mRNA_P-wetherbeei_contig15008.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15008.1.2
Unique NamemRNA_P-wetherbeei_contig15008.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15008.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15008contigP-wetherbeei_contig15008:376..1151 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size661
Hectar predicted targeting categorysignal peptide
Exons2
Cds size453
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186041.0596106-UTR-P-wetherbeei_contig15008:375..5811683186041.0596106-UTR-P-wetherbeei_contig15008:375..581Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15008 376..581 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186041.067966-CDS-P-wetherbeei_contig15008:581..7371683186041.067966-CDS-P-wetherbeei_contig15008:581..737Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15008 582..737 -
1683186041.0759952-CDS-P-wetherbeei_contig15008:854..11511683186041.0759952-CDS-P-wetherbeei_contig15008:854..1151Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15008 855..1151 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15008.1.2prot_P-wetherbeei_contig15008.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15008 582..1151 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15008.1.2

>prot_P-wetherbeei_contig15008.1.2 ID=prot_P-wetherbeei_contig15008.1.2|Name=mRNA_P-wetherbeei_contig15008.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=151bp
NISVSALCTVALILRGVQQRSSSSPIFRELPKKVSRRIRGIANEEKSTLL
WGSPQPRGTRTMSFLHAKDGSVGATPTPATGFSRRFRHSTVTSHERRIQV
FQQLATGDEPEHTAGDVPPPRLLPTALSLGVAAIIPVETTATTRAFLRLP
*
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mRNA from alignment at P-wetherbeei_contig15008:376..1151-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15008.1.2 ID=mRNA_P-wetherbeei_contig15008.1.2|Name=mRNA_P-wetherbeei_contig15008.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=776bp|location=Sequence derived from alignment at P-wetherbeei_contig15008:376..1151- (Phaeothamnion wetherbeei SAG_119_79)
AATATTTCAGTATCGGCACTATGTACTGTAGCGTTAATCCTGCGGGGCGT
GCAGCAGCGCAGCAGCTCTTCCCCTATTTTCCGGGAACTTCCCAAGAAAG
TTTCGAGAAGAATCCGGGGCATAGCAAACGAAGAGAAATCAACTTTGCTA
TGGGGCAGCCCACAGCCTCGCGGTACCAGAACAATGTCCTTCCTTCATGC
AAAAGATGGCTCGGTCGGGGCGACTCCAACCCCAGCAACCGGATTTTCGC
GTCGCTTCCGGCATTCCACAGTAACGTCCCACGAAAGGAGAATTCAGGTA
GGTCCTTTAGAAGACAGAGGCTTGTGGCGCCACCTCTCTCTTCCTCGGCC
GATTTTTTTGGGGGAGGCTCTTAAAGGGAACCCTCGCCTACCAATACATT
TGACCTTCACACAGGTTTTCCAACAGCTCGCGACAGGTGACGAGCCGGAA
CACACGGCAGGCGACGTACCGCCACCAAGGCTGCTGCCGACGGCCCTCTC
TCTCGGCGTCGCGGCAATAATTCCAGTCGAAACCACGGCTACAACAAGGG
CCTTTCTCCGCTTGCCGTAAACGAATCAACCCCCCGCAGTGCCGCCGGTA
CACGCGCGTTGGCCGCCCCGCAACTCACCGCTGCTCGCCACGGCTGCTTC
TCGCGGGCTTGCTGCTGCTTGGCCGTGATGGCAGATGAAGAAGAGTTTTT
TGGGGCTGCGCGTCGGCTGTCGCCACTTATGTCTGCGTCGTCGCGTTCTT
GCTCTTACTGCGATTCAACTTGAAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15008:376..1151-

>mRNA_P-wetherbeei_contig15008.1.2 ID=mRNA_P-wetherbeei_contig15008.1.2|Name=mRNA_P-wetherbeei_contig15008.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig15008:376..1151- (Phaeothamnion wetherbeei SAG_119_79)
AATATTTCAGTATCGGCACTATGTACTGTAGCGTTAATCCTGCGGGGCGT
GCAGCAGCGCAGCAGCTCTTCCCCTATTTTCCGGGAACTTCCCAAGAAAG
TTTCGAGAAGAATCCGGGGCATAGCAAACGAAGAGAAATCAACTTTGCTA
TGGGGCAGCCCACAGCCTCGCGGTACCAGAACAATGTCCTTCCTTCATGC
AAAAGATGGCTCGGTCGGGGCGACTCCAACCCCAGCAACCGGATTTTCGC
GTCGCTTCCGGCATTCCACAGTAACGTCCCACGAAAGGAGAATTCAGGTT
TTCCAACAGCTCGCGACAGGTGACGAGCCGGAACACACGGCAGGCGACGT
ACCGCCACCAAGGCTGCTGCCGACGGCCCTCTCTCTCGGCGTCGCGGCAA
TAATTCCAGTCGAAACCACGGCTACAACAAGGGCCTTTCTCCGCTTGCCG
TAA
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