mRNA_P-wetherbeei_contig15016.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15016.1.1
Unique NamemRNA_P-wetherbeei_contig15016.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15016.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15016contigP-wetherbeei_contig15016:134..1652 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1519
Hectar predicted targeting categoryother localisation
Exons1
Cds size1386
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186041.4715347-UTR-P-wetherbeei_contig15016:133..2661683186041.4715347-UTR-P-wetherbeei_contig15016:133..266Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15016 134..266 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186041.489854-CDS-P-wetherbeei_contig15016:266..16521683186041.489854-CDS-P-wetherbeei_contig15016:266..1652Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15016 267..1652 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15016.1.1prot_P-wetherbeei_contig15016.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15016 267..1652 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15016.1.1

>prot_P-wetherbeei_contig15016.1.1 ID=prot_P-wetherbeei_contig15016.1.1|Name=mRNA_P-wetherbeei_contig15016.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=462bp
MFSSLSSLANKGLSKAVHVAAAVGEVVAPRDQDFESEDDDGSQNGGDGPH
HNGDYETTDGHHANGDGHNIQASEVLALQEELEQMRLQRSLLREELSSVE
SSFLASSKQLQAMLVAREHEIVELKGKLATLGTSGTGIDAAATEADGAGA
KSLKTAATAEREDAEVKAEALCKALDAKTAETKALAAELHAARAAAAEDA
ARLDADWRALEEQREEQRRNASDRSDECFQLRLQLEAQRTVKQEMQAALE
QEREATAAWAAEATAASAAAEQARREVEALNSALQVASSQSKSVDAADTA
ETAVALSSLQGEQAATADTAAALFSLQREAAALRSARDDAERRLANAEAL
VAAHATAAQELQQRMDGAAEESSALKIQLAARSQELAAARSAAAVAERTA
QAALAAVELAQRAAAARPDATAGELRKTRERIGTLEAELRAAAAIAADAP
AAGCSSAGGGDD
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mRNA from alignment at P-wetherbeei_contig15016:134..1652+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15016.1.1 ID=mRNA_P-wetherbeei_contig15016.1.1|Name=mRNA_P-wetherbeei_contig15016.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1519bp|location=Sequence derived from alignment at P-wetherbeei_contig15016:134..1652+ (Phaeothamnion wetherbeei SAG_119_79)
CGGCCTTCTACCTCCACGCCTCCGGGTCGATGCAGCGCTCTTGCTTGTTG
TCCGTTTGACTGGCAGTGGTAGGCCGTCTGCTAAAAATCGGAAGTTCCTT
TCCAATTTTGAACAGCGCTAAGACTTAGTTGCGATGTTTTCCTCGCTCTC
GTCCCTGGCGAACAAGGGCCTCTCAAAGGCGGTCCACGTGGCCGCCGCGG
TGGGCGAAGTCGTCGCGCCAAGAGACCAAGACTTTGAGAGTGAAGACGAC
GATGGTAGCCAGAACGGTGGTGACGGCCCTCACCACAATGGTGACTACGA
AACAACAGACGGACACCATGCCAACGGGGACGGGCACAACATTCAGGCTT
CAGAGGTCTTGGCACTCCAAGAAGAGTTGGAGCAGATGAGATTGCAACGA
AGCCTGCTGCGGGAAGAGCTTAGCAGCGTTGAATCGAGCTTCCTGGCAAG
CAGCAAGCAGCTGCAAGCCATGCTCGTCGCGAGGGAGCACGAGATTGTCG
AACTGAAGGGAAAACTGGCGACCTTGGGCACCTCAGGTACTGGCATTGAT
GCAGCAGCAACTGAAGCAGACGGTGCCGGAGCAAAGTCATTGAAAACGGC
