mRNA_P-wetherbeei_contig15011.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15011.1.1
Unique NamemRNA_P-wetherbeei_contig15011.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15011.1.1 vs. uniprot
Match: A0A1F4F478_9PROT (Exodeoxyribonuclease 7 small subunit n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 TaxID=1797505 RepID=A0A1F4F478_9PROT)

HSP 1 Score: 79.3 bits (194), Expect = 7.430e-18
Identity = 42/66 (63.64%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:    1 MVRAPRQGSPDESKLIPDGLTFERALDELEKLVGRMEGGDLSLEESLAAHKRGLELARFCQDRLES 198
            M ++PRQ S   + + P GL+FE+AL ELEK+V RME  +LSLE++LAAHKRGLELARFCQ RLE+
Sbjct:    1 MSKSPRQDSAAATGIEP-GLSFEKALAELEKIVARMESSELSLEQALAAHKRGLELARFCQRRLEA 65
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BLAST of mRNA_P-wetherbeei_contig15011.1.1 vs. uniprot
Match: A0A521VJX3_9PROT (Exodeoxyribonuclease 7 small subunit n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521VJX3_9PROT)

HSP 1 Score: 76.3 bits (186), Expect = 1.100e-16
Identity = 40/65 (61.54%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:    1 MVRAPRQGSPDESKLIPDGLTFERALDELEKLVGRMEGGDLSLEESLAAHKRGLELARFCQDRLE 195
            M ++ RQG+  ++      LTFE+AL ELEK+V RMEGG+LSLE++LAAH+RGLELA+FCQ RLE
Sbjct:    1 MSKSSRQGAAADAG---SELTFEKALAELEKVVARMEGGELSLEQALAAHRRGLELAKFCQHRLE 62
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BLAST of mRNA_P-wetherbeei_contig15011.1.1 vs. uniprot
Match: A0A1F4F0W3_9PROT (Exodeoxyribonuclease 7 small subunit n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4F0W3_9PROT)

HSP 1 Score: 76.3 bits (186), Expect = 1.130e-16
Identity = 41/66 (62.12%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:    1 MVRAPRQGSPDESKLIPDGLTFERALDELEKLVGRMEGGDLSLEESLAAHKRGLELARFCQDRLES 198
            M +  RQ SP  +  +   LTFE+AL ELEK+V RMEGG+LSLE++LAAH+RGLELA+FCQ RLE+
Sbjct:    1 MSKTSRQ-SPANAADLGSELTFEKALAELEKVVARMEGGELSLEQALAAHQRGLELAKFCQARLEA 65
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BLAST of mRNA_P-wetherbeei_contig15011.1.1 vs. uniprot
Match: A0A536WTS9_9PROT (Exodeoxyribonuclease 7 small subunit n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536WTS9_9PROT)

HSP 1 Score: 75.5 bits (184), Expect = 1.540e-16
Identity = 37/50 (74.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:   49 PDGLTFERALDELEKLVGRMEGGDLSLEESLAAHKRGLELARFCQDRLES 198
            P  LTFE AL ELEK+V RME G+LSLE++LA HKRGLELARFCQ RLE+
Sbjct:    5 PQELTFEAALAELEKIVSRMESGELSLEQALATHKRGLELARFCQQRLEA 54
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BLAST of mRNA_P-wetherbeei_contig15011.1.1 vs. uniprot
Match: A0A1F4B3L0_9PROT (Exodeoxyribonuclease 7 small subunit n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_66_14 TaxID=1797490 RepID=A0A1F4B3L0_9PROT)

HSP 1 Score: 74.3 bits (181), Expect = 6.340e-16
Identity = 35/47 (74.47%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:   58 LTFERALDELEKLVGRMEGGDLSLEESLAAHKRGLELARFCQDRLES 198
            ++FE+AL ELEK+V RMEGG+LSLE++LAAHKRGLELA+FCQ RLE+
Sbjct:   18 MSFEKALAELEKVVARMEGGELSLEQALAAHKRGLELAKFCQTRLEA 64
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BLAST of mRNA_P-wetherbeei_contig15011.1.1 vs. uniprot
Match: A0A536SJK0_9PROT (Exodeoxyribonuclease 7 small subunit n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536SJK0_9PROT)

