mRNA_P-wetherbeei_contig15003.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15003.1.1
Unique NamemRNA_P-wetherbeei_contig15003.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15003.1.1 vs. uniprot
Match: A0A5D6Y257_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y257_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.270e-9
Identity = 37/79 (46.84%), Postives = 48/79 (60.76%), Query Frame = 1 
Query:  154 ELFFLIADFLERATPCRDAVQALRRDMERNHLFGQAFNWRGEPRPATLAQMRLRYGGVPPSQLPQLL--SAYARAPGAP 384
            E+ FLIADFL+R T C  A  AL  ++  + L  Q  NWRG+ RPAT    RLR+  + P+ L  LL  +A+A AP AP
Sbjct:   49 EVLFLIADFLKRRTKCAKAADALVEELAEHKLLKQTVNWRGDARPATYTDFRLRHRDIAPAHLLGLLKGAAHASAPKAP 127
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BLAST of mRNA_P-wetherbeei_contig15003.1.1 vs. uniprot
Match: A0A4D9DDC7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DDC7_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.270e-9
Identity = 29/69 (42.03%), Postives = 47/69 (68.12%), Query Frame = 1 
Query:  154 ELFFLIADFLERATPCRDAVQALRRDMERNHLFGQAFNWRGEPRPATLAQMRLRYGGVPPSQLPQLLSA 360
            EL+FL+ADFL R+TPC+ A   +R ++  + L G ++NW+G+   +T  ++ L+Y  +P  QLP+LL A
Sbjct:   20 ELYFLVADFLSRSTPCQRAASVMREELMEHGLLGVSYNWQGQSHRSTPQELGLKYRRLPRDQLPRLLQA 88
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BLAST of mRNA_P-wetherbeei_contig15003.1.1 vs. uniprot
Match: A0A6A5AIW4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AIW4_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.320e-8
Identity = 30/67 (44.78%), Postives = 42/67 (62.69%), Query Frame = 1 
Query:  154 ELFFLIADFLERATPCRDAVQALRRDMERNHLFGQAFNWRGEPRPATLAQMRLRYGGVPPSQLPQLL 354
            +++FL+ADFL RATPC  A   L  ++    L   A NW+G+ R AT A + LR+  +PP+QL  LL
Sbjct:   70 DVYFLVADFLRRATPCSRAASVLEEELHALGLLRTAVNWQGDERRATYADVHLRHRNLPPTQLVSLL 136
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BLAST of mRNA_P-wetherbeei_contig15003.1.1 vs. uniprot
Match: A0A485KTR4_9STRA (Aste57867_11528 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KTR4_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 3.680e-8
Identity = 29/67 (43.28%), Postives = 40/67 (59.70%), Query Frame = 1 
Query:  154 ELFFLIADFLERATPCRDAVQALRRDMERNHLFGQAFNWRGEPRPATLAQMRLRYGGVPPSQLPQLL 354
            +++FL+ADFL RATPC  A      ++    L   + NW G+ RPAT   M LR+  +PP+QL  LL
Sbjct:   69 DVYFLVADFLRRATPCSRAAAVFEEELNALGLLRTSVNWTGDERPATYTDMHLRHRRLPPTQLVSLL 135
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BLAST of mRNA_P-wetherbeei_contig15003.1.1 vs. uniprot
Match: A0A024U5Z5_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U5Z5_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 6.800e-8
Identity = 27/67 (40.30%), Postives = 40/67 (59.70%), Query Frame = 1 
Query:  154 ELFFLIADFLERATPCRDAVQALRRDMERNHLFGQAFNWRGEPRPATLAQMRLRYGGVPPSQLPQLL 354
            +++FL+ADFL R TPC  A  A   ++    L     NW+G  +PAT   +RLR+  +PP+QL  +L
Sbjct:   72 DVYFLVADFLRRGTPCSKAASAFEEELHSMGLLRTTVNWQGHEQPATYTDLRLRHRRLPPTQLVSIL 138
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BLAST of mRNA_P-wetherbeei_contig15003.1.1 vs. uniprot
Match: A0A6G0XRZ7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XRZ7_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 9.230e-8
Identity = 31/84 (36.90%), Postives = 45/84 (53.57%), Query Frame = 1 
Query:  103 ASNEMDVDXXXXXXXPEELFFLIADFLERATPCRDAVQALRRDMERNHLFGQAFNWRGEPRPATLAQMRLRYGGVPPSQLPQLL 354
            A +  ++D         +++FLIADFL RATPC  A   L  ++    L     NW+G+ RPA+   M LR+  +PP+ L  LL
Sbjct:   42 AQSTTNLDRFGAIEEMRDVYFLIADFLRRATPCSRAAAVLEEELNSLGLLHTTVNWQGQERPASYMDMHLRHRRLPPTHLVSLL 125
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BLAST of mRNA_P-wetherbeei_contig15003.1.1 vs. uniprot
Match: A0A662Y5I9_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y5I9_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 9.330e-8
Identity = 31/67 (46.27%), Postives = 39/67 (58.21%), Query Frame = 1 
