mRNA_P-wetherbeei_contig1502.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1502.3.1
Unique NamemRNA_P-wetherbeei_contig1502.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1502.3.1 vs. uniprot
Match: A0A6H5KW76_9PHAE (LisH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW76_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 7.270e-38
Identity = 82/142 (57.75%), Postives = 101/142 (71.13%), Query Frame = 3
Query:   24 TLEDLKAALNEMLEQRGVLGQVKARIRAEVFRALEGPADAVPPPPPLSNENLLINELVREYLAYNRYDHAASVLMAESGQPSPDDALNRDFVRDELGLAEFPACT--GIAR-LPLLYGIVSALKQRRHQPPSVSGAVEAASE 440
            T++DLK AL E LE RGVLG+++A++RAEVF  LEGP + V P P LSNENLLINELVR+YL+YN Y +A  V MAESGQP  + +L+R F+RDELGL+E    T  G AR LPLLYGI  ALK+RR +    +G      E
Sbjct:   21 TIDDLKQALVENLEHRGVLGKLRAKVRAEVFHTLEGPQEGVLPTP-LSNENLLINELVRDYLSYNGYSNALGVFMAESGQPI-ERSLDRGFIRDELGLSERRDSTDHGSARPLPLLYGITHALKRRRKEASGNNGGYAECEE 160          
BLAST of mRNA_P-wetherbeei_contig1502.3.1 vs. uniprot
Match: D7FVJ9_ECTSI (Similar to chemokine (C-C motif) receptor 6a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVJ9_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 1.700e-35
Identity = 76/129 (58.91%), Postives = 95/129 (73.64%), Query Frame = 3
Query:   24 TLEDLKAALNEMLEQRGVLGQVKARIRAEVFRALEGPADAVPPPPPLSNENLLINELVREYLAYNRYDHAASVLMAESGQPSPDDALNRDFVRDELGLAEFPACT---GIARLPLLYGIVSALKQRRHQ 401
            T++DLK AL E LE RGVLG+++A++RAEVF  LEGP + V P P LSN+NLLINELVR+YL+YN Y +A  V MAESGQP  + +L+R F+RDELGL+E        G   LPLLYGI  ALK+RR +
Sbjct:   21 TIDDLKQALVENLEHRGVLGKLRAKVRAEVFHTLEGPQERVLPTP-LSNDNLLINELVRDYLSYNGYANALGVFMAESGQPI-ERSLDRGFIRDELGLSERLDSIDRGGARPLPLLYGITHALKRRRKE 147          
BLAST of mRNA_P-wetherbeei_contig1502.3.1 vs. uniprot
Match: A0A8B7Y9V1_ACAPL (lisH domain-containing protein FOPNL-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7Y9V1_ACAPL)

HSP 1 Score: 128 bits (322), Expect = 3.010e-34
Identity = 71/128 (55.47%), Postives = 93/128 (72.66%), Query Frame = 3
Query:   21 STLEDLKAALNEMLEQRGVLGQVKARIRAEVFRALEGPADAVPPPPPLSNENLLINELVREYLAYNRYDHAASVLMAESGQPSPDDALNRDFVRDELGLAEFPACTGIARLPLLYGIVSALKQRRHQP 404
            S++++LK+ L E LE RGVLGQ+KAR+RAEVF AL+  +D   P PPLSNEN+LINEL+REYL +N+Y +AASVLMAESGQP     L+R+F+ +EL + E       A +PLLYGI+S   Q +  P
Sbjct:    2 SSVQELKSVLRETLETRGVLGQIKARVRAEVFHALDDQSD---PRPPLSNENMLINELIREYLEFNKYKYAASVLMAESGQPQTP--LDREFLVNELNITED---RDTATVPLLYGILSHFLQSKRTP 121          
BLAST of mRNA_P-wetherbeei_contig1502.3.1 vs. uniprot
Match: A0A1S3I2D6_LINUN (lisH domain-containing protein FOPNL n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3I2D6_LINUN)

