mRNA_P-wetherbeei_contig15.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15.1.2
Unique NamemRNA_P-wetherbeei_contig15.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15.1.2 vs. uniprot
Match: A0A4D9CPF7_9STRA (F-box domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CPF7_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.250e-9
Identity = 32/72 (44.44%), Postives = 46/72 (63.89%), Query Frame = 3 
Query:  225 LPDEVTPLLFSYMEAPALCRAAAVSRSWAKFAEAD-AHWDSLCRARWGLAPNSFTPPPDPIKLLYRLHHSSL 437
            LP +    +  ++ AP+L  +  V R W + A  D AHW  LC+  +GL+P +F+PPPDP+KLLY L +SSL
Sbjct:  130 LPQDTIKQILRFLPAPSLLVSEMVCRLWRELASTDDAHWKDLCKRTYGLSPENFSPPPDPVKLLYMLTYSSL 201
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A4D9CPF7_9STRA2.250e-944.44F-box domain-containing protein n=2 Tax=Monodopsid... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15contigP-wetherbeei_contig15:3378..4793 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4792.ETI48184
PFAMsF-box-like
Model size950
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.49e-05
EggNOG OGs2CDWZ@1|root,2S60F@2759|Eukaryota,3QFI0@4776|Peronosporales
Ec32 ortholog descriptionF-box domain
Ec32 orthologEc-05_000820.1
DescriptionA Receptor for Ubiquitination Targets
Cds size507
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186039.958738-UTR-P-wetherbeei_contig15:3377..34181683186039.958738-UTR-P-wetherbeei_contig15:3377..3418Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15 3378..3418 +
1683186039.998677-UTR-P-wetherbeei_contig15:4391..47931683186039.998677-UTR-P-wetherbeei_contig15:4391..4793Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15 4392..4793 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186039.9710443-CDS-P-wetherbeei_contig15:3418..34401683186039.9710443-CDS-P-wetherbeei_contig15:3418..3440Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15 3419..3440 +
1683186039.980191-CDS-P-wetherbeei_contig15:3676..40661683186039.980191-CDS-P-wetherbeei_contig15:3676..4066Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15 3677..4066 +
1683186039.9893296-CDS-P-wetherbeei_contig15:4296..43911683186039.9893296-CDS-P-wetherbeei_contig15:4296..4391Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15 4297..4391 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15.1.2prot_P-wetherbeei_contig15.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15 3419..4391 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15.1.2

>prot_P-wetherbeei_contig15.1.2 ID=prot_P-wetherbeei_contig15.1.2|Name=mRNA_P-wetherbeei_contig15.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=169bp
MTPEDLSECRLIVPYRHGKHGRQLSAPRIQRKLICATDQNDTDFFVEIAT
EHHKNAPPRRHLPDEVTPLLFSYMEAPALCRAAAVSRSWAKFAEADAHWD
SLCRARWGLAPNSFTPPPDPIKLLYRLHHSSLKTMAVAEPRQSSCHLETH