HSP 1 Score: 71.6 bits (174), Expect = 5.250e-15
Identity = 35/50 (70.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:   49 PDGLTFERALDELEKLVGRMEGGDLSLEESLAAHKRGLELARFCQDRLES 198
            P  LTFE AL ELEK+V RME G+L LE++LA HKRGLELARFCQ +LE+
Sbjct:    5 PPELTFESALAELEKIVNRMESGELPLEQALATHKRGLELARFCQQQLET 54
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BLAST of mRNA_P-wetherbeei_contig15011.1.1 vs. uniprot
Match: A0A7V9E0U5_9BURK (Exodeoxyribonuclease 7 small subunit n=1 Tax=Burkholderiaceae bacterium TaxID=2030806 RepID=A0A7V9E0U5_9BURK)

HSP 1 Score: 67.8 bits (164), Expect = 2.690e-13
Identity = 33/60 (55.00%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:   19 QGSPDESKLIPDGLTFERALDELEKLVGRMEGGDLSLEESLAAHKRGLELARFCQDRLES 198
            + +P  S   P+ L+FE+ALDEL+ LV RME G +SL++S+AA++RG ELARFCQ +L S
Sbjct:    2 KATPAASLAPPESLSFEQALDELDTLVRRMESGQMSLDDSVAAYRRGAELARFCQGKLAS 61
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BLAST of mRNA_P-wetherbeei_contig15011.1.1 vs. uniprot
Match: A0A7V2M759_9PROT (Exodeoxyribonuclease 7 small subunit n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7V2M759_9PROT)

HSP 1 Score: 67.0 bits (162), Expect = 4.210e-13
Identity = 32/45 (71.11%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:   58 LTFERALDELEKLVGRMEGGDLSLEESLAAHKRGLELARFCQDRL 192
            LTFE+ALDEL+ LV RME GDLSL+ES+AA++RG ELAR+CQ +L
Sbjct:   13 LTFEQALDELDTLVRRMESGDLSLDESIAAYRRGAELARYCQGKL 57
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BLAST of mRNA_P-wetherbeei_contig15011.1.1 vs. uniprot
Match: A0A1F4CCG8_9PROT (Exodeoxyribonuclease 7 small subunit n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_64_23 TaxID=1797499 RepID=A0A1F4CCG8_9PROT)

HSP 1 Score: 66.6 bits (161), Expect = 5.820e-13
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:   25 SPDESKLIPDGLTFERALDELEKLVGRMEGGDLSLEESLAAHKRGLELARFCQDRL 192
            SP  +    + L+FE AL ELEKLV  ME G LSLE+SLAAHKRGLELA++CQ +L
Sbjct:    4 SPKPTPADGESLSFEAALAELEKLVAGMESGQLSLEQSLAAHKRGLELAQYCQAKL 59
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BLAST of mRNA_P-wetherbeei_contig15011.1.1 vs. uniprot
Match: A0A6J5E7I9_9BURK (Exodeoxyribonuclease 7 small subunit n=4 Tax=Paraburkholderia TaxID=1822464 RepID=A0A6J5E7I9_9BURK)

