKTLPGSHHLHADPDTADAV 335          
BLAST of mRNA_P-wetherbeei_contig15042.1.1 vs. uniprot
Match: A0A2D4RY64_9DELT (Alpha/beta hydrolase n=5 Tax=Proteobacteria TaxID=1224 RepID=A0A2D4RY64_9DELT)

HSP 1 Score: 50.1 bits (118), Expect = 3.950e-5
Identity = 31/76 (40.79%), Postives = 39/76 (51.32%), Query Frame = 1
Query:    7 VQMTHDIRLREYSPGYLSEAAVLQTLRDIRSPTLLISGADGMPMPGAFEERRAAMADRLTQLT---LPGSHHLHLD 225
            V    D RLR  S  Y SE  +L+ L+ IR PTLLI G         +++R  A  + +  L    LPG HHLHLD
Sbjct:  199 VTWASDSRLRVGSRTYFSEEQILEFLKQIRCPTLLIRGDFYFQENPDWQQRMRARCEYVPDLQDVLLPGGHHLHLD 274          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15042.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5KEN7_9PHAE3.540e-1348.24AB hydrolase-1 domain-containing protein n=1 Tax=E... [more]
A0A4D9D369_9STRA2.690e-946.15AB hydrolase-1 domain-containing protein n=3 Tax=M... [more]
A0A6L7N989_9GAMM1.310e-738.67Alpha/beta hydrolase n=1 Tax=Gammaproteobacteria b... [more]
UPI00140330D02.600e-740.51alpha/beta hydrolase n=2 Tax=Marinobacter TaxID=27... [more]
UPI001E4EEA7E4.180e-740.58alpha/beta hydrolase n=1 Tax=Motilimonas eburnea T... [more]
A0A1Y6CDU9_9PROT6.260e-739.73Pimeloyl-ACP methyl ester carboxylesterase n=1 Tax... [more]
A0A840QBU8_9PSEU3.010e-640.24Pimeloyl-ACP methyl ester carboxylesterase n=2 Tax... [more]
A0A2E5MRP1_9ALTE2.150e-540.00Alpha/beta hydrolase n=1 Tax=Alteromonadaceae bact... [more]
A0A1E7FVE5_9STRA3.050e-538.16Alpha/beta-hydrolase n=1 Tax=Fragilariopsis cylind... [more]
A0A2D4RY64_9DELT3.950e-540.79Alpha/beta hydrolase n=5 Tax=Proteobacteria TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15042contigP-wetherbeei_contig15042:1339..1596 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1122951.ATUE01000006_gene1416
PFAMsAbhydrolase_1,Abhydrolase_6
Model size258
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.04e-11
EggNOG OGsCOG0596@1|root,COG0596@2|Bacteria,1QTWQ@1224|Proteobacteria,1T1JQ@1236|Gammaproteobacteria
DescriptionAlpha beta hydrolase
Cds size246
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186042.5306778-CDS-P-wetherbeei_contig15042:1338..15841683186042.5306778-CDS-P-wetherbeei_contig15042:1338..1584Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15042 1339..1584 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186042.549171-UTR-P-wetherbeei_contig15042:1584..15961683186042.549171-UTR-P-wetherbeei_contig15042:1584..1596Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15042 1585..1596 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15042.1.1prot_P-wetherbeei_contig15042.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15042 1339..1584 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15042.1.1

>prot_P-wetherbeei_contig15042.1.1 ID=prot_P-wetherbeei_contig15042.1.1|Name=mRNA_P-wetherbeei_contig15042.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=82bp
MTHDIRLREYSPGYLSEAAVLQTLRDIRSPTLLISGADGMPMPGAFEERR
AAMADRLTQLTLPGSHHLHLDADTAAAVAAAV
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mRNA from alignment at P-wetherbeei_contig15042:1339..1596-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15042.1.1 ID=mRNA_P-wetherbeei_contig15042.1.1|Name=mRNA_P-wetherbeei_contig15042.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=258bp|location=Sequence derived from alignment at P-wetherbeei_contig15042:1339..1596- (Phaeothamnion wetherbeei SAG_119_79)
GGCCCCGTGCAAATGACGCACGACATTCGGCTCCGCGAATACAGTCCCGG CTACCTGAGCGAAGCGGCGGTGTTGCAGACGCTGCGCGACATCCGCAGCC CGACGCTGCTCATCAGCGGCGCCGACGGGATGCCGATGCCAGGCGCCTTC GAAGAGCGGCGGGCGGCGATGGCTGACCGGCTGACACAGTTAACGCTGCC GGGATCGCATCACCTGCATCTGGACGCGGACACGGCGGCCGCCGTCGCCG CCGCCGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15042:1339..1596-

>mRNA_P-wetherbeei_contig15042.1.1 ID=mRNA_P-wetherbeei_contig15042.1.1|Name=mRNA_P-wetherbeei_contig15042.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=246bp|location=Sequence derived from alignment at P-wetherbeei_contig15042:1339..1596- (Phaeothamnion wetherbeei SAG_119_79)
ATGACGCACGACATTCGGCTCCGCGAATACAGTCCCGGCTACCTGAGCGA
AGCGGCGGTGTTGCAGACGCTGCGCGACATCCGCAGCCCGACGCTGCTCA
TCAGCGGCGCCGACGGGATGCCGATGCCAGGCGCCTTCGAAGAGCGGCGG
GCGGCGATGGCTGACCGGCTGACACAGTTAACGCTGCCGGGATCGCATCA
CCTGCATCTGGACGCGGACACGGCGGCCGCCGTCGCCGCCGCCGTG
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