mRNA_P-wetherbeei_contig15024.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15024.1.1
Unique NamemRNA_P-wetherbeei_contig15024.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15024.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15024contigP-wetherbeei_contig15024:210..1653 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size898
Hectar predicted targeting categorysignal peptide
Exons4
Cds size873
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15024.1.1prot_P-wetherbeei_contig15024.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15024 226..1644 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186041.8289304-UTR-P-wetherbeei_contig15024:209..2251683186041.8289304-UTR-P-wetherbeei_contig15024:209..225Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15024 210..225 -
1683186041.8745542-UTR-P-wetherbeei_contig15024:1644..16531683186041.8745542-UTR-P-wetherbeei_contig15024:1644..1653Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15024 1645..1653 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186041.8385766-CDS-P-wetherbeei_contig15024:225..5481683186041.8385766-CDS-P-wetherbeei_contig15024:225..548Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15024 226..548 -
1683186041.8475618-CDS-P-wetherbeei_contig15024:757..7891683186041.8475618-CDS-P-wetherbeei_contig15024:757..789Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15024 758..789 -
1683186041.8566005-CDS-P-wetherbeei_contig15024:991..12931683186041.8566005-CDS-P-wetherbeei_contig15024:991..1293Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15024 992..1293 -
1683186041.8656209-CDS-P-wetherbeei_contig15024:1428..16441683186041.8656209-CDS-P-wetherbeei_contig15024:1428..1644Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15024 1429..1644 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15024.1.1

>prot_P-wetherbeei_contig15024.1.1 ID=prot_P-wetherbeei_contig15024.1.1|Name=mRNA_P-wetherbeei_contig15024.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=291bp
MPVAPPPPLLLLPPLLLPAAAMSTKDMVATTAASRTAATMLMTATTAAAA
VLTVWTSCRMSFLTVVVAGAMKALLLWARAAAAAVWVPAVAVAWAPAPAM
TVARTPATAATARTLWVTLMKALAETLAAKWRPAAETTESTAVGRPAARA
AGQMRSGTAMAAWTMAAMTCKTRGSSPLPLQQKASHANGRAADMPLPYPS
RLHHRHRRRPAAAKHQVCRAASRTVWLPRSDGATPFLLPLTRCPLLCASC
RLERFVRLEIRGSWGKDETLDICTSRRSCVDAFKNGNFGP*
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mRNA from alignment at P-wetherbeei_contig15024:210..1653-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15024.1.1 ID=mRNA_P-wetherbeei_contig15024.1.1|Name=mRNA_P-wetherbeei_contig15024.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1444bp|location=Sequence derived from alignment at P-wetherbeei_contig15024:210..1653- (Phaeothamnion wetherbeei SAG_119_79)
