mRNA_P-wetherbeei_contig15026.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15026.1.1
Unique NamemRNA_P-wetherbeei_contig15026.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15026.1.1 vs. uniprot
Match: A0A835ZDL4_9STRA (Cysteine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDL4_9STRA)

HSP 1 Score: 186 bits (473), Expect = 7.010e-55
Identity = 82/105 (78.10%), Postives = 98/105 (93.33%), Query Frame = 1 
Query:    1 LFNTASREKQPLRPQSGRRVKFYSCGPTVYDAAHVGNFRAFLTYDVLKRWLLYRGYDVEHVCNLTDVDDKIIQRMQRDGVGLKELTNKYADLFFEDLAALNIIPA 315
            L+NTA+R K+PLRP SG+R+ FYSCGPTVYD AH+GNFRAFLTYDVLKRWL YRG++V+HVCNLTD+DDKII+RM RDGVGL+ELT++YA LFFEDLAALN++PA
Sbjct:   13 LYNTAARTKEPLRPLSGKRIAFYSCGPTVYDHAHIGNFRAFLTYDVLKRWLTYRGFEVDHVCNLTDIDDKIIRRMARDGVGLRELTDRYAALFFEDLAALNVVPA 117
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BLAST of mRNA_P-wetherbeei_contig15026.1.1 vs. uniprot
Match: A0A7S0CUB0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CUB0_9EUKA)

HSP 1 Score: 177 bits (448), Expect = 1.360e-53
Identity = 80/108 (74.07%), Postives = 98/108 (90.74%), Query Frame = 1 
Query:    1 LFNTASREK---QPLRPQSGRRVKFYSCGPTVYDAAHVGNFRAFLTYDVLKRWLLYRGYDVEHVCNLTDVDDKIIQRMQRDGVGLKELTNKYADLFFEDLAALNIIPA 315
            L+NTA REK   +PL P+ G++VKFYSCGPTVYD AH+GNFRAFLTYD++KRWLLY GYDV+HVCNLTD+DDKI+QRM+RD + LK+LTNKY+DLFF+DLA+LN+IPA
Sbjct:    3 LYNTAQREKIKFEPLDPE-GKKVKFYSCGPTVYDFAHIGNFRAFLTYDLIKRWLLYLGYDVDHVCNLTDIDDKILQRMKRDDISLKDLTNKYSDLFFQDLASLNVIPA 109
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BLAST of mRNA_P-wetherbeei_contig15026.1.1 vs. uniprot
Match: A0A7S3YUM7_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YUM7_9EUKA)

HSP 1 Score: 173 bits (439), Expect = 1.920e-52
Identity = 80/105 (76.19%), Postives = 90/105 (85.71%), Query Frame = 1 
Query:    1 LFNTASREKQPLRPQSGRRVKFYSCGPTVYDAAHVGNFRAFLTYDVLKRWLLYRGYDVEHVCNLTDVDDKIIQRMQRDGVGLKELTNKYADLFFEDLAALNIIPA 315
            L+NTA+REK P  P +  RV FYSCGPTVYD AHVGNFRAFLTYD+LKRWL Y GYDV+HVCNLTD+DDKII RM RD V LK+LT KY+DLFFEDLA+LNI+PA
Sbjct:   55 LYNTATREKDPFVPANPPRVTFYSCGPTVYDFAHVGNFRAFLTYDLLKRWLKYLGYDVDHVCNLTDIDDKIINRMARDNVTLKDLTTKYSDLFFEDLASLNILPA 159
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BLAST of mRNA_P-wetherbeei_contig15026.1.1 vs. uniprot
Match: D7FX39_ECTSI (Cysteine--tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX39_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 4.690e-51
Identity = 81/105 (77.14%), Postives = 91/105 (86.67%), Query Frame = 1 
Query:    1 LFNTASREKQPLRPQSGRRVKFYSCGPTVYDAAHVGNFRAFLTYDVLKRWLLYRGYDVEHVCNLTDVDDKIIQRMQRDGVGLKELTNKYADLFFEDLAALNIIPA 315
            LFNT  R K+  RPQ  RRVKFYSCGPTVYD AH+GNFRAFLTYDVLKRWLLY+G++V+HVCNLTDVDDKII RM RDGV L+ELT KYA LFF+DL +LNI+PA
Sbjct:   21 LFNTEGRTKERFRPQDRRRVKFYSCGPTVYDMAHIGNFRAFLTYDVLKRWLLYQGFEVDHVCNLTDVDDKIIARMARDGVSLEELTGKYAKLFFDDLESLNIVPA 125
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BLAST of mRNA_P-wetherbeei_contig15026.1.1 vs. uniprot
Match: L1I7X3_GUITC (Cysteine--tRNA ligase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1I7X3_GUITC)

