mRNA_P-wetherbeei_contig1504.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1504.4.1
Unique NamemRNA_P-wetherbeei_contig1504.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1504.4.1 vs. uniprot
Match: D7G2M4_ECTSI (Eukaryotic translation initiation factor 1-SUI1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2M4_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 1.560e-19
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:  295 DPFADATEEQRDNSKVHVRVQQRSGRKCITTVQGLQDDLDLKRILKAFKKNF 450
            DPFAD+ EE+RD +KVHVRVQQRSGRKCITTVQGL DDLDLKRILKAFKKNF
Sbjct:   11 DPFADSQEERRDQTKVHVRVQQRSGRKCITTVQGLADDLDLKRILKAFKKNF 62
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BLAST of mRNA_P-wetherbeei_contig1504.4.1 vs. uniprot
Match: A0A7S2RZ37_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RZ37_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.340e-17
Identity = 42/52 (80.77%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:  295 DPFADATEEQRDNSKVHVRVQQRSGRKCITTVQGLQDDLDLKRILKAFKKNF 450
            D FADA +EQ DNSK+H+RVQQR+GRKCITTVQGL DDLD+KRI KAFKKNF
Sbjct:   33 DAFADADDEQGDNSKIHIRVQQRNGRKCITTVQGLADDLDIKRICKAFKKNF 84
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BLAST of mRNA_P-wetherbeei_contig1504.4.1 vs. uniprot
Match: A0A7S2Y0G0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0G0_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 8.370e-17
Identity = 53/109 (48.62%), Postives = 66/109 (60.55%), Query Frame = 1 
Query:  295 DPFADATEEQRDNSKVHVRVQQRSGRKCITTVQGLQDDLDLKRILKAFKKNFRSVSVRLLGKKGVHHSPPGADFLNDSLFLR*D*TFDVPYFS*CRGLI---KCVIFGF 612
            D FADA EE  D SKVHVRVQQR+GRKCIT ++GLQDDLDLK+ILKAFKKNF            + H     D + D + L  D   +V  F   + +I   +C++ GF
Sbjct:   11 DFFADAKEETEDKSKVHVRVQQRNGRKCITLIEGLQDDLDLKKILKAFKKNFSCNGA-------ITHD----DEVGDVIQLSGDQRTNVKEFLEDQEIINQGQCILHGF 108
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BLAST of mRNA_P-wetherbeei_contig1504.4.1 vs. uniprot
Match: F0XYX0_AURAN (SUI1 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYX0_AURAN)

HSP 1 Score: 84.0 bits (206), Expect = 6.290e-16
Identity = 41/53 (77.36%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:  295 DPFADATEEQRDNSKVHVRVQQRSGRKCITTVQGLQDDLDLKRILKAFKKNFR 453
            D F DA EE  D SKVH+RVQQR+GRKCITTVQGL DDLD+KRI KAFKKNF+
Sbjct:   16 DAFKDADEEAGDQSKVHIRVQQRNGRKCITTVQGLADDLDIKRICKAFKKNFQ 68
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BLAST of mRNA_P-wetherbeei_contig1504.4.1 vs. uniprot
Match: A0A7S3NQ48_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NQ48_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 3.680e-15
Identity = 32/45 (71.11%), Postives = 42/45 (93.33%), Query Frame = 2 
Query:  878 CNGAIVKDAEVGEVVQLSGDQRTNINEFLIDQQICAAGQIVLHGF 1012
            CNGA+ KD+E+GE++QLSGDQRTN+NEFL+DQ+IC  GQ+V+HGF
Sbjct:   65 CNGAVTKDSELGEIIQLSGDQRTNVNEFLVDQEICTKGQLVIHGF 109
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BLAST of mRNA_P-wetherbeei_contig1504.4.1 vs. uniprot
Match: G4YNQ4_PHYSP (SUI1 domain-containing protein n=20 Tax=Oomycota TaxID=4762 RepID=G4YNQ4_PHYSP)

HSP 1 Score: 80.5 bits (197), Expect = 9.380e-15
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 2 
Query:  875 SCNGAIVKDAEVGEVVQLSGDQRTNINEFLIDQQICAAGQIVLHGF 1012
            SCNGAIVKD E+GE++QLSGDQRTNI EFL+DQ+IC+  Q+VLHGF
Sbjct:   64 SCNGAIVKDDELGEIIQLSGDQRTNIREFLLDQEICSDSQVVLHGF 109
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BLAST of mRNA_P-wetherbeei_contig1504.4.1 vs. uniprot
Match: K3WHU3_GLOUD (SUI1 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WHU3_GLOUD)