AGGACAATTATGCCGGTGGCGCCGCCGCCGCCGCTGCTGCTGCTGCCGCC
GCTGTTGCTGCCGGCGGCGGCGATGAGTACAAAGGATATGGTGGCTACAA
CGGCAGCATCGAGAACGGCGGCAACGATGCTGATGACGGCGACGACGGCG
GCAGCGGCGGTGTTGACCGTATGGACATCGTGCCGGATGTCGTTCCTGAC
GGTGGTGGTGGCGGGGGCTATGAAGGCGAGGCCGAAGGAGAGGATGACAT
CTATGCTTCCCTCGCCACGTCTTCGAATCTAGCTCCCGGTGCCGTTCAGG
CTGACGCTTTCGTAACCACTCCTGGCTCCACCCCCTGCGGTACCTTCAAT
ACCGCTCCAGGCCCTTCTTTTGTGGGCGCGGGCGGCGGCAGCAGCAGTAT
GGGTTCCGGCGGTAGCAGTGGCGTGGGCGCCGGCGCCAGCAATGACGGTG
GCGCGAACGCCGGCAACAGCAGCAACAGCGCGAACGTTGTGGGTAACGTT
GATGAAGGCGTTGGCGGAAACACTGGCGGCGAAATGGAGGCCGGCGGCGG
AGACAACAGAATCAACGGCGGTGGGGAGGCCGGCGGCAAGGGCGGCGGGG
CAGATGCGGTCGGGAACGGCAATGGCGGCATGGACTATGGCGGCGATGAC
CTGTAAAACGAGGTGGGACTCTCTCGAGTGGAAACGGGGTTGGGCGGCGG
CGCATTCTTTGCGGTTGTCTTGCCTTCCACCATTCGTGTTCTTTCTCCAA
TGCTGTTGCTTTTGTTCTGGCAGCATGGCAGCCAGCGGAGTCTGCTCAAG
GCTTCATCGTTTGCCATGCGGCGCTGCTCGCGTCTCCTTTTTGCTCATCG
CTTTTGGCCTGCAGGGGTTCCAGCCCGCTGCCGCTGCAGCAAAAAGGTGA
GAGCCCGCCTGCGCCTTCCTTTTTGGGCGGCCCAGACGAAGCACTGGGCT
GGTCGATCGCTGTGCCTTTCAAGCGCGGCAACAAAATTCCATTCCTGCGC
TGCTTCGTCCTCCCGCGCCGGCTGCTTACGGGCTCGGTACACCGCGGTTG
CTTCGTTCCTCTTGTTTGTACTTGTTCGTTTCTCTCCGCTCTTCACGAAA
CTCAGCATCGCATGCAAATGGCCGCGCCGCCGACATGCCGCTGCCTTACC
CGAGCCGCCTGCATCATCGTCATCGTCGCCGGCCGGCTGCGGCCAAGCAC
CAGGTGTGCCGCGCCGCCAGCCGGACCGTTTGGTTGCCACGGTCGGATGG
TGCGACGCCGTTCTTGCTCCCGCTGACCCGTTGTCCCCTGCTGTGTGCTT
CTTGCCGGCTTGAGCGGTTCGTGCGACTCGAGATAAGGGGTAGTTGGGGG
AAAGATGAGACGCTTGATATTTGTACGTCGAGACGTTCCTGCGTCGATGC
GTTTAAGAACGGAAATTTCGGCCCATAGAACGCACAACTCAAGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15024:210..1653-

>mRNA_P-wetherbeei_contig15024.1.1 ID=mRNA_P-wetherbeei_contig15024.1.1|Name=mRNA_P-wetherbeei_contig15024.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=873bp|location=Sequence derived from alignment at P-wetherbeei_contig15024:210..1653- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGGTGGCGCCGCCGCCGCCGCTGCTGCTGCTGCCGCCGCTGTTGCT
GCCGGCGGCGGCGATGAGTACAAAGGATATGGTGGCTACAACGGCAGCAT
CGAGAACGGCGGCAACGATGCTGATGACGGCGACGACGGCGGCAGCGGCG
GTGTTGACCGTATGGACATCGTGCCGGATGTCGTTCCTGACGGTGGTGGT
GGCGGGGGCTATGAAGGCCCTTCTTTTGTGGGCGCGGGCGGCGGCAGCAG
CAGTATGGGTTCCGGCGGTAGCAGTGGCGTGGGCGCCGGCGCCAGCAATG
ACGGTGGCGCGAACGCCGGCAACAGCAGCAACAGCGCGAACGTTGTGGGT
AACGTTGATGAAGGCGTTGGCGGAAACACTGGCGGCGAAATGGAGGCCGG
CGGCGGAGACAACAGAATCAACGGCGGTGGGGAGGCCGGCGGCAAGGGCG
GCGGGGCAGATGCGGTCGGGAACGGCAATGGCGGCATGGACTATGGCGGC
GATGACCTGTAAAACGAGGGGTTCCAGCCCGCTGCCGCTGCAGCAAAAAG
CATCGCATGCAAATGGCCGCGCCGCCGACATGCCGCTGCCTTACCCGAGC
CGCCTGCATCATCGTCATCGTCGCCGGCCGGCTGCGGCCAAGCACCAGGT
GTGCCGCGCCGCCAGCCGGACCGTTTGGTTGCCACGGTCGGATGGTGCGA
CGCCGTTCTTGCTCCCGCTGACCCGTTGTCCCCTGCTGTGTGCTTCTTGC
CGGCTTGAGCGGTTCGTGCGACTCGAGATAAGGGGTAGTTGGGGGAAAGA
TGAGACGCTTGATATTTGTACGTCGAGACGTTCCTGCGTCGATGCGTTTA
AGAACGGAAATTTCGGCCCATAG
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