AGCAACCGCCGAAAGGGAGGATGCCGAAGTTAAAGCGGAGGCGCTATGCA
AGGCGCTGGACGCGAAAACCGCCGAAACGAAGGCGCTGGCCGCGGAGCTG
CATGCAGCAAGAGCGGCTGCGGCCGAAGACGCTGCCCGTCTCGACGCCGA
CTGGCGCGCGCTCGAGGAGCAACGGGAGGAGCAGCGGCGCAACGCCTCCG
ACCGGAGCGACGAATGCTTTCAGCTGAGGCTGCAGCTCGAAGCGCAACGA
ACGGTAAAGCAGGAGATGCAGGCGGCACTCGAGCAGGAGCGGGAGGCAAC
GGCGGCATGGGCTGCGGAGGCGACCGCCGCTTCAGCGGCGGCGGAACAGG
CGCGGCGCGAGGTGGAAGCTTTGAATTCCGCCTTGCAGGTAGCGTCGTCG
CAAAGCAAGTCTGTTGATGCGGCTGACACTGCCGAAACTGCAGTGGCCCT
CTCGAGCCTGCAGGGTGAGCAGGCAGCAACGGCGGACACTGCAGCGGCTC
TGTTCAGCCTGCAACGGGAAGCGGCGGCTTTGCGGAGCGCTCGCGATGAT
GCTGAGCGGCGCCTCGCCAATGCAGAGGCGCTAGTGGCGGCGCACGCCAC
TGCGGCGCAAGAGCTTCAGCAGCGAATGGACGGAGCGGCCGAAGAGTCGT
CAGCGTTAAAGATTCAGCTGGCGGCGCGATCGCAGGAGCTGGCGGCCGCG
CGCTCGGCGGCGGCCGTCGCGGAGCGCACGGCGCAGGCGGCGCTGGCGGC
AGTGGAGCTGGCCCAGAGAGCCGCCGCCGCCCGGCCCGACGCCACCGCGG
GCGAATTGAGGAAGACTCGGGAACGCATTGGCACATTGGAAGCGGAGCTG
CGAGCGGCGGCCGCTATCGCGGCTGATGCCCCTGCTGCCGGATGCTCTAG
CGCTGGCGGTGGCGACGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15016:134..1652+

>mRNA_P-wetherbeei_contig15016.1.1 ID=mRNA_P-wetherbeei_contig15016.1.1|Name=mRNA_P-wetherbeei_contig15016.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1386bp|location=Sequence derived from alignment at P-wetherbeei_contig15016:134..1652+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTTTCCTCGCTCTCGTCCCTGGCGAACAAGGGCCTCTCAAAGGCGGT
CCACGTGGCCGCCGCGGTGGGCGAAGTCGTCGCGCCAAGAGACCAAGACT
TTGAGAGTGAAGACGACGATGGTAGCCAGAACGGTGGTGACGGCCCTCAC
CACAATGGTGACTACGAAACAACAGACGGACACCATGCCAACGGGGACGG
GCACAACATTCAGGCTTCAGAGGTCTTGGCACTCCAAGAAGAGTTGGAGC
AGATGAGATTGCAACGAAGCCTGCTGCGGGAAGAGCTTAGCAGCGTTGAA
TCGAGCTTCCTGGCAAGCAGCAAGCAGCTGCAAGCCATGCTCGTCGCGAG
GGAGCACGAGATTGTCGAACTGAAGGGAAAACTGGCGACCTTGGGCACCT
CAGGTACTGGCATTGATGCAGCAGCAACTGAAGCAGACGGTGCCGGAGCA
AAGTCATTGAAAACGGCAGCAACCGCCGAAAGGGAGGATGCCGAAGTTAA
AGCGGAGGCGCTATGCAAGGCGCTGGACGCGAAAACCGCCGAAACGAAGG
CGCTGGCCGCGGAGCTGCATGCAGCAAGAGCGGCTGCGGCCGAAGACGCT
GCCCGTCTCGACGCCGACTGGCGCGCGCTCGAGGAGCAACGGGAGGAGCA
GCGGCGCAACGCCTCCGACCGGAGCGACGAATGCTTTCAGCTGAGGCTGC
AGCTCGAAGCGCAACGAACGGTAAAGCAGGAGATGCAGGCGGCACTCGAG
CAGGAGCGGGAGGCAACGGCGGCATGGGCTGCGGAGGCGACCGCCGCTTC
AGCGGCGGCGGAACAGGCGCGGCGCGAGGTGGAAGCTTTGAATTCCGCCT
TGCAGGTAGCGTCGTCGCAAAGCAAGTCTGTTGATGCGGCTGACACTGCC
GAAACTGCAGTGGCCCTCTCGAGCCTGCAGGGTGAGCAGGCAGCAACGGC
GGACACTGCAGCGGCTCTGTTCAGCCTGCAACGGGAAGCGGCGGCTTTGC
GGAGCGCTCGCGATGATGCTGAGCGGCGCCTCGCCAATGCAGAGGCGCTA
GTGGCGGCGCACGCCACTGCGGCGCAAGAGCTTCAGCAGCGAATGGACGG
AGCGGCCGAAGAGTCGTCAGCGTTAAAGATTCAGCTGGCGGCGCGATCGC
AGGAGCTGGCGGCCGCGCGCTCGGCGGCGGCCGTCGCGGAGCGCACGGCG
CAGGCGGCGCTGGCGGCAGTGGAGCTGGCCCAGAGAGCCGCCGCCGCCCG
GCCCGACGCCACCGCGGGCGAATTGAGGAAGACTCGGGAACGCATTGGCA
CATTGGAAGCGGAGCTGCGAGCGGCGGCCGCTATCGCGGCTGATGCCCCT
GCTGCCGGATGCTCTAGCGCTGGCGGTGGCGACGAC
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