HSP 1 Score: 124 bits (312), Expect = 8.840e-33
Identity = 66/128 (51.56%), Postives = 92/128 (71.88%), Query Frame = 3
Query:   21 STLEDLKAALNEMLEQRGVLGQVKARIRAEVFRALEGPADAVPPPPPLSNENLLINELVREYLAYNRYDHAASVLMAESGQPSPDDALNRDFVRDELGLAEFPACTGIARLPLLYGIVSALKQ-RRHQ 401
            + L++LK  + E LE+RGVLGQ+KAR+RAEVF AL+  AD   P PPLSNEN++INEL+REYL YN+Y + ASV++AE+GQP     LNR+F+ ++L + E    + + +LPLLY I++      RHQ
Sbjct:    2 ANLQELKTVVKETLEKRGVLGQIKARVRAEVFNALDDQAD---PRPPLSNENMIINELIREYLEYNKYKYTASVMLAETGQPKTP--LNREFLAEQLNVVEDKTASSL-KLPLLYSIIAQFTPGSRHQ 123          
BLAST of mRNA_P-wetherbeei_contig1502.3.1 vs. uniprot
Match: UPI002026670D (centrosomal protein 20 isoform X1 n=2 Tax=Sphaerodactylus townsendi TaxID=933632 RepID=UPI002026670D)

HSP 1 Score: 123 bits (308), Expect = 3.950e-32
Identity = 69/121 (57.02%), Postives = 87/121 (71.90%), Query Frame = 3
Query:   21 STLEDLKAALNEMLEQRGVLGQVKARIRAEVFRALEGPADAVPPPPPLSNENLLINELVREYLAYNRYDHAASVLMAESGQPSPDDALNRDFVRDELGLAEFPACTGIARLPLLYGIVSAL 383
            +T+ +LKA L + LE+RG LGQ+KARIRAEVF AL+   D   P PPLS+ENLLINEL+REYL +N+Y +AASVL AESGQP     L+RDF+  EL + E P    +   PLLYGI++ L
Sbjct:    2 ATITELKAVLKDTLEKRGALGQIKARIRAEVFNALD---DQTEPRPPLSHENLLINELIREYLEFNKYKYAASVLTAESGQPEVP--LDRDFLVKELNVVEDPKSRSV---PLLYGILAQL 114          
BLAST of mRNA_P-wetherbeei_contig1502.3.1 vs. uniprot
Match: UPI001EE4F0DF (centrosomal protein 20-like n=2 Tax=Haliotis TaxID=6452 RepID=UPI001EE4F0DF)

HSP 1 Score: 122 bits (307), Expect = 4.330e-32
Identity = 79/144 (54.86%), Postives = 94/144 (65.28%), Query Frame = 3
Query:   30 EDLKAALNEMLEQRGVLGQVKARIRAEVFRALEGPADAVPPPPPLSNENLLINELVREYLAYNRYDHAASVLMAESGQPSPDDALNRDFVRDELGLAE-FPACTGIARLPLLYGIVSALKQRRHQPPSVSGAVEAASEYGETRG 458
            EDLK  L + LE RGVLGQ+KARIRAEVF AL+   D     PPLSNEN+LINEL+REYL YN+Y +A+SVL+AESG P    AL R+F+R+EL + E  PA T    +PLLY IVS    R   P S + A   AS     RG
Sbjct:    5 EDLKEVLKDSLENRGVLGQIKARIRAEVFNALD---DQTEHKPPLSNENVLINELIREYLEYNKYRYASSVLVAESGMPKV--ALEREFLRNELNVVEDAPAKT----VPLLYSIVSHYVNRH--PRSTTAAQGRASHREGNRG 137          
BLAST of mRNA_P-wetherbeei_contig1502.3.1 vs. uniprot
Match: UPI0018D85249 (centrosomal protein 20-like isoform X2 n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D85249)