HSP 1 Score: 80.5 bits (197), Expect = 9.380e-15
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 2 
Query:  875 SCNGAIVKDAEVGEVVQLSGDQRTNINEFLIDQQICAAGQIVLHGF 1012
            SCNGA+VKD E+GE++QLSGDQRTNI EFLIDQ+IC+  Q+VLHGF
Sbjct:   64 SCNGALVKDEELGEIIQLSGDQRTNIREFLIDQEICSDSQLVLHGF 109
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BLAST of mRNA_P-wetherbeei_contig1504.4.1 vs. uniprot
Match: M4BMF9_HYAAE (SUI1 domain-containing protein n=6 Tax=Peronosporaceae TaxID=4777 RepID=M4BMF9_HYAAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.850e-14
Identity = 35/46 (76.09%), Postives = 41/46 (89.13%), Query Frame = 2 
Query:  875 SCNGAIVKDAEVGEVVQLSGDQRTNINEFLIDQQICAAGQIVLHGF 1012
            SCNGAIVKD E+GE++QLSGDQRTNI EFL+DQ+IC   Q+VLHGF
Sbjct:   66 SCNGAIVKDDELGEIIQLSGDQRTNIREFLLDQEICMDAQVVLHGF 111
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BLAST of mRNA_P-wetherbeei_contig1504.4.1 vs. uniprot
Match: A0A6V1L604_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1L604_HETAK)

HSP 1 Score: 79.0 bits (193), Expect = 3.270e-14
Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:  295 DPFADATEEQRDNSKVHVRVQQRSGRKCITTVQGLQDDLDLKRILKAFKKNF 450
            D FADA++E  D SKVHVRVQQR+GRKCI+ ++GL DDLDLK+ILKA KKNF
Sbjct:   11 DAFADASDETVDRSKVHVRVQQRNGRKCISLIEGLADDLDLKKILKAMKKNF 62
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BLAST of mRNA_P-wetherbeei_contig1504.4.1 vs. uniprot
Match: A0A7S4A8F8_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A8F8_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 7.000e-14
Identity = 39/49 (79.59%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:  307 DATEEQRDNSKVHVRVQQRSGRKCITTVQGLQDDLDLKRILKAFKKNFR 453
            DA E+Q D SKVH+RVQQR+GRKCITTVQGL DDLD+KRI KAFKKNF+
Sbjct:   83 DADEKQGDQSKVHIRVQQRNGRKCITTVQGLADDLDVKRICKAFKKNFQ 131
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1504.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2M4_ECTSI1.560e-1988.46Eukaryotic translation initiation factor 1-SUI1 n=... [more]
A0A7S2RZ37_9STRA2.340e-1780.77Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2Y0G0_9STRA8.370e-1748.62Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
F0XYX0_AURAN6.290e-1677.36SUI1 domain-containing protein n=1 Tax=Aureococcus... [more]
A0A7S3NQ48_9STRA3.680e-1571.11Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
G4YNQ4_PHYSP9.380e-1576.09SUI1 domain-containing protein n=20 Tax=Oomycota T... [more]
K3WHU3_GLOUD9.380e-1576.09SUI1 domain-containing protein n=1 Tax=Globisporan... [more]
M4BMF9_HYAAE1.850e-1476.09SUI1 domain-containing protein n=6 Tax=Peronospora... [more]
A0A6V1L604_HETAK3.270e-1473.08Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4A8F8_9STRA7.000e-1479.59Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1504contigP-wetherbeei_contig1504:4020..5548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog42099.EPrPV00000019804
PFAMsSUI1
Model size1529
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.4e-18
EggNOG OGsCOG0023@1|root,KOG1770@2759|Eukaryota,1MH9M@121069|Pythiales
DescriptionEukaryotic translation initiation factor 1b. Source PGD
Cds size393
COG categoryJ
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186042.3230884-UTR-P-wetherbeei_contig1504:4019..46411683186042.3230884-UTR-P-wetherbeei_contig1504:4019..4641Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1504 4020..4641 +
1683186042.3587873-UTR-P-wetherbeei_contig1504:5034..55481683186042.3587873-UTR-P-wetherbeei_contig1504:5034..5548Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1504 5035..5548 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186042.3389497-CDS-P-wetherbeei_contig1504:4641..50341683186042.3389497-CDS-P-wetherbeei_contig1504:4641..5034Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1504 4642..5034 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1504.4.1prot_P-wetherbeei_contig1504.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1504 4642..5034 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1504.4.1