HSP 1 Score: 170 bits (431), Expect = 3.310e-49
Identity = 77/107 (71.96%), Postives = 91/107 (85.05%), Query Frame = 1 
Query:    1 LFNTASREKQPLRP--QSGRRVKFYSCGPTVYDAAHVGNFRAFLTYDVLKRWLLYRGYDVEHVCNLTDVDDKIIQRMQRDGVGLKELTNKYADLFFEDLAALNIIPA 315
            ++NT SR+K+   P  + G+ VK Y+CGPT+YD AH+GNFRAFLTYDVLKRWLLY GYDV+H+CNLTDVDDKIIQRM+RD VGLKELT K+AD FF+DL  LNIIPA
Sbjct:   24 IYNTLSRDKETFEPMCEDGKTVKMYTCGPTIYDFAHIGNFRAFLTYDVLKRWLLYCGYDVDHICNLTDVDDKIIQRMKRDNVGLKELTEKFADAFFDDLKRLNIIPA 130
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BLAST of mRNA_P-wetherbeei_contig15026.1.1 vs. uniprot
Match: A0A7S0EPZ0_9CRYP (Cysteine--tRNA ligase (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EPZ0_9CRYP)

HSP 1 Score: 170 bits (430), Expect = 8.770e-49
Identity = 77/107 (71.96%), Postives = 91/107 (85.05%), Query Frame = 1 
Query:    1 LFNTASREKQPLRP--QSGRRVKFYSCGPTVYDAAHVGNFRAFLTYDVLKRWLLYRGYDVEHVCNLTDVDDKIIQRMQRDGVGLKELTNKYADLFFEDLAALNIIPA 315
            ++NT SR+K+   P  + GR VK Y+CGPT+YD AH+GNFRAFLTYDVLKRWLLY GY+V+H+CNLTDVDDKIIQRM+RD VGLKELT K+AD FF+DL  LNIIPA
Sbjct:   96 IYNTLSRDKETFEPMCEDGRTVKMYTCGPTIYDFAHIGNFRAFLTYDVLKRWLLYCGYEVDHICNLTDVDDKIIQRMKRDNVGLKELTEKFADAFFDDLKRLNIIPA 202
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BLAST of mRNA_P-wetherbeei_contig15026.1.1 vs. uniprot
Match: W7U426_9STRA (Cysteine--tRNA ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U426_9STRA)

HSP 1 Score: 171 bits (434), Expect = 1.650e-48
Identity = 77/105 (73.33%), Postives = 91/105 (86.67%), Query Frame = 1 
Query:    1 LFNTASREKQPLRPQSGRRVKFYSCGPTVYDAAHVGNFRAFLTYDVLKRWLLYRGYDVEHVCNLTDVDDKIIQRMQRDGVGLKELTNKYADLFFEDLAALNIIPA 315
            L+NTASR+K+P +     +V FYSCGPT+YD AH+GNFRAFLTYDVLKRWLLY GYDVEHVCNLTDVDDKII+RM RDG+ L ELT+K+A +FFEDL ALN++PA
Sbjct:   92 LYNTASRKKEPFKTGQPGKVSFYSCGPTIYDFAHIGNFRAFLTYDVLKRWLLYSGYDVEHVCNLTDVDDKIIKRMARDGLSLPELTDKFARVFFEDLQALNVLPA 196
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BLAST of mRNA_P-wetherbeei_contig15026.1.1 vs. uniprot
Match: A0A7S4UT40_GUITH (Cysteine--tRNA ligase n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4UT40_GUITH)