HSP 1 Score: 122 bits (307), Expect = 5.130e-32
Identity = 71/145 (48.97%), Postives = 98/145 (67.59%), Query Frame = 3
Query:   21 STLEDLKAALNEMLEQRGVLGQVKARIRAEVFRALEGPADAVPPPPPLSNENLLINELVREYLAYNRYDHAASVLMAESGQPSPDDALNRDFVRDELGLAEFPACTGIARLPLLYGIVSALKQRRHQPPSVSGAVEAASEYGETR 455
            +++++LKA L E LE RGV+GQ+KAR+RAEVF AL+   D   P PPLSNEN+LINEL+REYL +N+Y +++SVLMAESGQP     L+R+F+ +EL + E       A +PLLYGI+S   Q +    S   +  A +   +TR
Sbjct:    2 TSVQELKAVLKETLETRGVMGQIKARVRAEVFHALDDQND---PRPPLSNENMLINELIREYLEFNKYKYSSSVLMAESGQPQTP--LDREFLVNELNITEDRES---ATVPLLYGILSHFLQTKRTAASKEHSRTAKATSKDTR 138          
BLAST of mRNA_P-wetherbeei_contig1502.3.1 vs. uniprot
Match: A0A665U0W6_ECHNA (FGFR1OP N-terminal like n=1 Tax=Echeneis naucrates TaxID=173247 RepID=A0A665U0W6_ECHNA)

HSP 1 Score: 121 bits (304), Expect = 7.070e-32
Identity = 68/119 (57.14%), Postives = 88/119 (73.95%), Query Frame = 3
Query:   21 STLEDLKAALNEMLEQRGVLGQVKARIRAEVFRALEGPADAVPPPPPLSNENLLINELVREYLAYNRYDHAASVLMAESGQPSPDDALNRDFVRDELGLAEFPACTGIARLPLLYGIVS 377
            +T+ +LK A+ + LE RGVLGQ+KARIRAEVF AL+   +A PP   LS+ENLLINEL+REYL +NRY + ASVL AESGQP  +D L+R F+ +EL + E P+   +   PLLYG+VS
Sbjct:    2 ATITELKCAVRDTLESRGVLGQLKARIRAEVFSALDDRREARPP---LSHENLLINELIREYLEFNRYRYTASVLTAESGQP--EDPLDRQFLANELKVTEDPSSKSV---PLLYGLVS 112          
BLAST of mRNA_P-wetherbeei_contig1502.3.1 vs. uniprot
Match: A0A553QSB8_9TELE (LisH domain-containing protein n=1 Tax=Danionella translucida TaxID=623744 RepID=A0A553QSB8_9TELE)

HSP 1 Score: 122 bits (305), Expect = 7.080e-32
Identity = 69/119 (57.98%), Postives = 86/119 (72.27%), Query Frame = 3
Query:   21 STLEDLKAALNEMLEQRGVLGQVKARIRAEVFRALEGPADAVPPPPPLSNENLLINELVREYLAYNRYDHAASVLMAESGQPSPDDALNRDFVRDELGLAEFPACTGIARLPLLYGIVS 377
            +T+ +LK+AL E LE RGVLGQ+KAR+RAEVF AL+ P     P PPLS+ENLLINEL+REYL +N+Y + ASVL AESGQP     L RDF+  EL +AE P+   +   PLLYG+ S
Sbjct:   16 ATVTELKSALRETLETRGVLGQLKARVRAEVFSALDDPNT---PRPPLSHENLLINELIREYLEFNKYRYTASVLTAESGQPEVP--LERDFLAKELNVAEDPSSKTV---PLLYGLFS 126          
BLAST of mRNA_P-wetherbeei_contig1502.3.1 vs. uniprot
Match: A0A6P3W149_CLUHA (lisH domain-containing protein FOPNL n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A6P3W149_CLUHA)