GPGLPASRRMTRGQLHCK*
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mRNA from alignment at P-wetherbeei_contig15:3378..4793+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15.1.2 ID=mRNA_P-wetherbeei_contig15.1.2|Name=mRNA_P-wetherbeei_contig15.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1416bp|location=Sequence derived from alignment at P-wetherbeei_contig15:3378..4793+ (Phaeothamnion wetherbeei SAG_119_79)
CAGCATCTCATTTCGCACAGCGCGGCGCTGCTGTAGTCACGATGACGCCC
GAGGACCTCAGTGGTAAGTAAGATGCAGCTTTGCACGTGGCGTCGTATCC
TCAGGACGTCGAAAATGGGCAAGAGCACCATTTACGTGTGTCTCCCTCTT
ACTTCACCATGTACGTGCCCCTTTTTGCTTTCTCGTAGCATTCCGGCCTT
ACGACGCAGGTATGAAAGTGCATGCTTTCGCGCTTTCAAAATAGTTAATA
TTCGCCCATGCTTCCGCCTTCCTCCCGGTTTCCTCTCTGTCGTCATCAGA
GTGCCGGCTCATAGTTCCGTACAGACACGGAAAGCATGGGCGGCAGCTGA
GCGCTCCTCGCATCCAGCGCAAGTTGATTTGCGCTACGGACCAGAACGAT
ACGGACTTTTTCGTCGAAATCGCAACGGAGCACCACAAGAACGCTCCTCC
GAGACGCCACCTCCCGGACGAGGTCACCCCTCTTCTCTTCTCTTACATGG
AGGCGCCGGCCTTGTGCCGTGCCGCTGCAGTCAGCCGTTCCTGGGCCAAG
TTCGCTGAGGCGGACGCCCACTGGGACTCGCTCTGCCGCGCTCGGTGGGG
GCTGGCCCCGAACTCGTTCACGCCACCGCCAGACCCGATTAAGCTCCTTT
ACCGACTGCACCACAGCTCCCTCAAGACGATGGCCGTAGGTAAGAGACGA
GAAATTGGAGGAAAGGAGAGACAGACGCGTCGAAACAACGTTGCTCCGCT
CTTTACGTGCGCTCTGGCCGCCGCACATGTAGGGCATTGAGCTTGAATAG
CAGGCGCATAAAGAGAAGGGCGATAGCTAGCGCTCATTTGAGGAGAAAGA
AAACCTTATCTAACTATCTCGGCTGTCCCTTTGCGGCGCAAACCCACGGT
TTCCTAACTGGTAGGGCAGCAGAACCGCGGCAATCTTCCTGTCATCTCGA
GACGCATGGCCCTGGACTTCCTGCTTCGCGGCGGATGACTCGGGGCCAAT
TACACTGTAAGTAGCGACGTATCCGCGGTGCGAATGTGGAACGGGAGGCA
CCATGGCAACGGTGGTGGCTATCGTGGCGGAGGCGGCGGCGGCAGCAGCA
GTGGCAGCAACGGCCGCAGTGGTTGAGCCCCTGCGAGAAACAGATTTCCT
TGGCGGCGGCCGCCGGGCGTTTGCAGCCGGCTGGCTGCTTTGGCGCAAAA
TATGGATACCGATGTTGTCGTCGGTGGATTGCAGTAGGAGGTTCTCTCTT
TGAGAGAGGTGCGGTTCGGGCTGTTGCTGCATGGTGGCCGGATAGGCAGA
GAAAAGCGTGGGATGATCGGCTGTTTAAACAAAAATCGGCGGTTTGCGGT
TTGGCGGGACAGCAGGAGCAATGGAAGAGCCTCTATTGCACTGCGTTAAG
ACATTCCTTACTGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15:3378..4793+

>mRNA_P-wetherbeei_contig15.1.2 ID=mRNA_P-wetherbeei_contig15.1.2|Name=mRNA_P-wetherbeei_contig15.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig15:3378..4793+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGCCCGAGGACCTCAGTGAGTGCCGGCTCATAGTTCCGTACAGACA
CGGAAAGCATGGGCGGCAGCTGAGCGCTCCTCGCATCCAGCGCAAGTTGA
TTTGCGCTACGGACCAGAACGATACGGACTTTTTCGTCGAAATCGCAACG
GAGCACCACAAGAACGCTCCTCCGAGACGCCACCTCCCGGACGAGGTCAC
CCCTCTTCTCTTCTCTTACATGGAGGCGCCGGCCTTGTGCCGTGCCGCTG
CAGTCAGCCGTTCCTGGGCCAAGTTCGCTGAGGCGGACGCCCACTGGGAC
TCGCTCTGCCGCGCTCGGTGGGGGCTGGCCCCGAACTCGTTCACGCCACC
GCCAGACCCGATTAAGCTCCTTTACCGACTGCACCACAGCTCCCTCAAGA
CGATGGCCGTAGCAGAACCGCGGCAATCTTCCTGTCATCTCGAGACGCAT
GGCCCTGGACTTCCTGCTTCGCGGCGGATGACTCGGGGCCAATTACACTG
TAAGTAG
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