HSP 1 Score: 170 bits (431), Expect = 5.740e-48
Identity = 77/107 (71.96%), Postives = 91/107 (85.05%), Query Frame = 1 
Query:    1 LFNTASREKQPLRP--QSGRRVKFYSCGPTVYDAAHVGNFRAFLTYDVLKRWLLYRGYDVEHVCNLTDVDDKIIQRMQRDGVGLKELTNKYADLFFEDLAALNIIPA 315
            ++NT SR+K+   P  + G+ VK Y+CGPT+YD AH+GNFRAFLTYDVLKRWLLY GYDV+H+CNLTDVDDKIIQRM+RD VGLKELT K+AD FF+DL  LNIIPA
Sbjct:  130 IYNTLSRDKETFEPMCEDGKTVKMYTCGPTIYDFAHIGNFRAFLTYDVLKRWLLYCGYDVDHICNLTDVDDKIIQRMKRDNVGLKELTEKFADAFFDDLKRLNIIPA 236
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BLAST of mRNA_P-wetherbeei_contig15026.1.1 vs. uniprot
Match: A0A7S0Y1W6_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0Y1W6_HEMAN)

HSP 1 Score: 162 bits (410), Expect = 6.030e-48
Identity = 70/105 (66.67%), Postives = 87/105 (82.86%), Query Frame = 1 
Query:    1 LFNTASREKQPLRPQSGRRVKFYSCGPTVYDAAHVGNFRAFLTYDVLKRWLLYRGYDVEHVCNLTDVDDKIIQRMQRDGVGLKELTNKYADLFFEDLAALNIIPA 315
             +NT +R+KQP  P    +V  Y+CGPTVYD AH+GNFRAFLTYD++KRWLLY G++V+HVCNLTDVDDKIIQRM+RD + LK+LTN+YAD F  DLA LN++PA
Sbjct:   91 FYNTLTRDKQPFEPIQQGKVSMYTCGPTVYDFAHIGNFRAFLTYDLIKRWLLYCGFEVDHVCNLTDVDDKIIQRMKRDKISLKDLTNRYADAFLSDLALLNVVPA 195
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BLAST of mRNA_P-wetherbeei_contig15026.1.1 vs. uniprot
Match: A0A7S2S4N2_9STRA (Cysteine--tRNA ligase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S4N2_9STRA)

HSP 1 Score: 159 bits (402), Expect = 1.400e-44
Identity = 72/100 (72.00%), Postives = 84/100 (84.00%), Query Frame = 1 
Query:   16 SREKQPLRPQSGRRVKFYSCGPTVYDAAHVGNFRAFLTYDVLKRWLLYRGYDVEHVCNLTDVDDKIIQRMQRDGVGLKELTNKYADLFFEDLAALNIIPA 315
            SR K+P  P+   +V FYSCGPTVYD AH+GNFRAFLTYDVLKRWL + G+DVEHVCNLTD+DDKII R+ RDGV L+ELT+KYA  FFEDL ALN++PA
Sbjct:    1 SRSKEPFSPECPPKVSFYSCGPTVYDFAHIGNFRAFLTYDVLKRWLTFLGFDVEHVCNLTDIDDKIIARIARDGVSLQELTDKYAAAFFEDLDALNVMPA 100
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15026.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZDL4_9STRA7.010e-5578.10Cysteine--tRNA ligase n=1 Tax=Tribonema minus TaxI... [more]
A0A7S0CUB0_9EUKA1.360e-5374.07Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A7S3YUM7_9EUKA1.920e-5276.19Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
D7FX39_ECTSI4.690e-5177.14Cysteine--tRNA ligase n=1 Tax=Ectocarpus siliculos... [more]
L1I7X3_GUITC3.310e-4971.96Cysteine--tRNA ligase n=1 Tax=Guillardia theta (st... [more]
A0A7S0EPZ0_9CRYP8.770e-4971.96Cysteine--tRNA ligase (Fragment) n=1 Tax=Hanusia p... [more]
W7U426_9STRA1.650e-4873.33Cysteine--tRNA ligase n=2 Tax=Monodopsidaceae TaxI... [more]
A0A7S4UT40_GUITH5.740e-4871.96Cysteine--tRNA ligase n=1 Tax=Guillardia theta Tax... [more]
A0A7S0Y1W6_HEMAN6.030e-4866.67Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S2S4N2_9STRA1.400e-4472.00Cysteine--tRNA ligase n=1 Tax=Rhizochromulina mari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15026contigP-wetherbeei_contig15026:8..501 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog227086.JGI_V11_33777
PFAMsDALR_2,tRNA-synt_1e
Model size315
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01883
KEGG ReactionR03650
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
Exons2
Evalue1.13e-52
EggNOG OGsCOG0215@1|root,KOG2007@2759|Eukaryota
Ec32 ortholog descriptionCysteinyl-tRNA Synthetase
Ec32 orthologEc-10_004180.1
EC6.1.1.16
Descriptioncysteinyl-tRNA aminoacylation
Cds size315
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186041.901424-CDS-P-wetherbeei_contig15026:7..581683186041.901424-CDS-P-wetherbeei_contig15026:7..58Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15026 8..58 -
1683186041.912512-CDS-P-wetherbeei_contig15026:237..5011683186041.912512-CDS-P-wetherbeei_contig15026:237..501Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15026 238..501 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15026.1.1prot_P-wetherbeei_contig15026.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15026 8..501 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15026.1.1