HSP 1 Score: 121 bits (303), Expect = 9.440e-32
Identity = 69/125 (55.20%), Postives = 88/125 (70.40%), Query Frame = 3
Query:   21 STLEDLKAALNEMLEQRGVLGQVKARIRAEVFRALEGPADAVPPPPPLSNENLLINELVREYLAYNRYDHAASVLMAESGQPSPDDALNRDFVRDELGLAEFPACTGIARLPLLYGIVSALKQRR 395
            +++ +LK AL E LE RGV+G++KARIRAEVF AL+   D   P PPLS+ENLLINEL+REYL +N+Y + ASVL AESGQP     L+R FV +EL + E P   G   +PLLYG++S   Q R
Sbjct:    2 ASITELKCALRETLEARGVMGKLKARIRAEVFNALD---DQSEPRPPLSHENLLINELIREYLEFNKYRYTASVLTAESGQPEVP--LDRQFVANELNVVEDP---GARTMPLLYGLLSHFLQSR 118          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1502.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KW76_9PHAE7.270e-3857.75LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FVJ9_ECTSI1.700e-3558.91Similar to chemokine (C-C motif) receptor 6a n=1 T... [more]
A0A8B7Y9V1_ACAPL3.010e-3455.47lisH domain-containing protein FOPNL-like n=1 Tax=... [more]
A0A1S3I2D6_LINUN8.840e-3351.56lisH domain-containing protein FOPNL n=1 Tax=Lingu... [more]
UPI002026670D3.950e-3257.02centrosomal protein 20 isoform X1 n=2 Tax=Sphaerod... [more]
UPI001EE4F0DF4.330e-3254.86centrosomal protein 20-like n=2 Tax=Haliotis TaxID... [more]
UPI0018D852495.130e-3248.97centrosomal protein 20-like isoform X2 n=1 Tax=Pat... [more]
A0A665U0W6_ECHNA7.070e-3257.14FGFR1OP N-terminal like n=1 Tax=Echeneis naucrates... [more]
A0A553QSB8_9TELE7.080e-3257.98LisH domain-containing protein n=1 Tax=Danionella ... [more]
A0A6P3W149_CLUHA9.440e-3255.20lisH domain-containing protein FOPNL n=1 Tax=Clupe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1502contigP-wetherbeei_contig1502:4914..5841 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FVJ9
Preferred nameFOPNL
PFAMsFOP_dimer,LisH
Model size595
Max annot lvl2759|Eukaryota
KEGG koko:K16535
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0006996,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0031514,GO:0034451,GO:0036064,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044782,GO:0060271,GO:0070925,GO:0071840,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Exons2
Evalue8.78e-32
EggNOG OGs2B269@1|root,2S0C1@2759|Eukaryota
Ec32 ortholog descriptionLIS1 domain protein
Ec32 orthologEc-15_003580.1
Descriptionmicrotubule anchoring
Cds size528
COG categoryS
BRITEko00000,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186041.7055228-UTR-P-wetherbeei_contig1502:4913..49241683186041.7055228-UTR-P-wetherbeei_contig1502:4913..4924Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1502 4914..4924 -
1683186041.7396674-UTR-P-wetherbeei_contig1502:5785..58411683186041.7396674-UTR-P-wetherbeei_contig1502:5785..5841Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1502 5786..5841 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186041.7214491-CDS-P-wetherbeei_contig1502:4924..54221683186041.7214491-CDS-P-wetherbeei_contig1502:4924..5422Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1502 4925..5422 -
1683186041.7304764-CDS-P-wetherbeei_contig1502:5755..57851683186041.7304764-CDS-P-wetherbeei_contig1502:5755..5785Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1502 5756..5785 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1502.3.1prot_P-wetherbeei_contig1502.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1502 4925..5785 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1502.3.1

