mRNA_P-wetherbeei_contig1504.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1504.2.1
Unique NamemRNA_P-wetherbeei_contig1504.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1504.2.1 vs. uniprot
Match: A0A835Z7B7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7B7_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.020e-8
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 1 
Query:    1 GGATLLQLSRADKAKVARLMQELLLARQEVQAATGRVDRLRAQNQHIVHEMSELRAKFNQSLQLLRKYQERV 216
            G A L+ L  +DKAKVA+LMQEL  A+ E  A   R++RLRAQN  IV E ++ R++  Q++ LL+KYQ R 
Sbjct:   42 GEARLVDLCPSDKAKVAKLMQELSAAQAEAAARAHRLERLRAQNAEIVAETADTRSRLTQAVLLLKKYQARA 113
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1504.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z7B7_9STRA1.020e-850.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1504contigP-wetherbeei_contig1504:1799..2014 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size216
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-05_004990.1
Cds size216
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186042.291369-CDS-P-wetherbeei_contig1504:1798..20141683186042.291369-CDS-P-wetherbeei_contig1504:1798..2014Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1504 1799..2014 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1504.2.1prot_P-wetherbeei_contig1504.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1504 1799..2014 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1504.2.1

>prot_P-wetherbeei_contig1504.2.1 ID=prot_P-wetherbeei_contig1504.2.1|Name=mRNA_P-wetherbeei_contig1504.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=72bp
GGATLLQLSRADKAKVARLMQELLLARQEVQAATGRVDRLRAQNQHIVHE
MSELRAKFNQSLQLLRKYQERV
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mRNA from alignment at P-wetherbeei_contig1504:1799..2014+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1504.2.1 ID=mRNA_P-wetherbeei_contig1504.2.1|Name=mRNA_P-wetherbeei_contig1504.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=216bp|location=Sequence derived from alignment at P-wetherbeei_contig1504:1799..2014+ (Phaeothamnion wetherbeei SAG_119_79)
GGGGGGGCGACGCTTCTCCAGCTCTCCCGGGCAGACAAGGCGAAAGTGGC
AAGGCTGATGCAGGAACTTTTGCTGGCGAGGCAGGAGGTGCAGGCTGCAA
CAGGTCGCGTTGATCGGCTTCGTGCCCAGAATCAGCACATCGTCCACGAA
ATGTCTGAACTGCGCGCCAAATTTAACCAGAGTCTCCAACTTCTGCGAAA
ATACCAAGAGCGGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1504:1799..2014+

>mRNA_P-wetherbeei_contig1504.2.1 ID=mRNA_P-wetherbeei_contig1504.2.1|Name=mRNA_P-wetherbeei_contig1504.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=216bp|location=Sequence derived from alignment at P-wetherbeei_contig1504:1799..2014+ (Phaeothamnion wetherbeei SAG_119_79)
GGGGGGGCGACGCTTCTCCAGCTCTCCCGGGCAGACAAGGCGAAAGTGGC
AAGGCTGATGCAGGAACTTTTGCTGGCGAGGCAGGAGGTGCAGGCTGCAA
CAGGTCGCGTTGATCGGCTTCGTGCCCAGAATCAGCACATCGTCCACGAA
ATGTCTGAACTGCGCGCCAAATTTAACCAGAGTCTCCAACTTCTGCGAAA
ATACCAAGAGCGGGTG
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