>prot_P-wetherbeei_contig1504.4.1 ID=prot_P-wetherbeei_contig1504.4.1|Name=mRNA_P-wetherbeei_contig1504.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=131bp
MPRRHRRLDKSPFVRYIDLHDEGSGPSAFPQLYTTIARAAKAVTAVVVCA
DPTAPSLSERPESRSFCCVDVPAVPTRHDNMAPSSCNGAIVKDAEVGEVV
QLSGDQRTNINEFLIDQQICAAGQIVLHGF*
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mRNA from alignment at P-wetherbeei_contig1504:4020..5548+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1504.4.1 ID=mRNA_P-wetherbeei_contig1504.4.1|Name=mRNA_P-wetherbeei_contig1504.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1529bp|location=Sequence derived from alignment at P-wetherbeei_contig1504:4020..5548+ (Phaeothamnion wetherbeei SAG_119_79)
GCCTCCGCAGAGCAGCTGCTTCCGCATTTCTTTGCATACGAGCACGCCTT
CCACATGGGCGACAGCATCCAGAACTTGTCCTCTTTTGGTGAGCTCTCTC
TTCCCCGCGTTCTCTCGGTTCTCCTTTTCTTTTTGGCGGAGGCAGCATTC
CAAACCTAGCCCGCTACTGGAGCAAAGCCATATGTTCCTCTCTTTGTTGC
CACCTACTGTTCCCGTTGCTAGCTTTCATTCGTTGTACAACTTTCTCGCC
CCTCGTCCGGCTCTCTTGTCACTTCTCCTCGCTGCTCGCACTCAGACCCG
TTCGCGGATGCCACTGAGGAGCAGCGCGACAACAGCAAGGTGCACGTCCG
TGTACAGCAGCGAAGCGGCCGCAAGTGCATCACAACAGTTCAGGGCCTCC
AGGACGACCTCGATTTGAAGCGCATTCTAAAGGCCTTCAAGAAGAACTTT
AGGTCAGTTTCGGTGAGGCTATTGGGGAAAAAAGGCGTGCATCACAGTCC
TCCTGGAGCTGATTTTCTCAATGACAGTTTGTTCTTGCGATAAGATTGAA
CCTTTGATGTCCCATATTTCTCTTAATGTCGTGGCTTAATTAAGTGTGTA
ATTTTTGGCTTTTTCTGTCCAGATGCCGCGGCGTCATAGGCGTCTGGACA
AAAGTCCTTTCGTTCGTTACATTGACTTGCACGATGAAGGAAGCGGCCCC
AGCGCTTTCCCACAACTTTATACAACCATTGCGCGAGCCGCCAAGGCAGT
AACAGCAGTTGTGGTTTGTGCAGATCCTACCGCTCCGTCTCTCTCCGAAC
GCCCCGAATCCCGCTCCTTCTGCTGCGTTGACGTGCCCGCCGTCCCAACG
CGGCACGATAATATGGCGCCAAGCAGCTGCAACGGCGCCATCGTGAAGGA
CGCCGAGGTCGGCGAGGTGGTGCAGCTGTCGGGCGACCAGCGCACCAACA
TTAACGAGTTCCTCATCGACCAGCAGATCTGCGCCGCCGGCCAGATCGTC
CTGCACGGTTTTTGAGCACGTTCCGCTTCTTTTCGGCGAACGGAACTTAT
GGCGACGGCGAAGGCTGCGGCGGAGGTGGGAGCAGCGTCTTTGGCGGCGG
GAGCCAGCTCGTCTCTTCACAGCGCTGATGGCGGCAACGGGGGGCAGTGG
AGACTGGGGCGAGGCCTCGGCACCGGCGCTCGTATTGTGGCTAGAGCGAA
GATGGCGGCGCCGGCGGCGGCGCCGGCGGCGGCTTCATTCTGCTCAGCAG
CATTAACAGCGGGGGCAGCAGCTACTGCAGTAGGAGGGGAAGCGGCTCCA
GCAGAAGCAGCAGGAGCCGCAATAGGCGATCGGGCGCATCGCGTTGAGGT
ATGCTATGCTACGCGAATGAGAAACAATGGGGGGAACAAAGAGGAGGGGA
GAAGCATCCAGCAAAAACTGGGTAATGGCGGTGGAGCGCGGTCGTATTGG
CGCGCCGAGCTTGGCACTCGCACGCAAAAGTGGCTGATGCTCAGCCGACC
GCAGCGCAAATGAATATATCTTTTCCCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1504:4020..5548+

>mRNA_P-wetherbeei_contig1504.4.1 ID=mRNA_P-wetherbeei_contig1504.4.1|Name=mRNA_P-wetherbeei_contig1504.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=393bp|location=Sequence derived from alignment at P-wetherbeei_contig1504:4020..5548+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCGGCGTCATAGGCGTCTGGACAAAAGTCCTTTCGTTCGTTACAT
TGACTTGCACGATGAAGGAAGCGGCCCCAGCGCTTTCCCACAACTTTATA
CAACCATTGCGCGAGCCGCCAAGGCAGTAACAGCAGTTGTGGTTTGTGCA
GATCCTACCGCTCCGTCTCTCTCCGAACGCCCCGAATCCCGCTCCTTCTG
CTGCGTTGACGTGCCCGCCGTCCCAACGCGGCACGATAATATGGCGCCAA
GCAGCTGCAACGGCGCCATCGTGAAGGACGCCGAGGTCGGCGAGGTGGTG
CAGCTGTCGGGCGACCAGCGCACCAACATTAACGAGTTCCTCATCGACCA
GCAGATCTGCGCCGCCGGCCAGATCGTCCTGCACGGTTTTTGA
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