>prot_P-wetherbeei_contig1502.3.1 ID=prot_P-wetherbeei_contig1502.3.1|Name=mRNA_P-wetherbeei_contig1502.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=176bp
MLEQRGVLGQVKARIRAEVFRALEGPADAVPPPPPLSNENLLINELVREY
LAYNRYDHAASVLMAESGQPSPDDALNRDFVRDELGLAEFPACTGIARLP
LLYGIVSALKQRRHQPPSVSGAVEAASEYGETRGEGEKRSWPGAELAAAS
AMGGLSGSGRDEGQAGTPLVFANTR*
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mRNA from alignment at P-wetherbeei_contig1502:4914..5841-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1502.3.1 ID=mRNA_P-wetherbeei_contig1502.3.1|Name=mRNA_P-wetherbeei_contig1502.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=928bp|location=Sequence derived from alignment at P-wetherbeei_contig1502:4914..5841- (Phaeothamnion wetherbeei SAG_119_79)
CCGATCCGGTGTTCGATTCATCAACGCTCGAAGACCTCAAGGCAGCGCTC AATGAGATGTTGGAGCAGCGAGGAGTCCTAGGGCAGGTAAGTTTTTTTGA AATTGGCATCGGAAGATGAAACCCGCTCTTTGGTTTGACGGTGATTAACA CAAGTGGGACGTAGTGTTACGGCATTCGCACGCCACGTTCCACCTTCCCA AGCCTGCTGCGAAGGCGAGTTCTCGAAATGTCAAAAGGTGGCCCCTCCGT TCCTCTTTCCCTGTTATATGAGCACAAGTTACATTTTAGAGTCTGTCTGT CATCAGAGGTCAAAAGCCGGAGGCCGCCAAGGCTTGGATAGCGGCGAAGC AAGCGGGTTCCTATACTGTACTCAATGCCCTCCATTGCGAACCCCACCCC TCAACAACTTCGGCCCCAGGTCAAGGCGCGGATCCGCGCCGAGGTTTTTC GAGCGCTGGAGGGCCCGGCGGATGCCGTGCCGCCGCCGCCGCCGCTGTCA AACGAGAACCTCCTCATCAATGAGCTCGTCCGCGAGTATCTGGCCTACAA CCGCTACGACCATGCCGCGTCCGTCCTGATGGCGGAGTCGGGTCAGCCGT CGCCCGACGACGCCCTCAACCGCGACTTCGTCCGCGACGAGCTCGGCCTC GCCGAGTTTCCCGCCTGCACTGGAATCGCGCGCTTGCCGCTCCTGTACGG GATTGTTTCTGCGCTGAAGCAGCGGCGTCATCAGCCTCCGTCCGTTTCGG GAGCGGTGGAGGCGGCGTCGGAATACGGGGAGACGCGGGGAGAAGGGGAG AAGCGGTCGTGGCCAGGAGCGGAACTGGCGGCGGCGAGCGCCATGGGCGG CCTGAGCGGTTCCGGCCGGGACGAGGGACAGGCGGGAACGCCGCTAGTCT TTGCAAATACAAGATGAAGTTTTGAAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1502:4914..5841-

>mRNA_P-wetherbeei_contig1502.3.1 ID=mRNA_P-wetherbeei_contig1502.3.1|Name=mRNA_P-wetherbeei_contig1502.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=528bp|location=Sequence derived from alignment at P-wetherbeei_contig1502:4914..5841- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTGGAGCAGCGAGGAGTCCTAGGGCAGGTCAAGGCGCGGATCCGCGC
CGAGGTTTTTCGAGCGCTGGAGGGCCCGGCGGATGCCGTGCCGCCGCCGC
CGCCGCTGTCAAACGAGAACCTCCTCATCAATGAGCTCGTCCGCGAGTAT
CTGGCCTACAACCGCTACGACCATGCCGCGTCCGTCCTGATGGCGGAGTC
GGGTCAGCCGTCGCCCGACGACGCCCTCAACCGCGACTTCGTCCGCGACG
AGCTCGGCCTCGCCGAGTTTCCCGCCTGCACTGGAATCGCGCGCTTGCCG
CTCCTGTACGGGATTGTTTCTGCGCTGAAGCAGCGGCGTCATCAGCCTCC
GTCCGTTTCGGGAGCGGTGGAGGCGGCGTCGGAATACGGGGAGACGCGGG
GAGAAGGGGAGAAGCGGTCGTGGCCAGGAGCGGAACTGGCGGCGGCGAGC
GCCATGGGCGGCCTGAGCGGTTCCGGCCGGGACGAGGGACAGGCGGGAAC
GCCGCTAGTCTTTGCAAATACAAGATGA
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