Query:  154 ELFFLIADFLERATPCRDAVQALRRDMERNHLFGQAFNWRGEPRPATLAQMRLRYGGVPPSQLPQLL 354
            E+FFLIADFL+R + C+     L  +ME   L     NWRGEP+PAT    RLR+  + P  L  LL
Sbjct:   88 EVFFLIADFLKRHSTCQKTADTLITEMEELQLLKGGVNWRGEPKPATYDDYRLRHRDLAPGHLVDLL 154
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BLAST of mRNA_P-wetherbeei_contig15003.1.1 vs. uniprot
Match: A0A418AYN5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AYN5_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.010e-7
Identity = 27/67 (40.30%), Postives = 39/67 (58.21%), Query Frame = 1 
Query:  154 ELFFLIADFLERATPCRDAVQALRRDMERNHLFGQAFNWRGEPRPATLAQMRLRYGGVPPSQLPQLL 354
            +++FL+ADFL R TPC  A      ++    L     NW+G  +PAT   +RLR+  +PP+QL  LL
Sbjct:   72 DVYFLVADFLRRGTPCSKAASVFEEELHSMGLLRTTVNWQGHEQPATYTDLRLRHRRLPPTQLVSLL 138
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BLAST of mRNA_P-wetherbeei_contig15003.1.1 vs. uniprot
Match: A0A1V9YQJ7_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YQJ7_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.260e-7
Identity = 30/67 (44.78%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:  154 ELFFLIADFLERATPCRDAVQALRRDMERNHLFGQAFNWRGEPRPATLAQMRLRYGGVPPSQLPQLL 354
            +++FLIADFL RATPC      L  ++    L   A +W+G  RPA+ A M LR+  +PP+ L QLL
Sbjct:   99 DVYFLIADFLRRATPCSRTAAVLEDELLSLGLLNTAVDWQGHERPASYADMHLRHRQLPPTHLVQLL 165
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BLAST of mRNA_P-wetherbeei_contig15003.1.1 vs. uniprot
Match: W4FU93_9STRA (Uncharacterized protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FU93_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.710e-7
Identity = 29/67 (43.28%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:  154 ELFFLIADFLERATPCRDAVQALRRDMERNHLFGQAFNWRGEPRPATLAQMRLRYGGVPPSQLPQLL 354
            +++FL+ADFL RATPC  A   L  ++    L   A NW+G+ R AT A + LR+  +P +QL  LL
Sbjct:   70 DVYFLVADFLRRATPCSRAASVLEEELHALGLLRTAVNWQGDERRATYADVHLRHRNLPATQLVSLL 136
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15003.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A5D6Y257_9STRA1.270e-946.84Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A4D9DDC7_9STRA1.270e-942.03Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A6A5AIW4_9STRA1.320e-844.78Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A485KTR4_9STRA3.680e-843.28Aste57867_11528 protein n=1 Tax=Aphanomyces stella... [more]
A0A024U5Z5_9STRA6.800e-840.30Uncharacterized protein n=4 Tax=Aphanomyces invada... [more]
A0A6G0XRZ7_9STRA9.230e-836.90Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A662Y5I9_9STRA9.330e-846.27Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A418AYN5_9STRA1.010e-740.30Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A1V9YQJ7_9STRA1.260e-744.78Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
W4FU93_9STRA1.710e-743.28Uncharacterized protein n=8 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15003contigP-wetherbeei_contig15003:240..899 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LEP1
PFAMsAAA_16,Bromodomain,ORC4_C,PHD,WD40
Model size490
Max annot lvl2759|Eukaryota
KEGG koko:K02606,ko:K11797,ko:K11798
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
KEGG ModuleM00284
Hectar predicted targeting categoryother localisation
GOsGO:0001932,GO:0001934,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006325,GO:0006355,GO:0006357,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007010,GO:0007088,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007346,GO:0008104,GO:0008150,GO:0008284,GO:0008286,GO:0008360,GO:0009719,GO:0009725,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010647,GO:0010648,GO:0010799,GO:0010800,GO:0010941,GO:0015031,GO:0015833,GO:0016043,GO:0017038,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032868,GO:0032869,GO:0032870,GO:0033036,GO:0033043,GO:0033135,GO:0033138,GO:0033365,GO:0034097,GO:0034504,GO:0034613,GO:0038111,GO:0040008,GO:0042127,GO:0042221,GO:0042325,GO:0042327,GO:0042393,GO:0042886,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043434,GO:0043567,GO:0043568,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045787,GO:0045840,GO:0045893,GO:0045931,GO:0045935,GO:0045937,GO:0045944,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051276,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0060255,GO:0060548,GO:0065007,GO:0065008,GO:0070013,GO:0070577,GO:0070727,GO:0070887,GO:0071310,GO:0071345,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0080090,GO:0090068,GO:0098760,GO:0098761,GO:0140030,GO:0140033,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141,GO:2001233,GO:2001234,GO:2001236,GO:2001237
Exons2
Evalue3.28e-09
EggNOG OGsCOG2319@1|root,COG5141@1|root,KOG0644@2759|Eukaryota,KOG0955@2759|Eukaryota
Descriptionchromatin organization
Cds size486
COG categoryP
BRITEko00000,ko00001,ko00002,ko03032,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186040.8572583-CDS-P-wetherbeei_contig15003:241..4931683186040.8572583-CDS-P-wetherbeei_contig15003:241..493Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15003 242..493 -
1683186040.8726106-CDS-P-wetherbeei_contig15003:665..8991683186040.8726106-CDS-P-wetherbeei_contig15003:665..899Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15003 666..899 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15003.1.1prot_P-wetherbeei_contig15003.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15003 242..899 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15003.1.1

>prot_P-wetherbeei_contig15003.1.1 ID=prot_P-wetherbeei_contig15003.1.1|Name=mRNA_P-wetherbeei_contig15003.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=162bp
THAKTRSTKLLSQGSIQWYTEKEMVDFVPRGGGGASNEMDVDDDAERRPP
EELFFLIADFLERATPCRDAVQALRRDMERNHLFGQAFNWRGEPRPATLA
QMRLRYGGVPPSQLPQLLSAYARAPGAPRMLTGPVAPVAVEAEAAREAAA
ELASASPADTAA
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mRNA from alignment at P-wetherbeei_contig15003:240..899-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15003.1.1 ID=mRNA_P-wetherbeei_contig15003.1.1|Name=mRNA_P-wetherbeei_contig15003.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=660bp|location=Sequence derived from alignment at P-wetherbeei_contig15003:240..899- (Phaeothamnion wetherbeei SAG_119_79)
ACACACGCCAAAACGAGATCTACAAAACTTCTCTCCCAGGGGTCGATACA
GTGGTATACCGAGAAGGAAATGGTGGACTTTGTCCCTCGGGGCGGAGGTG
GAGCTTCAAACGAGATGGACGTCGACGACGACGCTGAGCGCCGTCCGCCA
GAGGAGCTATTCTTTTTAATCGCGGATTTCCTCGAGCGTGCGACCCCCTG
CCGGGATGCGGTGCAGGCGCTCCGTCGAGACATGGTTAGTTCCTTGAAGC
TGGAATATTGCGAATACGCTTTGCTCTTCTTTAGCCCCAGTTTCTAGCGT
TTCCTGGCTCTCCTAGAAAGAGTTCCGGCAACCGGCTTACCGCTTCTTAT
CACGCCATCTTTCTTTTCTTGGTTCTTGCGGCGGAAACGCGTTCAAATCC
TGGCAGGAGCGCAACCATCTCTTCGGTCAGGCCTTCAATTGGCGCGGGGA
ACCGCGTCCCGCAACGCTGGCGCAGATGCGCCTTCGCTACGGCGGCGTCC
CGCCGAGCCAGCTGCCGCAGCTGCTCTCAGCGTACGCTAGGGCGCCGGGT
GCGCCAAGGATGCTGACGGGGCCTGTGGCCCCCGTTGCGGTAGAGGCGGA
GGCGGCGAGGGAAGCCGCGGCCGAGCTGGCGAGCGCGTCGCCCGCGGACA
CCGCCGCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15003:240..899-

>mRNA_P-wetherbeei_contig15003.1.1 ID=mRNA_P-wetherbeei_contig15003.1.1|Name=mRNA_P-wetherbeei_contig15003.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=486bp|location=Sequence derived from alignment at P-wetherbeei_contig15003:240..899- (Phaeothamnion wetherbeei SAG_119_79)
ACACACGCCAAAACGAGATCTACAAAACTTCTCTCCCAGGGGTCGATACA
GTGGTATACCGAGAAGGAAATGGTGGACTTTGTCCCTCGGGGCGGAGGTG
GAGCTTCAAACGAGATGGACGTCGACGACGACGCTGAGCGCCGTCCGCCA
GAGGAGCTATTCTTTTTAATCGCGGATTTCCTCGAGCGTGCGACCCCCTG
CCGGGATGCGGTGCAGGCGCTCCGTCGAGACATGGAGCGCAACCATCTCT
TCGGTCAGGCCTTCAATTGGCGCGGGGAACCGCGTCCCGCAACGCTGGCG
CAGATGCGCCTTCGCTACGGCGGCGTCCCGCCGAGCCAGCTGCCGCAGCT
GCTCTCAGCGTACGCTAGGGCGCCGGGTGCGCCAAGGATGCTGACGGGGC
CTGTGGCCCCCGTTGCGGTAGAGGCGGAGGCGGCGAGGGAAGCCGCGGCC
GAGCTGGCGAGCGCGTCGCCCGCGGACACCGCCGCG
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