>prot_P-wetherbeei_contig15026.1.1 ID=prot_P-wetherbeei_contig15026.1.1|Name=mRNA_P-wetherbeei_contig15026.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=105bp
LFNTASREKQPLRPQSGRRVKFYSCGPTVYDAAHVGNFRAFLTYDVLKRW
LLYRGYDVEHVCNLTDVDDKIIQRMQRDGVGLKELTNKYADLFFEDLAAL
NIIPA
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mRNA from alignment at P-wetherbeei_contig15026:8..501-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15026.1.1 ID=mRNA_P-wetherbeei_contig15026.1.1|Name=mRNA_P-wetherbeei_contig15026.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=494bp|location=Sequence derived from alignment at P-wetherbeei_contig15026:8..501- (Phaeothamnion wetherbeei SAG_119_79)
CTGTTCAACACGGCATCGCGGGAAAAGCAGCCGCTGCGACCTCAATCAGG
GCGACGCGTCAAGTTTTACTCGTGCGGCCCCACAGTGTACGACGCGGCGC
ATGTTGGCAACTTCCGCGCTTTCCTGACGTACGACGTCCTTAAACGATGG
CTGCTGTACCGCGGCTACGACGTGGAACACGTCTGTAACTTGACCGACGT
GGACGATAAGATCATCCAGCGGATGCAGCGCGACGGCGTCGGCCTCAAGG
AACTGACAAACAAGGTAAGACTTTTCGCATGACTGCTGATCTGTTAACAA
GTTTAGCAATAGTTTTCGTATTCTGGAGAAGAAACTTTACCCTCCTTCTC
ACATACCGCTCACGATCGTTGCTTCCCCCTGCGCTTCCCCGCGCCTGACG
TCGTCCTGCCCATCCGCACGCCTAACTAACGCCCCTCCGGCAGTACGCAG
ACCTCTTTTTTGAGGATCTGGCGGCCCTGAACATCATCCCCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15026:8..501-

>mRNA_P-wetherbeei_contig15026.1.1 ID=mRNA_P-wetherbeei_contig15026.1.1|Name=mRNA_P-wetherbeei_contig15026.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=315bp|location=Sequence derived from alignment at P-wetherbeei_contig15026:8..501- (Phaeothamnion wetherbeei SAG_119_79)
CTGTTCAACACGGCATCGCGGGAAAAGCAGCCGCTGCGACCTCAATCAGG
GCGACGCGTCAAGTTTTACTCGTGCGGCCCCACAGTGTACGACGCGGCGC
ATGTTGGCAACTTCCGCGCTTTCCTGACGTACGACGTCCTTAAACGATGG
CTGCTGTACCGCGGCTACGACGTGGAACACGTCTGTAACTTGACCGACGT
GGACGATAAGATCATCCAGCGGATGCAGCGCGACGGCGTCGGCCTCAAGG
AACTGACAAACAAGTACGCAGACCTCTTTTTTGAGGATCTGGCGGCCCTG
AACATCATCCCCGCC
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