HSP 1 Score: 67.0 bits (162), Expect = 5.840e-13
Identity = 36/57 (63.16%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:   25 SPDESKLIPDGLTFERALDELEKLVGRMEGGDLSLEESLAAHKRGLELARFCQDRLE 195
            SP+E+   P   T+E AL ELE LVGRMEGG LSLEESLAA++RG  L  FCQ +LE
Sbjct:   13 SPEEAAGAPLPETYEAALAELEGLVGRMEGGSLSLEESLAAYRRGAALVAFCQQQLE 69
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15011.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F4F478_9PROT7.430e-1863.64Exodeoxyribonuclease 7 small subunit n=1 Tax=Betap... [more]
A0A521VJX3_9PROT1.100e-1661.54Exodeoxyribonuclease 7 small subunit n=1 Tax=Betap... [more]
A0A1F4F0W3_9PROT1.130e-1662.12Exodeoxyribonuclease 7 small subunit n=2 Tax=uncla... [more]
A0A536WTS9_9PROT1.540e-1674.00Exodeoxyribonuclease 7 small subunit n=1 Tax=Betap... [more]
A0A1F4B3L0_9PROT6.340e-1674.47Exodeoxyribonuclease 7 small subunit n=1 Tax=Betap... [more]
A0A536SJK0_9PROT5.250e-1570.00Exodeoxyribonuclease 7 small subunit n=1 Tax=Betap... [more]
A0A7V9E0U5_9BURK2.690e-1355.00Exodeoxyribonuclease 7 small subunit n=1 Tax=Burkh... [more]
A0A7V2M759_9PROT4.210e-1371.11Exodeoxyribonuclease 7 small subunit n=1 Tax=Betap... [more]
A0A1F4CCG8_9PROT5.820e-1362.50Exodeoxyribonuclease 7 small subunit n=1 Tax=Betap... [more]
A0A6J5E7I9_9BURK5.840e-1363.16Exodeoxyribonuclease 7 small subunit n=4 Tax=Parab... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15011contigP-wetherbeei_contig15011:3..200 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog667632.KB890166_gene1384
Preferred namexseB
PFAMsExonuc_VII_S
Model size198
Max annot lvl28216|Betaproteobacteria
KEGG koko:K03602
KEGG Pathwayko03430,map03430
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.64e-12
EggNOG OGsCOG1722@1|root,COG1722@2|Bacteria,1PTYP@1224|Proteobacteria,2VVQV@28216|Betaproteobacteria,1K9WF@119060|Burkholderiaceae
EC3.1.11.6
DescriptionBidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides
Cds size198
COG categoryL
BRITEko00000,ko00001,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186041.1775784-CDS-P-wetherbeei_contig15011:2..2001683186041.1775784-CDS-P-wetherbeei_contig15011:2..200Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15011 3..200 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15011.1.1prot_P-wetherbeei_contig15011.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15011 3..200 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15011.1.1

>prot_P-wetherbeei_contig15011.1.1 ID=prot_P-wetherbeei_contig15011.1.1|Name=mRNA_P-wetherbeei_contig15011.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=66bp
MVRAPRQGSPDESKLIPDGLTFERALDELEKLVGRMEGGDLSLEESLAAH
KRGLELARFCQDRLES
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mRNA from alignment at P-wetherbeei_contig15011:3..200-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15011.1.1 ID=mRNA_P-wetherbeei_contig15011.1.1|Name=mRNA_P-wetherbeei_contig15011.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=198bp|location=Sequence derived from alignment at P-wetherbeei_contig15011:3..200- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTTCGCGCCCCGCGTCAGGGTTCCCCTGACGAATCGAAACTCATTCC
CGACGGCCTCACTTTTGAGCGCGCACTCGACGAGCTCGAGAAGCTCGTCG
GCCGCATGGAAGGCGGCGATTTGTCGCTCGAGGAATCCCTCGCCGCCCAC
AAGCGGGGGCTGGAGCTCGCGCGCTTTTGCCAGGACCGGCTCGAATCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15011:3..200-

>mRNA_P-wetherbeei_contig15011.1.1 ID=mRNA_P-wetherbeei_contig15011.1.1|Name=mRNA_P-wetherbeei_contig15011.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=198bp|location=Sequence derived from alignment at P-wetherbeei_contig15011:3..200- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTTCGCGCCCCGCGTCAGGGTTCCCCTGACGAATCGAAACTCATTCC
CGACGGCCTCACTTTTGAGCGCGCACTCGACGAGCTCGAGAAGCTCGTCG
GCCGCATGGAAGGCGGCGATTTGTCGCTCGAGGAATCCCTCGCCGCCCAC
AAGCGGGGGCTGGAGCTCGCGCGCTTTTGCCAGGACCGGCTCGAATCG
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